EMLSAG00000000728, EMLSAG00000000728-683494 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000728
Unique NameEMLSAG00000000728-683494
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000728 vs. C. finmarchicus
Match: gi|592911275|gb|GAXK01047100.1| (TSA: Calanus finmarchicus comp138301_c8_seq46 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.250e+0
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 0 
Query:    8 GFILGSSFGSQYQHPLHSYPSPVFPYH---LGSPSQFYASRQQFHHFNS 53
            G     S  SQ Q PL + P+   PY     GSP  FY + +QF  F++
Sbjct: 1717 GLCPNYSKKSQIQEPLLTEPAHNLPYQDLSTGSPMTFYPTMEQFASFDT 1863
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BLAST of EMLSAG00000000728 vs. C. finmarchicus
Match: gi|592911287|gb|GAXK01047088.1| (TSA: Calanus finmarchicus comp138301_c8_seq34 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.252e+0
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 0 
Query:    8 GFILGSSFGSQYQHPLHSYPSPVFPYH---LGSPSQFYASRQQFHHFNS 53
            G     S  SQ Q PL + P+   PY     GSP  FY + +QF  F++
Sbjct: 1775 GLCPNYSKKSQIQEPLLTEPAHNLPYQDLSTGSPMTFYPTMEQFASFDT 1921
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BLAST of EMLSAG00000000728 vs. C. finmarchicus
Match: gi|592911258|gb|GAXK01047117.1| (TSA: Calanus finmarchicus comp138301_c8_seq63 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.289e+0
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 0 
Query:    8 GFILGSSFGSQYQHPLHSYPSPVFPYH---LGSPSQFYASRQQFHHFNS 53
            G     S  SQ Q PL + P+   PY     GSP  FY + +QF  F++
Sbjct: 1336 GLCPNYSKKSQIQEPLLTEPAHNLPYQDLSTGSPMTFYPTMEQFASFDT 1482
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BLAST of EMLSAG00000000728 vs. C. finmarchicus
Match: gi|592911274|gb|GAXK01047101.1| (TSA: Calanus finmarchicus comp138301_c8_seq47 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.311e+0
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 0 
Query:    8 GFILGSSFGSQYQHPLHSYPSPVFPYH---LGSPSQFYASRQQFHHFNS 53
            G     S  SQ Q PL + P+   PY     GSP  FY + +QF  F++
Sbjct: 1705 GLCPNYSKKSQIQEPLLTEPAHNLPYQDLSTGSPMTFYPTMEQFASFDT 1851
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BLAST of EMLSAG00000000728 vs. C. finmarchicus
Match: gi|592911283|gb|GAXK01047092.1| (TSA: Calanus finmarchicus comp138301_c8_seq38 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.314e+0
Identity = 18/49 (36.73%), Postives = 24/49 (48.98%), Query Frame = 0 
Query:    8 GFILGSSFGSQYQHPLHSYPSPVFPYH---LGSPSQFYASRQQFHHFNS 53
            G     S  SQ Q PL + P+   PY     GSP  FY + +QF  F++
Sbjct: 1763 GLCPNYSKKSQIQEPLLTEPAHNLPYQDLSTGSPMTFYPTMEQFASFDT 1909
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BLAST of EMLSAG00000000728 vs. L. salmonis peptides
Match: EMLSAP00000000728 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:7767:8695:1 gene:EMLSAG00000000728 transcript:EMLSAT00000000728 description:"maker-LSalAtl2s1116-snap-gene-0.9")

HSP 1 Score: 231.491 bits (589), Expect = 3.108e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 
Query:    1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASRQQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSSNSKTGNNFNNGQLVHWYAGIY 116
            MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASRQQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSSNSKTGNNFNNGQLVHWYAGIY
Sbjct:    1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASRQQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSSNSKTGNNFNNGQLVHWYAGIY 116
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BLAST of EMLSAG00000000728 vs. L. salmonis peptides
Match: EMLSAP00000000727 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:12706:13290:1 gene:EMLSAG00000000727 transcript:EMLSAT00000000727 description:"augustus_masked-LSalAtl2s1116-processed-gene-0.2")

HSP 1 Score: 155.221 bits (391), Expect = 8.425e-49
Identity = 94/108 (87.04%), Postives = 97/108 (89.81%), Query Frame = 0 
Query:    1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASRQQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSSNSKTGNNFNNGQL 108
            MKILMILGF+LGSSFGSQYQHPLHSYPSPVFPYHL  PSQF+ASRQ F H NSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNS RD FSS+S TG NFN GQ 
Sbjct:    1 MKILMILGFLLGSSFGSQYQHPLHSYPSPVFPYHLTPPSQFFASRQPFLHSNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSHRDIFSSDSNTGTNFNKGQF 108
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BLAST of EMLSAG00000000728 vs. L. salmonis peptides
Match: EMLSAP00000001219 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:2555:3002:-1 gene:EMLSAG00000001219 transcript:EMLSAT00000001219 description:"maker-LSalAtl2s11-augustus-gene-0.13")

HSP 1 Score: 123.25 bits (308), Expect = 1.398e-36
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = 0 
Query:    1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASRQQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSSNSKTGNNFNN 105
            MKILMILG +LGS+F S+YQHPL  YPSP +P    S SQFYAS+Q F   NSHPV YPFP QTSTP PI+V TP+PVF++PDS+FNSQRDTFSS S TGNNFNN
Sbjct:    1 MKILMILGLLLGSTFASEYQHPLLPYPSPFYP----SQSQFYASQQPFFRSNSHPVLYPFPTQTSTPRPIIVATPIPVFVTPDSLFNSQRDTFSSGSNTGNNFNN 101
[Close]
BLAST of EMLSAG00000000728 vs. L. salmonis peptides
Match: EMLSAP00000001230 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:54372:55068:1 gene:EMLSAG00000001230 transcript:EMLSAT00000001230 description:"augustus_masked-LSalAtl2s11-processed-gene-0.1")

HSP 1 Score: 95.5153 bits (236), Expect = 2.035e-25
Identity = 71/142 (50.00%), Postives = 87/142 (61.27%), Query Frame = 0 
Query:    1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASR------------------------QQFHHFNSHPVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTF----------SSNSKTGNNFNNGQL 108
            MKIL++LGF+L SS GS Y+H L+SYPSP +P HL   S+FY SR                        Q FHH NSHP  YP PIQTSTP PI+VVTPVPVF++PDS+FNSQR+TF           +N + GNN  NG++
Sbjct:    1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKV 142
[Close]
BLAST of EMLSAG00000000728 vs. L. salmonis peptides
Match: EMLSAP00000001218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:21782:22338:-1 gene:EMLSAG00000001218 transcript:EMLSAT00000001218 description:"maker-LSalAtl2s11-augustus-gene-0.14")

HSP 1 Score: 85.1149 bits (209), Expect = 1.251e-21
Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = 0 
Query:   19 YQHPLHSYPSPVFPYHLGSPSQFYASRQQFHHFNSHPVPYPF----------------PIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSS-NSKTGNNFNNGQL 108
            YQHPLHSYP P +P H    S+FY SR      NS+PVP+ F                PIQTST  PI++ TPVPVF++P+S+FNSQRD FS  +S  G N  + Q 
Sbjct:   19 YQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQF 125
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000728 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000728 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592911275|gb|GAXK01047100.1|1.250e+036.73TSA: Calanus finmarchicus comp138301_c8_seq46 tran... [more]
gi|592911287|gb|GAXK01047088.1|1.252e+036.73TSA: Calanus finmarchicus comp138301_c8_seq34 tran... [more]
gi|592911258|gb|GAXK01047117.1|1.289e+036.73TSA: Calanus finmarchicus comp138301_c8_seq63 tran... [more]
gi|592911274|gb|GAXK01047101.1|1.311e+036.73TSA: Calanus finmarchicus comp138301_c8_seq47 tran... [more]
gi|592911283|gb|GAXK01047092.1|1.314e+036.73TSA: Calanus finmarchicus comp138301_c8_seq38 tran... [more]
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BLAST of EMLSAG00000000728 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000007283.108e-79100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:7767... [more]
EMLSAP000000007278.425e-4987.04pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:1270... [more]
EMLSAP000000012191.398e-3671.43pep:novel supercontig:LSalAtl2s:LSalAtl2s11:2555:3... [more]
EMLSAP000000012302.035e-2550.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11:54372:... [more]
EMLSAP000000012181.251e-2147.66pep:novel supercontig:LSalAtl2s:LSalAtl2s11:21782:... [more]
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BLAST of EMLSAG00000000728 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000728 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000728 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000728 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1116supercontigLSalAtl2s1116:7767..8695 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1116-snap-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000728 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000728EMLSAT00000000728-696575Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1116:7767..8695+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000728-683494 ID=EMLSAG00000000728-683494|Name=EMLSAG00000000728|organism=Lepeophtheirus salmonis|type=gene|length=929bp|location=Sequence derived from alignment at LSalAtl2s1116:7767..8695+ (Lepeophtheirus salmonis)
GTTCATTCAACATATTACAACATGAAGGTAATTTGATTGAATGCTTCCCG
ATCATATTTAATTATAAAATTTTTTTATTCAGATTTTAATGATCCTCGGA
TTTATTTTGGGTTCCTCCTTTGGAAGTCAATACCAACATCCTTTACATTC
ATACCCTAGTCCCGTTTTCCCATATCATCTCGGATCTCCATCACAGTTCT
ATGCTTCGCGACAACAATTTCATCATTTTAATAGTCATCCAGTCCCATAT
CCATTCCCTATTCAAACGTCTACTCCAGGGCCTATCGTTGTGGTAACCCC
AGTTCCAGTCTTTCTTTCTCCAGATTCCATATTCAACTCTCAGAGGGATA
CTTTTAGTAGCAATAGCAAAACTGGAAATAATTTCAACAATGGACAACTT
GGTAACAACTTCTTGAATGGAAAAATCCAGTCTACCAGCTCTACTAGTTC
ACCCTCAAGATTTAACAATCCTTTTTCAAACCAATCCCCCAATAATAAAA
TAATATCATCATATTCTAGCAACTAAAGCTATAAGAACATACTTTTCCAT
ATTATTGCAGTTTCCTTATGTGAAAGGCTTTTACTTATTTTACTCTATTA
ATTTATGTATGTGATGTACTTTGTAAATGGATCCTGATAATAAATAGTTA
TGTGACAGAAACAAGCTCAAAATATTTATCCAATTATTTATTATTTTTGC
AATTCAACTCATTTTTCGATGGAAAATAAATATGACTTATATCTGTGGAG
TGATATTAAACATATGCACCTTGAGTAACTACTTTTTCCTTTATTGACAT
ACTAATATTAATAGAAAGTTCATTAATTTTGAAATAGTGTTTATAGCTTT
ATTACCTTAAGGATTTTGCACATCGTAAATATAAATTGATTTTTCTTTTT
CAGTACATTGGTATGCAGGAATATATTAA
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