EMLSAG00000000730, EMLSAG00000000730-683496 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000730
Unique NameEMLSAG00000000730-683496
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Match: gi|592766460|gb|GAXK01188108.1| (TSA: Calanus finmarchicus comp10792_c6_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.659e+0
Identity = 20/74 (27.03%), Postives = 33/74 (44.59%), Query Frame = 0 
Query:   63 NCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRP-KWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTC 135
             C++CEF    V+  + D   V +I   ++  C     Y P     KC  FVD   +  ++ L+   + PK+ C
Sbjct:  419 GCEMCEFAMSIVDEHLKDSNTVDEIERMVQFICS----YLPGTIADKCEEFVDEYGQKVMDALVDDELKPKEVC 628
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BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Match: EMLSAP00000000730 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:123079:123572:-1 gene:EMLSAG00000000730 transcript:EMLSAT00000000730 description:"maker-LSalAtl2s1117-augustus-gene-1.22")

HSP 1 Score: 293.508 bits (750), Expect = 8.287e-103
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 
Query:    1 MIRNDSDLTIKTQENDTWSTKEFNSRRRQQDSKLYKMKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
            MIRNDSDLTIKTQENDTWSTKEFNSRRRQQDSKLYKMKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC
Sbjct:    1 MIRNDSDLTIKTQENDTWSTKEFNSRRRQQDSKLYKMKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
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BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25")

HSP 1 Score: 197.208 bits (500), Expect = 1.527e-65
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 0 
Query:   37 MKFVLMFATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141
            MKF LMFAT+IVVCNSVS+PVEEKLDNCKLC+FIFKK+N AIADGLGV KIVDT+KIECKIFFMYRPKWEKKCYAFV+NVVKPQLEG MGHI PPK+TCR LGYC
Sbjct:    1 MKFFLMFATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
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BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4")

HSP 1 Score: 123.635 bits (309), Expect = 1.078e-36
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 0 
Query:   37 MKFVLMFATVIVVCNSVS--IPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGY 140
            MK  L+ AT+  VC++ S  +PVE+K D+ KLC  IFKKVN  I     +  I+ T+ +EC I FM   KW+K+C+AFVDNVVKPQLEG++GH VPPKQTCR LGY
Sbjct:    1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000730 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592766460|gb|GAXK01188108.1|5.659e+027.03TSA: Calanus finmarchicus comp10792_c6_seq2 transc... [more]

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BLAST of EMLSAG00000000730 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000007308.287e-103100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:1230... [more]
EMLSAP000000116671.527e-6587.62pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664... [more]
EMLSAP000000007231.078e-3656.60pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254... [more]
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BLAST of EMLSAG00000000730 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000730 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1117supercontigLSalAtl2s1117:123079..123572 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1117-augustus-gene-1.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000730 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000730EMLSAT00000000730-696577Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1117:123079..123572-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000730-683496 ID=EMLSAG00000000730-683496|Name=EMLSAG00000000730|organism=Lepeophtheirus salmonis|type=gene|length=494bp|location=Sequence derived from alignment at LSalAtl2s1117:123079..123572- (Lepeophtheirus salmonis)
ATGATAAGAAATGATTCTGATTTAACTATAAAAACACAAGAAAACGATAC
ATGGAGTACAAAAGAATTTAATTCTCGAAGAAGACAACAAGACTCTAAAT
TATACAAAATGAAGTTCGTTTTGATGTTTGCAACTGTTATTGTTGTTTGC
AACTCTGTTTCCATCCCAGTTGAGGAAAAGTTGGACAACTGTAAGCTCTG
CGAATTCATTTTTAAGAAGGTGAACGCTGCAATTGCCGATGGATTAGGCG
TGGGTAAAATTGTCGATACCATGAAAATCGTAGGATATACATACTTTATC
AACTATCTATATTTATCCAACCTCTCTGTTACATTTTAATTTTGCAGGAA
TGTAAGATCTTCTTTATGTATCGTCCTAAATGGGAGAAGAAATGTTATGC
ATTTGTAGATAACGTTGTGAAACCACAGCTTGAGGGCCTCATGGGACATA
TTGTTCCTCCCAAACAGACTTGTAGACTCCTTGGCTATTGTTAA
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