EMLSAG00000000775, EMLSAG00000000775-683541 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000775
Unique NameEMLSAG00000000775-683541
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000775 vs. C. finmarchicus
Match: gi|592887209|gb|GAXK01071166.1| (TSA: Calanus finmarchicus comp2036492_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.708e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:   11 TEDIVVAGNNIPNTSIIKWENDRNDLYCLMN 41
            T+D  V  N +  + +I++EN+RND Y + N
Sbjct:  231 TDDYEVKKNEVETSELIQYENERNDKYEVRN 323
[Close]
BLAST of EMLSAG00000000775 vs. L. salmonis peptides
Match: EMLSAP00000000775 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1124:54869:55594:-1 gene:EMLSAG00000000775 transcript:EMLSAT00000000775 description:"maker-LSalAtl2s1124-snap-gene-0.2")

HSP 1 Score: 389.423 bits (999), Expect = 3.106e-139
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 
Query:    1 MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
            MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK
Sbjct:    1 MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
[Close]
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Match: EFX66632.1 (hypothetical protein DAPPUDRAFT_116125 [Daphnia pulex])

HSP 1 Score: 59.6918 bits (143), Expect = 7.096e-10
Identity = 44/141 (31.21%), Postives = 61/141 (43.26%), Query Frame = 0 
Query:   63 QIDIVTYKDDGNSKVMPSYKD---------HKCGMQKRLMLCTQAHIDTE--------------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKED--VCDMDDKLCMVHNCENCPGQSNL 178
            Q  I  Y  D  S+ +P  ++          +  MQKRL+LC  A +  E                +S F  L P   V  GA GT+ VC    +QN  LM SA +   +K +  D  VC + ++ CM+  C  CPG  NL
Sbjct:  281 QTIIDFYVSDEYSRQLPGMRNVKSVKLSDGQRIKMQKRLLLCNIADLHIEYKKKMNLTTGSRKPFGFSIFVSLRPSHVVTVGAGGTHSVCVCVYHQNVKLMLSAIDVVNEKNLFMDKIVCSVHNQECMMDRCAACPGTENL 421
[Close]
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Match: EFX75283.1 (hypothetical protein DAPPUDRAFT_108106 [Daphnia pulex])

HSP 1 Score: 58.151 bits (139), Expect = 2.210e-9
Identity = 43/141 (30.50%), Postives = 63/141 (44.68%), Query Frame = 0 
Query:   69 YKDDGNSKVMPSYKDHKC---------GMQKRLMLCTQAHIDTE-------------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKED--VCDMDDKLCMVHNCENCPGQSNLAKKVLEL 185
            Y  D  S+ +P  K  K           +QKRL+L     +  E             + +S FA L PK  +  G+SGT+ VC    +QN  LM S+     ++ +  D  VC + +K CM+  C NCPG + L   + EL
Sbjct:  290 YISDEYSRQLPGMKSVKSVKQADGKRLKVQKRLLLLNIDELHGEYKKKFKDIVGIKTVGFSAFADLRPKHVITVGSSGTHSVCVCVYHQNVKLMLSSIGLGEERHLLMDKVVCSVYNKTCMLSGCPNCPGSNALESFLEEL 430
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BLAST of EMLSAG00000000775 vs. nr
Match: gi|828211841|ref|XP_012558793.1| (PREDICTED: uncharacterized protein LOC105845505 [Hydra vulgaris])

HSP 1 Score: 88.1965 bits (217), Expect = 4.498e-17
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 0 
Query:   76 KVMPSYKDH-----KCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAR--EFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            + MP  KD+         QK+L+LC    +         + +ISYSKFA L PK C+LPGASGT+ VC    +QN +L+  A   E  YK  + + VC +++K CM+  C+NCPG+  L   + E+F
Sbjct:  297 RTMPGKKDYVSIQKNVHKQKKLLLCNLKELYVLYKENNPEIQISYSKFASLRPKWCILPGASGTHSVCVCSYHQNAILLVDALNIELTYKDLLLKTVCSVENKECMLAQCDNCPGKELLTMYLYEIF 423
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828201392|ref|XP_012555235.1| (PREDICTED: uncharacterized protein LOC105843872 [Hydra vulgaris])

HSP 1 Score: 87.8113 bits (216), Expect = 4.505e-17
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 0 
Query:   76 KVMPSYKDH-----KCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAR--EFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            + MP  KD+         QK+L+LC    +         + +ISYSKFA L PK C+LPGASGT+ VC    +QN +L+  A   E  YK  + + VC +++K CM+  C+NCPG+  L   + E+F
Sbjct:  297 RTMPGKKDYVSIQKNVHKQKKLLLCNLKELYVLYKENNPEIQISYSKFASLRPKWCILPGASGTHSVCVCSYHQNAILLVDALNIELTYKDLLLKTVCSVENKECMLAQCDNCPGKELLTMYLYEIF 423
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828198869|ref|XP_012554407.1| (PREDICTED: uncharacterized protein LOC105843508, partial [Hydra vulgaris])

HSP 1 Score: 88.1965 bits (217), Expect = 5.360e-17
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 0 
Query:   76 KVMPSYKDH-----KCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAR--EFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            + MP  KD+         QK+L+LC    +         + +ISYSKFA L PK C+LPGASGT+ VC    +QN +L+  A   E  YK  + + VC +++K CM+  C+NCPG+  L   + E+F
Sbjct:  297 RTMPGKKDYVSIQKNVHKQKKLLLCNLKELYVLYKENNPEIQISYSKFASLRPKWCILPGASGTHSVCVCSYHQNAILLVDALNIELTYKDLLLKTVCSVENKECMLAQCDNCPGKELLTMYLYEIF 423
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828219851|ref|XP_002156985.3| (PREDICTED: uncharacterized protein LOC100214782 [Hydra vulgaris])

HSP 1 Score: 84.7297 bits (208), Expect = 7.077e-16
Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 0 
Query:   76 KVMPSYKDH-----KCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAR--EFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            + MP  KD+         QK+L+LC    +         + +ISYSKFA L PK C+L GASGT+ VC    +QN +L+  A   E  YK  + + VC +++K CM+  C+NCPG+  L   + E+F
Sbjct:  119 RTMPGKKDYVSIQKNVHKQKKLLLCNLKELYVLYKENNPEIQISYSKFASLRPKWCILLGASGTHSVCVCSYHQNAILLVDALNIELTYKDLLLKTVCSVENKECMLAQCDNCPGKELLTMYLYEIF 245
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828224304|ref|XP_012562914.1| (PREDICTED: uncharacterized protein LOC105847716, partial [Hydra vulgaris])

HSP 1 Score: 75.485 bits (184), Expect = 1.464e-12
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 0 
Query:   69 YKDDGNSKVMPSYKD-----HKCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSA--REFDYKKRMKEDVCDMDDKLCMVHNCENCPG 174
            Y DD  S+ MP  KD      K  M K+L+LC    +           +I +SKF  L PK C+L G  GT+ VC   ++QN  LM SA   E  Y + +K+ VC    K+CM+H C +CPG
Sbjct:  162 YCDDEYSRQMPGKKDCVSVGGKKYMSKKLILCNLKELYVAYKTKYPGHKIGFSKFCSLRPKWCILAGPKGTHSVCVRTIHQNVKLMLSAIGLEPSYHEIIKKIVCSRKSKVCMIHRCNSCPG 283
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828198727|ref|XP_012554357.1| (PREDICTED: uncharacterized protein LOC105843484 [Hydra vulgaris])

HSP 1 Score: 75.0998 bits (183), Expect = 1.606e-12
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 0 
Query:   69 YKDDGNSKVMPSYKD---HKCG--MQKRLMLCT--QAHIDTE-------ISYSKFAQLIPKCCV-LPGASGTYKVCAGFVYQNDVLMSSAREFD--YKKRMKEDVCDMDDKLCMVHNCENCPGQSNL 178
            ++ D  S++MP  KD    K G   QKRL+LC   + +ID +       I +SKF  L PK C+   G +GT+ VC    +QN +L+ +A +++  YK  M + VCD  +  CMVH C  CPG  NL
Sbjct:  181 FQQDEYSRIMPGKKDCVKVKSGPPQQKRLLLCNLHELYIDFKSKYPNCKIGFSKFCSLHPKWCINGVGPNGTHCVCVCIYHQNSILLVNAVQWNVTYKDLMSKLVCDTSNNECMVHRCAKCPGHDNL 307
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009369757|gb|KYM94330.1| (hypothetical protein ALC62_15032 [Cyphomyrmex costatus])

HSP 1 Score: 73.9442 bits (180), Expect = 3.856e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 0 
Query:   66 IVTYKDDGNSKVMPSYKDH--------KCGMQKRLML---------CTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            I  Y+ D  +++MP  KD+        K  MQKRL+L          T  +   + S+SKFA L PK CVL GASGT+ VC   +++N  L+ +                DYK  +   VC+     C +++C+ CPG SN+ K++ E F
Sbjct:   35 ISIYQSDDYTQLMPGKKDYISIKMNDSKIQMQKRLILNNLKELYEVFTSKYPTMKCSFSKFASLRPKYCVLAGASGTHSVCVCPIHENVNLLITGANLKAITNGSQQPLKDYKDCLNRMVCEGKSTECYLNSCDKCPGVSNIIKQLEEHF 184
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009380498|gb|KYN03442.1| (hypothetical protein ALC62_05718 [Cyphomyrmex costatus])

HSP 1 Score: 73.1738 bits (178), Expect = 6.089e-12
Identity = 47/147 (31.97%), Postives = 73/147 (49.66%), Query Frame = 0 
Query:   69 YKDDGNSKVMPSYKDH--------KCGMQKRLMLCTQAHIDTE---------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y  D NS++MP  KD         +  MQKRL+L     + ++         +S+SKFAQL PK C+L GA+GT+ VC   ++QN  LM  A               DYK  +++ +C+     C + +C  CPG  + ++ +L+L 
Sbjct:   31 YNSDANSRIMPGIKDVISVKVDDVRKKMQKRLLLSDLKGLFSKYKEENQGFLLSFSKFAQLRPKHCILMGAAGTHSVCVCTLHQNVKLMLDAINVKYLSQQTDRPIADYKDSLQQIMCESRSPNCHLDDCTECPGILHFSRHMLQLL 177
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828198128|ref|XP_012554130.1| (PREDICTED: uncharacterized protein LOC105843093 [Hydra vulgaris])

HSP 1 Score: 73.559 bits (179), Expect = 6.242e-12
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 0 
Query:   69 YKDDGNSKVMPSYKD-----HKCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSA--REFDYKKRMKEDVCDMDDKLCMVHNCENCPG 174
            Y DD  S+ MP  KD      K  M K+L+LC    +           +I +SKF  L PK C+L G  GT+ VC   ++QN  LM SA   E  Y + +++ VC    K+CM+H C +CPG
Sbjct:  372 YCDDEYSRQMPGKKDCVSVGGKKYMSKKLILCNLKELYVAYKTKYPGHKIGFSKFCSLRPKWCILAGPKGTHSVCVCTIHQNVKLMLSAIGLEPSYHEIIEKIVCSRKSKVCMIHRCNSCPG 493
[Close]
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009411223|gb|KYN30221.1| (hypothetical protein ALC57_00315 [Trachymyrmex cornetzi])

HSP 1 Score: 72.7886 bits (177), Expect = 9.464e-12
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 0 
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLC---------TQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNL---AKKVLE 184
            Y+ D NS+VMP  KD         +C +QKRL+L           + + D ++ +SKFAQL P+ C+L G+SGT+ VC   ++QN  LM  A               DYK  +++  C    + C +  CE CP  S L    +K+LE
Sbjct:  189 YESDTNSRVMPGMKDVISVKNEDGRCLIQKRLLLFDLRGLFLAFKENNRDIKVGFSKFAQLRPRQCILAGSSGTHSVCVCTIHQNCKLMLDAVNIKKLTEKSVKPISDYKDCLQQITCTDPSEECSLGECEKCPNISELMLIVQKLLE 336
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000775 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000775 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592887209|gb|GAXK01071166.1|1.708e+038.71TSA: Calanus finmarchicus comp2036492_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000775 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007753.106e-139100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1124:5486... [more]
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BLAST of EMLSAG00000000775 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
EFX66632.17.096e-1031.21hypothetical protein DAPPUDRAFT_116125 [Daphnia pu... [more]
EFX75283.12.210e-930.50hypothetical protein DAPPUDRAFT_108106 [Daphnia pu... [more]
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BLAST of EMLSAG00000000775 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|828211841|ref|XP_012558793.1|4.498e-1738.58PREDICTED: uncharacterized protein LOC105845505 [H... [more]
gi|828201392|ref|XP_012555235.1|4.505e-1738.58PREDICTED: uncharacterized protein LOC105843872 [H... [more]
gi|828198869|ref|XP_012554407.1|5.360e-1738.58PREDICTED: uncharacterized protein LOC105843508, p... [more]
gi|828219851|ref|XP_002156985.3|7.077e-1637.80PREDICTED: uncharacterized protein LOC100214782 [H... [more]
gi|828224304|ref|XP_012562914.1|1.464e-1238.52PREDICTED: uncharacterized protein LOC105847716, p... [more]
gi|828198727|ref|XP_012554357.1|1.606e-1238.58PREDICTED: uncharacterized protein LOC105843484 [H... [more]
gi|1009369757|gb|KYM94330.1|3.856e-1233.33hypothetical protein ALC62_15032 [Cyphomyrmex cost... [more]
gi|1009380498|gb|KYN03442.1|6.089e-1231.97hypothetical protein ALC62_05718 [Cyphomyrmex cost... [more]
gi|828198128|ref|XP_012554130.1|6.242e-1237.70PREDICTED: uncharacterized protein LOC105843093 [H... [more]
gi|1009411223|gb|KYN30221.1|9.464e-1233.78hypothetical protein ALC57_00315 [Trachymyrmex cor... [more]

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BLAST of EMLSAG00000000775 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1124supercontigLSalAtl2s1124:54869..55594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1124-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: uncharacterized protein LOC105845505 [Hydra vulgaris]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000775 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000775EMLSAT00000000775-696622Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1124:54869..55594-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000775-683541 ID=EMLSAG00000000775-683541|Name=EMLSAG00000000775|organism=Lepeophtheirus salmonis|type=gene|length=726bp|location=Sequence derived from alignment at LSalAtl2s1124:54869..55594- (Lepeophtheirus salmonis)
ATGGCTCTTGCTAAAGTTTCTGGACTTCCTACAGAAGATATTGTAGTAGC
AGGAAATAACATACCAAATACCAGCATCATTAAATGGGAAAATGACAGGA
ATGATTTGTACTGTCTCATGAATTCTCTTAAAACTAAATTCAAAATATTT
ACCTACGCAGAAAAAAAAAATCTAACTCTACCTCCCCAGTCATTGACTTT
AGCAGATATGCAAGCTTTTTTTGGGCTGCACAGAGTATACTGCAGGAAAA
GCTAGATATCTTAAAGAAAAGGGTTGGTTCACTTAATGGATACCAAAGAA
AAGTTGGAGATAGTCTTTCTAAAGAATTGATATTGTCACGTACAAAGATG
ATGGAAACTCTAAAGTCATGCCAAGCTACAAGGATCATAAATGTGGCATG
CAAAAACGTCTAATGCTTTGCACAGTGACAGAATTATACAACTTATTTAG
CAAGCACACATTGATACTGAGATAAGCTATAGTAAATTTGCRCAACTAAT
ACCAAAATGCTGTGTTCTGCCTGGAGCCTCAGGAACATACAAAGTTTGTG
CTGGTTTTGTTTACCAGAATGATGTATTAATGTCCTCAGCTCGTGAATTT
GATTACAAAAAGCGTATGAAAGAGGATGTTTGTGACATGGACGACAAACT
CTGCATGGTCCACAATTGTGAAAATTGTCCAGGCCAATCCAATTTGGCAA
AGAAAGTACTGGAACTTTTCAAATAG
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