EMLSAG00000000776, EMLSAG00000000776-683542 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000776
Unique NameEMLSAG00000000776-683542
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000776 vs. C. finmarchicus
Match: gi|592909062|gb|GAXK01049313.1| (TSA: Calanus finmarchicus comp2777209_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.781e+0
Identity = 11/34 (32.35%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   10 ERIIGIGKYEIWFLGKPIPRFPANKFPCREPEMK 43
            ER +GI ++++  +GK  P+ P + +P  +P+M+
Sbjct:  344 ERFVGIDEWKL--IGKKSPQSPQSFYPVADPDMR 439
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BLAST of EMLSAG00000000776 vs. C. finmarchicus
Match: gi|592841188|gb|GAXK01116356.1| (TSA: Calanus finmarchicus comp3313194_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.434e+0
Identity = 11/32 (34.38%), Postives = 17/32 (53.12%), Query Frame = 0 
Query:   32 ANKFPCREPEMKQCSKTIASIISDIWDEAKIP 63
            A  + C  P +KQ +  I    +D+WD  K+P
Sbjct:  643 AMSYSCVTPPIKQAAFGIYGKKNDLWDNGKVP 738
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BLAST of EMLSAG00000000776 vs. C. finmarchicus
Match: gi|592869950|gb|GAXK01087612.1| (TSA: Calanus finmarchicus comp6193209_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.645e+0
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 0 
Query:    4 YHLLDFERIIGIGKYEIWFL 23
            YHLLD   I+ I  ++IWFL
Sbjct:   30 YHLLDSTSIMIISSFKIWFL 89
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BLAST of EMLSAG00000000776 vs. L. salmonis peptides
Match: EMLSAP00000000776 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1125:20847:21295:-1 gene:EMLSAG00000000776 transcript:EMLSAT00000000776 description:"snap_masked-LSalAtl2s1125-processed-gene-0.2")

HSP 1 Score: 166.007 bits (419), Expect = 1.455e-54
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 
Query:    1 MNRYHLLDFERIIGIGKYEIWFLGKPIPRFPANKFPCREPEMKQCSKTIASIISDIWDEAKIPSITPNRKIDKLNKLHPE 80
            MNRYHLLDFERIIGIGKYEIWFLGKPIPRFPANKFPCREPEMKQCSKTIASIISDIWDEAKIPSITPNRKIDKLNKLHPE
Sbjct:    1 MNRYHLLDFERIIGIGKYEIWFLGKPIPRFPANKFPCREPEMKQCSKTIASIISDIWDEAKIPSITPNRKIDKLNKLHPE 80
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000776 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000776 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592909062|gb|GAXK01049313.1|1.781e+032.35TSA: Calanus finmarchicus comp2777209_c0_seq1 tran... [more]
gi|592841188|gb|GAXK01116356.1|2.434e+034.38TSA: Calanus finmarchicus comp3313194_c0_seq1 tran... [more]
gi|592869950|gb|GAXK01087612.1|2.645e+055.00TSA: Calanus finmarchicus comp6193209_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000776 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007761.455e-54100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1125:2084... [more]
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BLAST of EMLSAG00000000776 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000776 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000776 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000776 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1125supercontigLSalAtl2s1125:20847..21295 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1125-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000776 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000776EMLSAT00000000776-696623Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1125:20847..21295-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000776-683542 ID=EMLSAG00000000776-683542|Name=EMLSAG00000000776|organism=Lepeophtheirus salmonis|type=gene|length=449bp|location=Sequence derived from alignment at LSalAtl2s1125:20847..21295- (Lepeophtheirus salmonis)
ATGAACAGATATCATTTGTTAGAGTAAGGTATGAACTAAGGAAAGCTGCT
TTATTAAAATACGCAATTAATCATTCAACCGACTTCATTTGATCCTGCAA
TATTAACTCTATTCAAAATTATTGGAAAAGTGGATTATTTAATGAAATTA
GCATTATTTATTAATTAATTACTCTTCATTGTCTTTACAGTTTCGAGAGG
ATAATTGGCATTGGAAAGTATGAAATTTGGTTTTTAGGCAAACCAATCCC
TAGATTCCCTGCAAATAAATTTCCATGCCGTGGTGAATATATGAAAGTTA
TTTTTTATTTGCATAAATCAGAACCCGAAATGAAACAATGCTCCAAAACG
ATTGCTTCCATTATTTCTGACATCTGGGATGAGGCAAAAATACCATCTAT
CACACCAAATAGAAAAATTGATAAACTCAATAAGCTTCACCCAGAATAA
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