EMLSAG00000000780, EMLSAG00000000780-683546 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000780 vs. C. finmarchicus
Match: gi|592823428|gb|GAXK01131140.1| (TSA: Calanus finmarchicus comp1816016_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.497e-1 Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0 Query: 70 FDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISV-YSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV 151 F F T F G QP + +E+G D+ + S + ++ EP F L D+GP V L C + IFK + Sbjct: 534 FGFGTAFDMSLSSG------QPEIVENEKGLLVDFTLIGLSLNDDEIEPKFEAHLGDVGPNSVSTVKWWLNCTLQGIFKNFTI 764
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000000780 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1127:109598:110255:-1 gene:EMLSAG00000000780 transcript:EMLSAT00000000780 description:"snap_masked-LSalAtl2s1127-processed-gene-0.4") HSP 1 Score: 337.421 bits (864), Expect = 2.010e-119 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 Query: 1 MKTIIVSPLFNKLSLGILRDRIKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL 164 MKTIIVSPLFNKLSLGILRDRIKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL Sbjct: 1 MKTIIVSPLFNKLSLGILRDRIKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL 164
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000005933 (pep:novel supercontig:LSalAtl2s:LSalAtl2s320:21267:21614:-1 gene:EMLSAG00000005933 transcript:EMLSAT00000005933 description:"augustus_masked-LSalAtl2s320-processed-gene-0.0") HSP 1 Score: 115.931 bits (289), Expect = 2.817e-33 Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = 0 Query: 22 IKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKS--DKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLE 122 + TL NSQST ERI PKN ++NTI+ Y+GH FM NTQMFDF GF Q+G GKS QPW LYSERGYKGD+I VY SSIE CEP FYL+ Sbjct: 14 VDTLENSQSTVRERI----------PKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLK 106
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000001479 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1251:119741:120448:1 gene:EMLSAG00000001479 transcript:EMLSAT00000001479 description:"augustus_masked-LSalAtl2s1251-processed-gene-0.0") HSP 1 Score: 118.242 bits (295), Expect = 8.089e-33 Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQ 163 Y+G+ +N Y+TI+ Y G GFMGN Q F D + +G+ G PW LY ER Y+GD I V +S +KCEP FY++ +D G F KVSS R CFSK +FKGV VP NSTR+F KQ Sbjct: 111 YSGAGENMKYSTINFYEGSGFMGNEQYFYSDTPSLNHDNFGESIIVTGCDPWTLYEERSYRGDRICVXPASTQKCEPGFYIQPQDFGHFVNKVSSVRKGCFSKKVFKGVGVPANSTRMFTPKQ 233
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000004662 (pep:novel supercontig:LSalAtl2s:LSalAtl2s242:809507:810193:1 gene:EMLSAG00000004662 transcript:EMLSAT00000004662 description:"augustus_masked-LSalAtl2s242-processed-gene-8.1") HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-17 Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSI--EKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIF 159 Y+G+ ++T++ Y GF+GN +M+ D + +G G +PW L++E + G++I +Y SI C P F+ +D G F KV S RL CFS FKG+ + N+TR F Sbjct: 106 YSGTESGLQFDTLNFYKEPGFIGNEEMYYQDEAILTRPFFGKSIILTGCKPWTLFNETHFHGEHICIYPRSISSNNCTPGFFEAPRDFGDFVDKVRSIRLGCFSGITFKGLDLAINTTRYF 226
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003853 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2094:10695:15319:1 gene:EMLSAG00000003853 transcript:EMLSAT00000003853 description:"snap_masked-LSalAtl2s2094-processed-gene-0.1") HSP 1 Score: 72.0182 bits (175), Expect = 5.760e-16 Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTG--FSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDI 126 Y+G+ +N Y+T++ Y GFMG+ Q F F + +G G QPW LY Y+GD+I +Y SS + CEP FYLE +D Sbjct: 117 YSGANENMKYSTLNFYEESGFMGDEQYFYFDNPSLYHDNFGKSIILTGCQPWTLYEHTSYRGDHICIYPSSTQNCEPGFYLEPQDF 202 HSP 2 Score: 56.225 bits (134), Expect = 2.988e-10 Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 0 Query: 62 GFMGNTQMFDFSTG--FSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIG 127 GFMG+ Q F + + +G G QPW LY Y+GD+I +Y SS + CEP F+ E KD G Sbjct: 205 GFMGDEQYFYLNNPSFYHDNFGKSIILTGCQPWTLYEHTLYRGDHICIYPSSTQNCEPGFFPEPKDFG 272
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003799 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2069:15746:16444:1 gene:EMLSAG00000003799 transcript:EMLSAT00000003799 description:"augustus_masked-LSalAtl2s2069-processed-gene-0.2") HSP 1 Score: 67.0106 bits (162), Expect = 2.664e-14 Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0 Query: 54 TISLYNGHGFMGNTQMFDFSTGF--SAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNST 156 +I+ Y GF G + F T + +GD G PW LY E+ + GD+I VY S C P F+ L+++ F KVSS R+ CFS +P N+T Sbjct: 115 SINFYEREGFAGEEEYFSNDTPYFRKDNFGDSIIVTGCSPWTLYEEKYFAGDHICVYPSDENNCLPGFFPNLENLPQFDGKVSSVRVGCFSDRKISSPFLPANAT 219
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s175:564159:564836:1 gene:EMLSAG00000003145 transcript:EMLSAT00000003145 description:"augustus_masked-LSalAtl2s175-processed-gene-5.3") HSP 1 Score: 63.1586 bits (152), Expect = 5.551e-13 Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 0 Query: 49 NRTYNTISLYNGHGFMGNTQ-MFDFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEK-CEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVP 152 + + NT++ Y G GFMG Q ++ S + +G G +PW LY + G I VY +S+ C+P F++E D G F +VSS RL CFSK F VA P Sbjct: 107 DHSANTLNFYEGPGFMGIEQNVYKDSPKLNYDNFGKSIIITGCKPWTLYETENFGGSSICVYPNSMSSPCKPGFFVEPSDFGHFADQVSSVRLGCFSKSSF--VAKP 211
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000005478 (pep:novel supercontig:LSalAtl2s:LSalAtl2s294:475549:479341:1 gene:EMLSAG00000005478 transcript:EMLSAT00000005478 description:"snap_masked-LSalAtl2s294-processed-gene-4.12") HSP 1 Score: 55.4546 bits (132), Expect = 4.012e-10 Identity = 29/93 (31.18%), Postives = 48/93 (51.61%), Query Frame = 0 Query: 53 NTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSD--KGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143 +T++ Y GF G Q + F + + S G +PW LY ++ + GD I V+ ++C P F+ +D G FG + S+R+ CFS+ Sbjct: 117 STLNFYEKEGFGGREQYYSGDIPFLMEEMNFHSLILTGCEPWTLYDDKFFDGDRICVFPGDEDRCYPGFFPRHEDFGYFGSRXQSARIGCFSE 209
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003756 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2028:36330:37007:-1 gene:EMLSAG00000003756 transcript:EMLSAT00000003756 description:"augustus_masked-LSalAtl2s2028-processed-gene-0.0") HSP 1 Score: 54.299 bits (129), Expect = 9.225e-10 Identity = 39/103 (37.86%), Postives = 49/103 (47.57%), Query Frame = 0 Query: 53 NTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSS-SIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVP 152 NTI+ Y G GFMG Q D +G G +PW LY + + G I +Y + S C+P F + G F +VSS RL CFSK F VA P Sbjct: 111 NTINFYEGPGFMGIEQSVQRDSPKLNYDNFGKSIIITGCKPWTLYEKENFGGKKICIYPNLSSTPCKPGFLEKPSAFGNFADQVSSVRLGCFSKSSF--VAKP 211
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000001539 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1268:62804:63481:-1 gene:EMLSAG00000001539 transcript:EMLSAT00000001539 description:"augustus_masked-LSalAtl2s1268-processed-gene-0.1") HSP 1 Score: 52.373 bits (124), Expect = 3.856e-9 Identity = 39/103 (37.86%), Postives = 48/103 (46.60%), Query Frame = 0 Query: 53 NTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSS-SIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVP 152 NTI+ Y G GFMG Q D +G G +PW LY + + G I VY + S C+P F + G F +VSS RL CFS F VA P Sbjct: 111 NTINFYEGPGFMGIEQSVQRDSPKLNYDNFGKSIIITGCKPWTLYEKENFGGKKICVYPNFSSTPCKPGFLEKPSAFGNFADQVSSVRLGCFSMSSF--VAEP 211
BLAST of EMLSAG00000000780 vs. nr
Match: gi|290561783|gb|ADD38289.1| (Gamma-crystallin A [Lepeophtheirus salmonis]) HSP 1 Score: 120.939 bits (302), Expect = 4.797e-31 Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTG--FSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL 164 Y+G+ +N Y+T++ Y GFMG+ Q F F + +G G QPW LY Y+GD+I +Y SS + CEP FYLE +D G F KVSS R+ CFSK +FKGV VP NSTRIF KQL Sbjct: 111 YSGANENMKYSTLNFYEESGFMGDEQYFYFDNPSLYHDNFGKSIILTGCQPWTLYEHTSYRGDHICIYPSSTQNCEPGFYLEPQDFGHFVNKVSSIRMGCFSKKVFKGVGVPANSTRIFTPKQL 234
BLAST of EMLSAG00000000780 vs. nr
Match: gi|290561421|gb|ADD38111.1| (Beta-crystallin A1 [Lepeophtheirus salmonis]) HSP 1 Score: 67.0106 bits (162), Expect = 1.820e-10 Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0 Query: 54 TISLYNGHGFMGNTQMFDFSTGF--SAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNST 156 +I+ Y GF G + F T + +GD G PW LY E+ + GD+I VY S C P F+ L+++ F KVSS R+ CFS +P N+T Sbjct: 115 SINFYEREGFAGEEEYFSNDTPYFRKDNFGDSIIVTGCSPWTLYEEKYFAGDHICVYPSDENNCLPGFFPNLENLPQFDGKVSSVRVGCFSDRKISSPFLPANAT 219
BLAST of EMLSAG00000000780 vs. nr
Match: gi|290561120|gb|ADD37962.1| (Gamma-crystallin-1 [Lepeophtheirus salmonis]) HSP 1 Score: 57.7658 bits (138), Expect = 4.220e-7 Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0 Query: 53 NTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSD--KGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143 +T++ Y GF G Q + F + + S G +PW LY ++ + GD I V+ ++C P F+ +D G FG +V S+R+ CFS+ Sbjct: 117 STLNFYEKEGFGGREQYYSGDIPFLMEEMNFHSLILTGCEPWTLYDDKFFDGDRICVFPGDEDRCYPGFFPRHEDFGYFGSRVQSARIGCFSE 209
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.29 (protein:Tk09638 transcript:maker-scaffold94_size379870-snap-gene-2.29-mRNA-1 annotation:"gamma-crystallin d") HSP 1 Score: 65.0846 bits (157), Expect = 1.505e-13 Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 0 Query: 39 SHFYYAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIF 146 S +AG+P Y+ ++LY G F+G Q F D + + A++G G PW LYSE YKG+ I ++ + C P F+ + D+G VSS + C +K IF Sbjct: 128 SSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPIDLGILANVVSSVKRGCHAKAIF 237
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.32 (protein:Tk09637 transcript:maker-scaffold94_size379870-snap-gene-2.32-mRNA-1 annotation:"gamma-crystallin a") HSP 1 Score: 63.5438 bits (153), Expect = 1.324e-12 Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV-PKN---STRIFIAKQL 164 +AG+P Y+TI+ Y G FMG Q F D + F+ G G PW +Y Y+G +Y S E C P+F+ E D+G +VSS++ CFS G + P++ S+ +FIA L Sbjct: 118 FAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTENCYPSFFPEPSDLGFLSDQVSSAKKGCFSNNKIHGKTLNPEHGSSSSYVFIALAL 245 HSP 2 Score: 56.225 bits (134), Expect = 4.281e-10 Identity = 34/103 (33.01%), Postives = 51/103 (49.51%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143 ++G+P Y+TI+ Y G FMG Q F D + F+ G G PW +Y Y+G +Y S C P+F+ + D+G +VSS++ CFS Sbjct: 354 FSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPSFFPDPSDLGFLSDQVSSTKKGCFSN 456
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.28 (protein:Tk09640 transcript:maker-scaffold94_size379870-snap-gene-2.28-mRNA-1 annotation:"beta-crystallin b1") HSP 1 Score: 62.3882 bits (150), Expect = 1.439e-12 Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 0 Query: 43 YAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGD-GKSD--KGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV 151 ++G+P Y+TI+LY G FMG Q F + + Y + G+S G PW Y ++G Y S ++C PAF+ +D+G ++SS R CFSK I +G A+ Sbjct: 124 FSGAPDGYKYDTINLYEGDYFMGMEQ-FLYDDAYQMNYDNFGRSMIVTGCSPWTAYQYDNFQGYSKCFYPSDTQQCHPAFFTS-QDLGSMDRQISSLRRGCFSKDIVRGKAL 233 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000780 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000780 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
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BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 10
BLAST of EMLSAG00000000780 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000780 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000780 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 3
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1127:109598..110255- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000780-683546 ID=EMLSAG00000000780-683546|Name=EMLSAG00000000780|organism=Lepeophtheirus salmonis|type=gene|length=658bp|location=Sequence derived from alignment at LSalAtl2s1127:109598..110255- (Lepeophtheirus salmonis)back to top Add to Basket
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