EMLSAG00000000780, EMLSAG00000000780-683546 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000780
Unique NameEMLSAG00000000780-683546
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000780 vs. C. finmarchicus
Match: gi|592823428|gb|GAXK01131140.1| (TSA: Calanus finmarchicus comp1816016_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.497e-1
Identity = 24/83 (28.92%), Postives = 35/83 (42.17%), Query Frame = 0
Query:   70 FDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISV-YSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV 151
            F F T F      G      QP  + +E+G   D+  +  S + ++ EP F   L D+GP  V      L C  + IFK   +
Sbjct:  534 FGFGTAFDMSLSSG------QPEIVENEKGLLVDFTLIGLSLNDDEIEPKFEAHLGDVGPNSVSTVKWWLNCTLQGIFKNFTI 764          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000000780 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1127:109598:110255:-1 gene:EMLSAG00000000780 transcript:EMLSAT00000000780 description:"snap_masked-LSalAtl2s1127-processed-gene-0.4")

HSP 1 Score: 337.421 bits (864), Expect = 2.010e-119
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 MKTIIVSPLFNKLSLGILRDRIKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL 164
            MKTIIVSPLFNKLSLGILRDRIKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL
Sbjct:    1 MKTIIVSPLFNKLSLGILRDRIKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL 164          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000005933 (pep:novel supercontig:LSalAtl2s:LSalAtl2s320:21267:21614:-1 gene:EMLSAG00000005933 transcript:EMLSAT00000005933 description:"augustus_masked-LSalAtl2s320-processed-gene-0.0")

HSP 1 Score: 115.931 bits (289), Expect = 2.817e-33
Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = 0
Query:   22 IKTLGNSQSTFGERITRSHFYYAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKS--DKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLE 122
            + TL NSQST  ERI          PKN ++NTI+ Y+GH FM NTQMFDF  GF  Q+G GKS      QPW LYSERGYKGD+I VY SSIE CEP FYL+
Sbjct:   14 VDTLENSQSTVRERI----------PKNMSFNTINQYDGHKFMANTQMFDFGAGFFVQHGVGKSIIVAVCQPWILYSERGYKGDHIGVYCSSIENCEPGFYLK 106          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000001479 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1251:119741:120448:1 gene:EMLSAG00000001479 transcript:EMLSAT00000001479 description:"augustus_masked-LSalAtl2s1251-processed-gene-0.0")

HSP 1 Score: 118.242 bits (295), Expect = 8.089e-33
Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQ 163
            Y+G+ +N  Y+TI+ Y G GFMGN Q F  D  +     +G+     G  PW LY ER Y+GD I V  +S +KCEP FY++ +D G F  KVSS R  CFSK +FKGV VP NSTR+F  KQ
Sbjct:  111 YSGAGENMKYSTINFYEGSGFMGNEQYFYSDTPSLNHDNFGESIIVTGCDPWTLYEERSYRGDRICVXPASTQKCEPGFYIQPQDFGHFVNKVSSVRKGCFSKKVFKGVGVPANSTRMFTPKQ 233          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000004662 (pep:novel supercontig:LSalAtl2s:LSalAtl2s242:809507:810193:1 gene:EMLSAG00000004662 transcript:EMLSAT00000004662 description:"augustus_masked-LSalAtl2s242-processed-gene-8.1")

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-17
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSI--EKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIF 159
            Y+G+     ++T++ Y   GF+GN +M+  D +      +G      G +PW L++E  + G++I +Y  SI    C P F+   +D G F  KV S RL CFS   FKG+ +  N+TR F
Sbjct:  106 YSGTESGLQFDTLNFYKEPGFIGNEEMYYQDEAILTRPFFGKSIILTGCKPWTLFNETHFHGEHICIYPRSISSNNCTPGFFEAPRDFGDFVDKVRSIRLGCFSGITFKGLDLAINTTRYF 226          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003853 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2094:10695:15319:1 gene:EMLSAG00000003853 transcript:EMLSAT00000003853 description:"snap_masked-LSalAtl2s2094-processed-gene-0.1")

HSP 1 Score: 72.0182 bits (175), Expect = 5.760e-16
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTG--FSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDI 126
            Y+G+ +N  Y+T++ Y   GFMG+ Q F F     +   +G      G QPW LY    Y+GD+I +Y SS + CEP FYLE +D 
Sbjct:  117 YSGANENMKYSTLNFYEESGFMGDEQYFYFDNPSLYHDNFGKSIILTGCQPWTLYEHTSYRGDHICIYPSSTQNCEPGFYLEPQDF 202          

HSP 2 Score: 56.225 bits (134), Expect = 2.988e-10
Identity = 28/68 (41.18%), Postives = 37/68 (54.41%), Query Frame = 0
Query:   62 GFMGNTQMFDFSTG--FSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIG 127
            GFMG+ Q F  +    +   +G      G QPW LY    Y+GD+I +Y SS + CEP F+ E KD G
Sbjct:  205 GFMGDEQYFYLNNPSFYHDNFGKSIILTGCQPWTLYEHTLYRGDHICIYPSSTQNCEPGFFPEPKDFG 272          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003799 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2069:15746:16444:1 gene:EMLSAG00000003799 transcript:EMLSAT00000003799 description:"augustus_masked-LSalAtl2s2069-processed-gene-0.2")

HSP 1 Score: 67.0106 bits (162), Expect = 2.664e-14
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0
Query:   54 TISLYNGHGFMGNTQMFDFSTGF--SAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNST 156
            +I+ Y   GF G  + F   T +     +GD     G  PW LY E+ + GD+I VY S    C P F+  L+++  F  KVSS R+ CFS        +P N+T
Sbjct:  115 SINFYEREGFAGEEEYFSNDTPYFRKDNFGDSIIVTGCSPWTLYEEKYFAGDHICVYPSDENNCLPGFFPNLENLPQFDGKVSSVRVGCFSDRKISSPFLPANAT 219          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003145 (pep:novel supercontig:LSalAtl2s:LSalAtl2s175:564159:564836:1 gene:EMLSAG00000003145 transcript:EMLSAT00000003145 description:"augustus_masked-LSalAtl2s175-processed-gene-5.3")

HSP 1 Score: 63.1586 bits (152), Expect = 5.551e-13
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 0
Query:   49 NRTYNTISLYNGHGFMGNTQ-MFDFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEK-CEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVP 152
            + + NT++ Y G GFMG  Q ++  S   +   +G      G +PW LY    + G  I VY +S+   C+P F++E  D G F  +VSS RL CFSK  F  VA P
Sbjct:  107 DHSANTLNFYEGPGFMGIEQNVYKDSPKLNYDNFGKSIIITGCKPWTLYETENFGGSSICVYPNSMSSPCKPGFFVEPSDFGHFADQVSSVRLGCFSKSSF--VAKP 211          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000005478 (pep:novel supercontig:LSalAtl2s:LSalAtl2s294:475549:479341:1 gene:EMLSAG00000005478 transcript:EMLSAT00000005478 description:"snap_masked-LSalAtl2s294-processed-gene-4.12")

HSP 1 Score: 55.4546 bits (132), Expect = 4.012e-10
Identity = 29/93 (31.18%), Postives = 48/93 (51.61%), Query Frame = 0
Query:   53 NTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSD--KGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143
            +T++ Y   GF G  Q +     F  +  +  S    G +PW LY ++ + GD I V+    ++C P F+   +D G FG +  S+R+ CFS+
Sbjct:  117 STLNFYEKEGFGGREQYYSGDIPFLMEEMNFHSLILTGCEPWTLYDDKFFDGDRICVFPGDEDRCYPGFFPRHEDFGYFGSRXQSARIGCFSE 209          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000003756 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2028:36330:37007:-1 gene:EMLSAG00000003756 transcript:EMLSAT00000003756 description:"augustus_masked-LSalAtl2s2028-processed-gene-0.0")

HSP 1 Score: 54.299 bits (129), Expect = 9.225e-10
Identity = 39/103 (37.86%), Postives = 49/103 (47.57%), Query Frame = 0
Query:   53 NTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSS-SIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVP 152
            NTI+ Y G GFMG  Q    D        +G      G +PW LY +  + G  I +Y + S   C+P F  +    G F  +VSS RL CFSK  F  VA P
Sbjct:  111 NTINFYEGPGFMGIEQSVQRDSPKLNYDNFGKSIIITGCKPWTLYEKENFGGKKICIYPNLSSTPCKPGFLEKPSAFGNFADQVSSVRLGCFSKSSF--VAKP 211          
BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Match: EMLSAP00000001539 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1268:62804:63481:-1 gene:EMLSAG00000001539 transcript:EMLSAT00000001539 description:"augustus_masked-LSalAtl2s1268-processed-gene-0.1")

HSP 1 Score: 52.373 bits (124), Expect = 3.856e-9
Identity = 39/103 (37.86%), Postives = 48/103 (46.60%), Query Frame = 0
Query:   53 NTISLYNGHGFMGNTQMF--DFSTGFSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSS-SIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVP 152
            NTI+ Y G GFMG  Q    D        +G      G +PW LY +  + G  I VY + S   C+P F  +    G F  +VSS RL CFS   F  VA P
Sbjct:  111 NTINFYEGPGFMGIEQSVQRDSPKLNYDNFGKSIIITGCKPWTLYEKENFGGKKICVYPNFSSTPCKPGFLEKPSAFGNFADQVSSVRLGCFSMSSF--VAEP 211          
BLAST of EMLSAG00000000780 vs. nr
Match: gi|290561783|gb|ADD38289.1| (Gamma-crystallin A [Lepeophtheirus salmonis])

HSP 1 Score: 120.939 bits (302), Expect = 4.797e-31
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTG--FSAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNSTRIFIAKQL 164
            Y+G+ +N  Y+T++ Y   GFMG+ Q F F     +   +G      G QPW LY    Y+GD+I +Y SS + CEP FYLE +D G F  KVSS R+ CFSK +FKGV VP NSTRIF  KQL
Sbjct:  111 YSGANENMKYSTLNFYEESGFMGDEQYFYFDNPSLYHDNFGKSIILTGCQPWTLYEHTSYRGDHICIYPSSTQNCEPGFYLEPQDFGHFVNKVSSIRMGCFSKKVFKGVGVPANSTRIFTPKQL 234          
BLAST of EMLSAG00000000780 vs. nr
Match: gi|290561421|gb|ADD38111.1| (Beta-crystallin A1 [Lepeophtheirus salmonis])

HSP 1 Score: 67.0106 bits (162), Expect = 1.820e-10
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0
Query:   54 TISLYNGHGFMGNTQMFDFSTGF--SAQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAVPKNST 156
            +I+ Y   GF G  + F   T +     +GD     G  PW LY E+ + GD+I VY S    C P F+  L+++  F  KVSS R+ CFS        +P N+T
Sbjct:  115 SINFYEREGFAGEEEYFSNDTPYFRKDNFGDSIIVTGCSPWTLYEEKYFAGDHICVYPSDENNCLPGFFPNLENLPQFDGKVSSVRVGCFSDRKISSPFLPANAT 219          
BLAST of EMLSAG00000000780 vs. nr
Match: gi|290561120|gb|ADD37962.1| (Gamma-crystallin-1 [Lepeophtheirus salmonis])

HSP 1 Score: 57.7658 bits (138), Expect = 4.220e-7
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0
Query:   53 NTISLYNGHGFMGNTQMFDFSTGFSAQYGDGKSD--KGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143
            +T++ Y   GF G  Q +     F  +  +  S    G +PW LY ++ + GD I V+    ++C P F+   +D G FG +V S+R+ CFS+
Sbjct:  117 STLNFYEKEGFGGREQYYSGDIPFLMEEMNFHSLILTGCEPWTLYDDKFFDGDRICVFPGDEDRCYPGFFPRHEDFGYFGSRVQSARIGCFSE 209          
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.29 (protein:Tk09638 transcript:maker-scaffold94_size379870-snap-gene-2.29-mRNA-1 annotation:"gamma-crystallin d")

HSP 1 Score: 65.0846 bits (157), Expect = 1.505e-13
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 0
Query:   39 SHFYYAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIF 146
            S   +AG+P    Y+ ++LY G  F+G  Q F D +   + A++G      G  PW LYSE  YKG+ I ++ +    C P F+ +  D+G     VSS +  C +K IF
Sbjct:  128 SSLRFAGAPDGYNYDVLTLYAGDYFIGREQYFYDEAPQLNFAKFGRSAIVNGCSPWTLYSEDNYKGNAICLHPADESNCYPGFFPKPIDLGILANVVSSVKRGCHAKAIF 237          
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.32 (protein:Tk09637 transcript:maker-scaffold94_size379870-snap-gene-2.32-mRNA-1 annotation:"gamma-crystallin a")

HSP 1 Score: 63.5438 bits (153), Expect = 1.324e-12
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV-PKN---STRIFIAKQL 164
            +AG+P    Y+TI+ Y G  FMG  Q F D +  F+    G      G  PW +Y    Y+G    +Y S  E C P+F+ E  D+G    +VSS++  CFS     G  + P++   S+ +FIA  L
Sbjct:  118 FAGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTENCYPSFFPEPSDLGFLSDQVSSAKKGCFSNNKIHGKTLNPEHGSSSSYVFIALAL 245          

HSP 2 Score: 56.225 bits (134), Expect = 4.281e-10
Identity = 34/103 (33.01%), Postives = 51/103 (49.51%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMF-DFSTGFS-AQYGDGKSDKGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSK 143
            ++G+P    Y+TI+ Y G  FMG  Q F D +  F+    G      G  PW +Y    Y+G    +Y S    C P+F+ +  D+G    +VSS++  CFS 
Sbjct:  354 FSGAPDGYKYDTINFYEGKNFMGLEQFFYDDAPQFNYDNLGRSVIVTGCSPWTIYQYDNYQGYSACLYPSDTANCYPSFFPDPSDLGFLSDQVSSTKKGCFSN 456          
BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold94_size379870-snap-gene-2.28 (protein:Tk09640 transcript:maker-scaffold94_size379870-snap-gene-2.28-mRNA-1 annotation:"beta-crystallin b1")

HSP 1 Score: 62.3882 bits (150), Expect = 1.439e-12
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 0
Query:   43 YAGSPKNRTYNTISLYNGHGFMGNTQMFDFSTGFSAQYGD-GKSD--KGYQPWNLYSERGYKGDYISVYSSSIEKCEPAFYLELKDIGPFGVKVSSSRLECFSKYIFKGVAV 151
            ++G+P    Y+TI+LY G  FMG  Q F +   +   Y + G+S    G  PW  Y    ++G     Y S  ++C PAF+   +D+G    ++SS R  CFSK I +G A+
Sbjct:  124 FSGAPDGYKYDTINLYEGDYFMGMEQ-FLYDDAYQMNYDNFGRSMIVTGCSPWTAYQYDNFQGYSKCFYPSDTQQCHPAFFTS-QDLGSMDRQISSLRRGCFSKDIVRGKAL 233          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000780 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000780 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592823428|gb|GAXK01131140.1|1.497e-128.92TSA: Calanus finmarchicus comp1816016_c0_seq1 tran... [more]

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BLAST of EMLSAG00000000780 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 10
Match NameE-valueIdentityDescription
EMLSAP000000007802.010e-119100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1127:1095... [more]
EMLSAP000000059332.817e-3359.22pep:novel supercontig:LSalAtl2s:LSalAtl2s320:21267... [more]
EMLSAP000000014798.089e-3349.59pep:novel supercontig:LSalAtl2s:LSalAtl2s1251:1197... [more]
EMLSAP000000046624.303e-1734.71pep:novel supercontig:LSalAtl2s:LSalAtl2s242:80950... [more]
EMLSAP000000038535.760e-1640.70pep:novel supercontig:LSalAtl2s:LSalAtl2s2094:1069... [more]
EMLSAP000000037992.664e-1435.24pep:novel supercontig:LSalAtl2s:LSalAtl2s2069:1574... [more]
EMLSAP000000031455.551e-1338.32pep:novel supercontig:LSalAtl2s:LSalAtl2s175:56415... [more]
EMLSAP000000054784.012e-1031.18pep:novel supercontig:LSalAtl2s:LSalAtl2s294:47554... [more]
EMLSAP000000037569.225e-1037.86pep:novel supercontig:LSalAtl2s:LSalAtl2s2028:3633... [more]
EMLSAP000000015393.856e-937.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1268:6280... [more]
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BLAST of EMLSAG00000000780 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000780 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000780 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|290561783|gb|ADD38289.1|4.797e-3149.19Gamma-crystallin A [Lepeophtheirus salmonis][more]
gi|290561421|gb|ADD38111.1|1.820e-1035.24Beta-crystallin A1 [Lepeophtheirus salmonis][more]
gi|290561120|gb|ADD37962.1|4.220e-732.26Gamma-crystallin-1 [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000000780 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 3
Match NameE-valueIdentityDescription
maker-scaffold94_size379870-snap-gene-2.291.505e-1334.55protein:Tk09638 transcript:maker-scaffold94_size37... [more]
maker-scaffold94_size379870-snap-gene-2.321.324e-1234.38protein:Tk09637 transcript:maker-scaffold94_size37... [more]
maker-scaffold94_size379870-snap-gene-2.281.439e-1234.82protein:Tk09640 transcript:maker-scaffold94_size37... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1127supercontigLSalAtl2s1127:109598..110255 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1127-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteGamma-crystallin A [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000780 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000780EMLSAT00000000780-696627Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1127:109598..110255-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000780-683546 ID=EMLSAG00000000780-683546|Name=EMLSAG00000000780|organism=Lepeophtheirus salmonis|type=gene|length=658bp|location=Sequence derived from alignment at LSalAtl2s1127:109598..110255- (Lepeophtheirus salmonis)
ATGAAAACAATCATCGTGAGCCCCTTATTTAATAAACTTTCCCTCGGGAT TCTGAGGGACAGGATAAGTAATTTTTTTTAATCTTTAAGATTATTTAGAA CTTAAAGGAATCAACACAAAAATTCCAGCCAACTTTCCGAGTTTACATAA TTATGTTTGGACAATTTAGTCAAATCTGTAATCCTCAATTGATTTTGGAT TTCCWTCCAAGACGTATATTTTAATTGCAGAAACTTTGGGAAACTCTCAG TCTACATTCGGGGAAAGGATCACAAGATCCCACTTTTATTATGCTGGATC ACCCAAAAATAGGACATATAATACTATAAGTCTTTACAATGGACATGGAT TTATGGGTAACACACAAATGTTTGACTTCAGCACTGGCTTTTCTGCTCAA TATGGTGATGGAAAATCTGATAAGGGGTACCAACCATGGAATTTATATTC AGAAAGAGGATACAAGGGCGATTATATTTCTGTTTACTCTTCCTCTATTG AGAAATGTGAGCCTGCATTTTATCTTGAACTAAAGGATATTGGTCCTTTT GGAGTTAAGGTATCCAGTTCACGATTGGAATGTTTCTCCAAATATATTTT CAAAGGAGTAGCTGTTCCAAAAAACTCAACAAGAATTTTTATAGCAAAAC AACTCTAA
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