EMLSAG00000000798, EMLSAG00000000798-683564 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000798
Unique NameEMLSAG00000000798-683564
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000798 vs. C. finmarchicus
Match: gi|592893381|gb|GAXK01064994.1| (TSA: Calanus finmarchicus comp2617725_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 4.541e-1
Identity = 17/37 (45.95%), Postives = 19/37 (51.35%), Query Frame = 0
Query:   30 FKETRFVTNMTEGLVMRAVITLFSKKDKKCSNGAESK 66
            F   R V N  +   MRA I LF+K   K SNG  SK
Sbjct:  988 FSNARTVRNAVDRARMRAAIRLFNKATDKGSNGMVSK 1098          
BLAST of EMLSAG00000000798 vs. C. finmarchicus
Match: gi|592843280|gb|GAXK01114264.1| (TSA: Calanus finmarchicus comp1114678_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.256e+0
Identity = 20/65 (30.77%), Postives = 29/65 (44.62%), Query Frame = 0
Query:   10 LNLTILKIRILNVCLVEVFPFKETRFVTNMTE----------GLVMRAVITLFSKKDKKCSNGAE 64
            LNL    IRIL+  +  VFPF   ++VT              GL + AV   +     +C+NG +
Sbjct:  122 LNLITEFIRILDCYIAIVFPFSHQQYVTQENSLAVGACCWFIGLALSAV--FYFTGLSRCTNGCQ 310          
BLAST of EMLSAG00000000798 vs. L. salmonis peptides
Match: EMLSAP00000000798 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:123672:124423:-1 gene:EMLSAG00000000798 transcript:EMLSAT00000000798 description:"maker-LSalAtl2s1136-snap-gene-1.89")

HSP 1 Score: 196.438 bits (498), Expect = 5.193e-66
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:    1 MVHADDGEILNLTILKIRILNVCLVEVFPFKETRFVTNMTEGLVMRAVITLFSKKDKKCSNGAESKDPPSRQIAQPSSISSQWRXLRPLGASFLRK 96
            MVHADDGEILNLTILKIRILNVCLVEVFPFKETRFVTNMTEGLVMRAVITLFSKKDKKCSNGAESKDPPSRQIAQPSSISSQWRXLRPLGASFLRK
Sbjct:    1 MVHADDGEILNLTILKIRILNVCLVEVFPFKETRFVTNMTEGLVMRAVITLFSKKDKKCSNGAESKDPPSRQIAQPSSISSQWRXLRPLGASFLRK 96          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000798 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000798 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592893381|gb|GAXK01064994.1|4.541e-145.95TSA: Calanus finmarchicus comp2617725_c0_seq1 tran... [more]
gi|592843280|gb|GAXK01114264.1|2.256e+030.77TSA: Calanus finmarchicus comp1114678_c1_seq7 tran... [more]
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BLAST of EMLSAG00000000798 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007985.193e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:1236... [more]
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BLAST of EMLSAG00000000798 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000798 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000798 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000798 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:123672..124423 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-snap-gene-1.89
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000798 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000798EMLSAT00000000798-696645Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:123672..124423-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000798-683564 ID=EMLSAG00000000798-683564|Name=EMLSAG00000000798|organism=Lepeophtheirus salmonis|type=gene|length=752bp|location=Sequence derived from alignment at LSalAtl2s1136:123672..124423- (Lepeophtheirus salmonis)
ATGGTCCATGCCGATGATGGAGAGATTTTAAATCTCACTATCCTCAAAAT ACGAATTTTAAACGTGTGTTTAGTTGAAGTTTTCCCTTTTAAAGAGACTC GTTTTGTAACGAATATGACTGGTTAAAAAATAATTAAATTGTGGTGTTAA TTCATTTCAAGTTGAGTGTTATGAGAGTATACAACAAGAATTCTGTCTTA TTTTGCCTACAATTAGTCTATTTGTAAAGATTTTCGAACAATACCTTAAA GCAGATCAAATATTGGATTATATTTTCATAGTTACTTTGAGCTCATAACT TATACATGTGTTAACATAGAAACTAAATGTGATATATGTACTTTTAGAAG GATTAGTCATGCGAGCTGTCATCACATTATTTTCAAAGAAGGACAAGAAA TGCTCAAACGGAGCAGAATCGAAGGATCCTCCCTCCCGCCAGATTGCACA AGTGAGTTCATTGTCCTATCATTTAAAATTGCTGTTTAACAACTGAATAA AATTTAGATCCTTCTTGCAATTGCTTGTGCMCTCCTTAKGGGGAKGGAGG GGCTCATGMCCTCWTTTSCAGCCGCTACGTTGCCGCACTTAGCACAAGAG TTTAACATCGATCCATTAAATCCATGGCTACGTAAGGAATTTTTTATGTC AATGTGTTTAATTAAATAATAATTTATATTTAATAGCCTTCATCTATTTC ATCTCAATGGCGGKCTTTACGCCCATTGGGGGCTTCATTTCTWAGAAAAT AG
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