EMLSAG00000000799, EMLSAG00000000799-683565 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000799
Unique NameEMLSAG00000000799-683565
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592812205|gb|GAXK01142363.1| (TSA: Calanus finmarchicus comp101591_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.149e-1
Identity = 14/32 (43.75%), Postives = 16/32 (50.00%), Query Frame = 0 
Query:    2 FLIAVLAFCNLPMERYHLGDSGTKNHKKQTGN 33
            F I   A   LP    HLGDSG+ N  +Q  N
Sbjct: 1277 FSIIFFASSCLPFAISHLGDSGSTNQTRQASN 1372
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592805408|gb|GAXK01149160.1| (TSA: Calanus finmarchicus comp96011_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 5.860e-1
Identity = 17/44 (38.64%), Postives = 25/44 (56.82%), Query Frame = 0 
Query:    6 VLAFCNLPMERYHLGDSGTKN-HKKQTGNADAPIMYSAVIILGM 48
            V A    P+   HLGDSG +N  +++ G  D P+  S  ++LGM
Sbjct:  733 VTALVTFPLASSHLGDSG*QNTRRRRRGEEDRPMKTSICLMLGM 864
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592816947|gb|GAXK01137621.1| (TSA: Calanus finmarchicus comp165632_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.566e-1
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:    1 MFLIAVLAFCNLPMERYHLGDSGTKNHKKQTG 32
            + +I  LA    P+ R HLGDSG KN   QTG
Sbjct:  938 ILIIRALASSVFPLLRSHLGDSGRKN---QTG 1024
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592908448|gb|GAXK01049927.1| (TSA: Calanus finmarchicus comp30306_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.076e-1
Identity = 14/29 (48.28%), Postives = 15/29 (51.72%), Query Frame = 0 
Query:    2 FLIAVLAFCNLPMERYHLGDSGTKNHKKQ 30
            F I  LA    P+   HLGDSG KN   Q
Sbjct:  898 FSIIFLASSYFPLAINHLGDSGNKNQTTQ 984
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592842000|gb|GAXK01115544.1| (TSA: Calanus finmarchicus comp1060426_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.752e+0
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 0 
Query:    7 LAFCNLPMERYHLGDSGTKNH 27
            +AF NL   + HLGDSG K H
Sbjct: 1003 VAFSNLFFAKSHLGDSGVKTH 1065
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592921676|gb|GAXK01036699.1| (TSA: Calanus finmarchicus comp407208_c1_seq9 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.091e+0
Identity = 14/39 (35.90%), Postives = 21/39 (53.85%), Query Frame = 0 
Query:   14 MERYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISE 52
            + RYH+  S       + GNAD+   YSA +   MS++E
Sbjct:  326 ITRYHMFLSNLARTSTELGNADSSADYSAALDAIMSVTE 442
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592935715|gb|GAXK01022838.1| (TSA: Calanus finmarchicus comp946630_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.167e+0
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:    2 FLIAVLAFCNLPMERYHLGDSGTKNH 27
            FL +  A  NLP    HLGDSG  NH
Sbjct:  902 FLTSSWASLNLP*AISHLGDSGRTNH 979
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592921678|gb|GAXK01036697.1| (TSA: Calanus finmarchicus comp407208_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.419e+0
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 0 
Query:   16 RYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISE 52
            RYH+  S       + GNAD+   YSA +   MS++E
Sbjct:  498 RYHMFLSNLARTSTELGNADSSADYSAALDAIMSVTE 608
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592921683|gb|GAXK01036692.1| (TSA: Calanus finmarchicus comp407208_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.747e+0
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 0 
Query:   16 RYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISE 52
            RYH+  S       + GNAD+   YSA +   MS++E
Sbjct:  326 RYHMFLSNLARTSTELGNADSSADYSAALDAIMSVTE 436
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Match: gi|592921679|gb|GAXK01036696.1| (TSA: Calanus finmarchicus comp407208_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.810e+0
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 0 
Query:   16 RYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISE 52
            RYH+  S       + GNAD+   YSA +   MS++E
Sbjct:  326 RYHMFLSNLARTSTELGNADSSADYSAALDAIMSVTE 436
[Close]
BLAST of EMLSAG00000000799 vs. L. salmonis peptides
Match: EMLSAP00000000799 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:164884:166084:-1 gene:EMLSAG00000000799 transcript:EMLSAT00000000799 description:"maker-LSalAtl2s1136-snap-gene-1.94")

HSP 1 Score: 146.362 bits (368), Expect = 3.707e-47
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MFLIAVLAFCNLPMERYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISEVSTLQTVQKRLKMSHRE 69
            MFLIAVLAFCNLPMERYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISEVSTLQTVQKRLKMSHRE
Sbjct:    1 MFLIAVLAFCNLPMERYHLGDSGTKNHKKQTGNADAPIMYSAVIILGMSISEVSTLQTVQKRLKMSHRE 69
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000799 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000799 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 15
Match NameE-valueIdentityDescription
gi|592812205|gb|GAXK01142363.1|3.149e-143.75TSA: Calanus finmarchicus comp101591_c0_seq1 trans... [more]
gi|592805408|gb|GAXK01149160.1|5.860e-138.64TSA: Calanus finmarchicus comp96011_c0_seq1 transc... [more]
gi|592816947|gb|GAXK01137621.1|6.566e-150.00TSA: Calanus finmarchicus comp165632_c1_seq1 trans... [more]
gi|592908448|gb|GAXK01049927.1|7.076e-148.28TSA: Calanus finmarchicus comp30306_c1_seq1 transc... [more]
gi|592842000|gb|GAXK01115544.1|1.752e+057.14TSA: Calanus finmarchicus comp1060426_c0_seq1 tran... [more]
gi|592921676|gb|GAXK01036699.1|2.091e+035.90TSA: Calanus finmarchicus comp407208_c1_seq9 trans... [more]
gi|592935715|gb|GAXK01022838.1|2.167e+053.85TSA: Calanus finmarchicus comp946630_c0_seq1 trans... [more]
gi|592921678|gb|GAXK01036697.1|2.419e+037.84TSA: Calanus finmarchicus comp407208_c1_seq7 trans... [more]
gi|592921683|gb|GAXK01036692.1|2.747e+037.84TSA: Calanus finmarchicus comp407208_c1_seq2 trans... [more]
gi|592921679|gb|GAXK01036696.1|2.810e+037.84TSA: Calanus finmarchicus comp407208_c1_seq6 trans... [more]

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BLAST of EMLSAG00000000799 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007993.707e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:1648... [more]
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BLAST of EMLSAG00000000799 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000799 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000799 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000799 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:164884..166084 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-snap-gene-1.94
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000799 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000799EMLSAT00000000799-696646Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:164884..166084-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000799-683565 ID=EMLSAG00000000799-683565|Name=EMLSAG00000000799|organism=Lepeophtheirus salmonis|type=gene|length=1201bp|location=Sequence derived from alignment at LSalAtl2s1136:164884..166084- (Lepeophtheirus salmonis)
ATGTTTTTAATTGCTGTATTAGCTTTCTGCAATTTGCCCATGGAGAGATA
CCATCTGGGAGACTCCGGGACAAAAAACCACAAGAAACAAACGGGAAATG
CAGATGCACCAATTATGTACTCTGCAGTTATCATACTTGGAATGAGGTAA
ACCAAAAGTCCGAGACTGAGTATCCCTAATTGAAGGGATATACCTCCAAA
TAAAGCTGAGCAAATGGATCGCCATTTTCCGTCAACAATTTCAATGAAAT
ACACATTTGCTCCTACATTGACGGAGGTAGTTGTTACGCCTGTTAAGAAG
CGAAGAGCGGTCCATGTAATGAAATTAGGAGCAAGTGGGNCTAGAGTTCC
AAATATGCCAAGCAGTAATGTACCTATTTAAAAAAAAACCACACATAATC
GTCTTAAGAGTTATACATCAAATATATTGTATAATTTATGTAACCAAGTC
ATCCTAATTGTAACTCTTACCCAAACAAATTAAAGTTTTTCGTCCATATG
TATCTGCAATGTGTCCACTTATAAGAGCCCCAAACAAATTTCCTACAAAC
GTAATTGTTTGTGCAAGTCTCGGATAATGATCGTAATCACAAATTAAGTT
CCATCGACTCACAATAGAGTGCCTGAACTCGCTTTCATCAAATATAACTG
ATCCATTACAAGCCAAGGGATCACAGGGATCAATTAATGATGTTTCATCC
TGTAATGCAGGACATGAGTACTGGACAGGATAGGAAAAAAACTTGTTGCC
AAAATTTTGCCATGCTAAATGTCCCAATGTTAGTCCATAAACTAGTCCTA
TAAGGACTTGGTACTTTCCAATGGCACCGATTCTCTCTGTGAGGGGATCA
ATCTGTGAAGCTTTTTGTAAGAAAGCTCTTGTCTCAGGTCTTTTCTCCAT
GTTTTTATCGAATTGAAGTTCAAAGAGTCAGTAGTATAAATTCTTAGTTG
CTACATATATTCATTAATGATCAAAATTGTTATTCAAAAAGCGCTCTTTT
TAATATATCTCATATTAATATATGATATGATGATTTAATTTAATTTTAAA
CAACAATTTTGATTATTATCTTATTTCCAAGTACAAAATGAGAGTACTTT
ATCACATTTAATTAATTCAATATTGTATTATTTGAAGTATATCAGAAGTG
TCAACTTTGCAAACTGTTCAAAAGAGATTAAAAATGTCTCACAGAGAGTA
A
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