EMLSAG00000000819, EMLSAG00000000819-683585 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000819
Unique NameEMLSAG00000000819-683585
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592885959|gb|GAXK01072416.1| (TSA: Calanus finmarchicus comp922728_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 7.939e-5
Identity = 35/122 (28.69%), Postives = 57/122 (46.72%), Query Frame = 0
Query:   35 GVSYFMETSDCRFNLIPLYLIISN-SLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLE----KSDPY---YCDHAPVVIALANLIAAWVLIPLFVFV 148
            G +YF+  +     +  L  I+S  S  LA    ++ C       L  G  +   + V +LV+L WG+ V+FG   +  W  +      DP    +C++ P+V A   LI  W+LIPL + +
Sbjct:  413 GAAYFLYVAGITILVTNLVNIVSKISKHLAEKDGKVTCGEKCGLGLLTG--VSSILMVVDLVMLIWGSVVVFG--AWSSWTYDYKNYAEDPEKYNFCEYQPMVTAFVILIIKWILIPLMIML 766          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592932202|gb|GAXK01026351.1| (TSA: Calanus finmarchicus comp18486_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 1.491e-4
Identity = 29/109 (26.61%), Postives = 53/109 (48.62%), Query Frame = 0
Query:   53 YLIISNSLFLATSIFRIICLHDAVRSLRDGDL-------IGLF------IGVGNLVILCWGTFVLFG-----YGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIP 143
            YL ++  + L T++  I+       + RDG +       +GL       + + ++VIL WG+ V+FG        ++++  +  +  YC + P++ A   LI  WVLIP
Sbjct:  277 YLYVAGIVLLVTNLIHIMSRVSQYLAERDGKISCGEACGLGLLKFGSGIMTIADIVILIWGSVVVFGAWASWTDDYDEYVADTENKNYCAYEPMMYAFVILIIKWVLIP 603          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592916430|gb|GAXK01041945.1| (TSA: Calanus finmarchicus comp755706_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 2.080e-4
Identity = 37/157 (23.57%), Postives = 66/157 (42.04%), Query Frame = 0
Query:   14 WSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDL-------------IGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSD---PYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLF 154
            W + G  ++  V   I ++    SYF    DC  N    YL I   + L  +   ++ +     +  DG +             +  F+ + + + L WG+ V+F    + +W  E++      YC   P++ A   L+  WVL+P+F+ V   K F
Sbjct:   37 WLLIG-RALEQVTIGIVMVAIASSYF---DDCN-NGATTYLFIGGVIILVANFMALLLVGSKKIAEMDGKITCGEKCGLYFMASVAGFMTIVDFLTLIWGSIVVFS--AWSEWTNEEASHALDLYCAKTPMLFAFVTLVIRWVLVPVFITVACLKAF 486          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592940382|gb|GAXK01018171.1| (TSA: Calanus finmarchicus comp33930_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 3.125e-3
Identity = 30/112 (26.79%), Postives = 53/112 (47.32%), Query Frame = 0
Query:   53 YLIISNSLFLATSIFRIICLHDAVRSLRDGD----------LIGL---FIGVGNLVILCWGTFVLFG-----YGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFV 146
            YL ++  + L +++ R++ +     SL DG           LI L    + + ++VIL WG+ V+F         +E++  +     YC + P++ A   LIA W L+P  V
Sbjct:  375 YLYVAGIVLLVSNLIRLVFVVAQHLSLLDGKISNGEKWCLWLIKLCYSVVAIADVVILIWGSVVVFTAWATWTDNYEEYAADVKYYNYCAYEPMMYAFVILIAKWALVPCLV 710          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592940376|gb|GAXK01018177.1| (TSA: Calanus finmarchicus comp33930_c4_seq7 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 1.056e-2
Identity = 31/106 (29.25%), Postives = 52/106 (49.06%), Query Frame = 0
Query:   54 LIISNSLFLATSIFRIICLHDAVRSLRDGD-----LIGLFIGV---GNLVILCWGTFVLFGYGK-----FEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFV 146
            L++SN + +  ++ + I   D    +R G+     LI L  GV    ++VIL WG+ V+F         +E++  +     YC + P++ A   LIA W L+P  V
Sbjct:  295 LLVSNLIRVVFAVAKQIAELDG--KIRRGEHCCLRLINLSQGVVSIADVVILIWGSVVVFSAWATWTYNYEEYTEDVKYKNYCAYEPMMYAFVILIAKWALVPCLV 606          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592951065|gb|GAXK01007488.1| (TSA: Calanus finmarchicus comp658162_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 1.218e-2
Identity = 18/59 (30.51%), Postives = 33/59 (55.93%), Query Frame = 0
Query:   89 IGVGNLVILCWGTFVLFGYGKFEKW-NLEKSDPYYCDHAPVVIALANLIAAWVLIPLFV 146
            +G+  LV L WG+ V+FG   +  W + + +  ++C   P++ A   L+  WV+ PL +
Sbjct:  373 LGIAALVTLIWGSVVVFG--SWADWTSTDLTSQHFCKETPMMFAFVLLLINWVMFPLMI 543          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592825275|gb|GAXK01129914.1| (TSA: Calanus finmarchicus comp70264_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.261e-2
Identity = 33/115 (28.70%), Postives = 52/115 (45.22%), Query Frame = 0
Query:   53 YLIISNSLFLATSIFRIICLHDAVRSLRDGDL-----IGLFI--------GVGNLVILCWGTFVLFG--------YGKFEKWNLEKSDPY-YCDHAPVVIALANLIAAWVLIPLF 145
            YL I     L  ++  ++       + RDG++      GL++         V ++V+L WG+ V+FG        Y KF    L   D Y YC + P++ A   L+  WV+IPL 
Sbjct:  290 YLYIGGICILVANLVNVVSKVSQFMAERDGNVSCCERCGLWLLGAASGLMAVVDVVMLIWGSIVVFGAWATWTDDYDKF----LADPDIYNYCAYEPMMWAFGILVTKWVMIPLM 622          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592825278|gb|GAXK01129911.1| (TSA: Calanus finmarchicus comp70264_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.261e-2
Identity = 33/115 (28.70%), Postives = 52/115 (45.22%), Query Frame = 0
Query:   53 YLIISNSLFLATSIFRIICLHDAVRSLRDGDL-----IGLFI--------GVGNLVILCWGTFVLFG--------YGKFEKWNLEKSDPY-YCDHAPVVIALANLIAAWVLIPLF 145
            YL I     L  ++  ++       + RDG++      GL++         V ++V+L WG+ V+FG        Y KF    L   D Y YC + P++ A   L+  WV+IPL 
Sbjct:  143 YLYIGGICILVANLVNVVSKVSQFMAERDGNVSCCERCGLWLLGAASGLMAVVDVVMLIWGSIVVFGAWATWTDDYDKF----LADPDIYNYCAYEPMMWAFGILVTKWVMIPLM 475          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592825279|gb|GAXK01129910.1| (TSA: Calanus finmarchicus comp70264_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.333e-2
Identity = 33/115 (28.70%), Postives = 52/115 (45.22%), Query Frame = 0
Query:   53 YLIISNSLFLATSIFRIICLHDAVRSLRDGDL-----IGLFI--------GVGNLVILCWGTFVLFG--------YGKFEKWNLEKSDPY-YCDHAPVVIALANLIAAWVLIPLF 145
            YL I     L  ++  ++       + RDG++      GL++         V ++V+L WG+ V+FG        Y KF    L   D Y YC + P++ A   L+  WV+IPL 
Sbjct:  250 YLYIGGICILVANLVNVVSKVSQFMAERDGNVSCCERCGLWLLGAASGLMAVVDVVMLIWGSIVVFGAWATWTDDYDKF----LADPDIYNYCAYEPMMWAFGILVTKWVMIPLM 582          
BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592940378|gb|GAXK01018175.1| (TSA: Calanus finmarchicus comp33930_c4_seq5 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 1.566e-2
Identity = 20/63 (31.75%), Postives = 33/63 (52.38%), Query Frame = 0
Query:   89 IGVGNLVILCWGTFVLFG-----YGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFV 146
            + + +LVIL WG+ V+F         +E++  +     YC + P++ A   LIA W L+P  V
Sbjct:  446 VAIADLVILIWGSVVVFTAWATWTDNYEEYAADVKYYNYCAYEPMMYAFVILIAKWALVPCLV 634          
BLAST of EMLSAG00000000819 vs. L. salmonis peptides
Match: EMLSAP00000000819 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:40099:40823:-1 gene:EMLSAG00000000819 transcript:EMLSAT00000000819 description:"maker-LSalAtl2s1136-augustus-gene-1.61")

HSP 1 Score: 393.66 bits (1010), Expect = 8.646e-141
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
Query:    1 PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLFRACTMRMSKSNNNPVQKRQSRIQPNGFHNASLKLNGIV 192
            PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLFRACTMRMSKSNNNPVQKRQSRIQPNGFHNASLKLNGIV
Sbjct:    1 PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLFRACTMRMSKSNNNPVQKRQSRIQPNGFHNASLKLNGIV 192          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000819 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592885959|gb|GAXK01072416.1|7.939e-528.69TSA: Calanus finmarchicus comp922728_c0_seq1 trans... [more]
gi|592932202|gb|GAXK01026351.1|1.491e-426.61TSA: Calanus finmarchicus comp18486_c2_seq1 transc... [more]
gi|592916430|gb|GAXK01041945.1|2.080e-423.57TSA: Calanus finmarchicus comp755706_c0_seq1 trans... [more]
gi|592940382|gb|GAXK01018171.1|3.125e-326.79TSA: Calanus finmarchicus comp33930_c4_seq1 transc... [more]
gi|592940376|gb|GAXK01018177.1|1.056e-229.25TSA: Calanus finmarchicus comp33930_c4_seq7 transc... [more]
gi|592951065|gb|GAXK01007488.1|1.218e-230.51TSA: Calanus finmarchicus comp658162_c0_seq2 trans... [more]
gi|592825275|gb|GAXK01129914.1|1.261e-228.70TSA: Calanus finmarchicus comp70264_c2_seq1 transc... [more]
gi|592825278|gb|GAXK01129911.1|1.261e-228.70TSA: Calanus finmarchicus comp70264_c1_seq2 transc... [more]
gi|592825279|gb|GAXK01129910.1|1.333e-228.70TSA: Calanus finmarchicus comp70264_c1_seq1 transc... [more]
gi|592940378|gb|GAXK01018175.1|1.566e-231.75TSA: Calanus finmarchicus comp33930_c4_seq5 transc... [more]

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BLAST of EMLSAG00000000819 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008198.646e-141100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:4009... [more]
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BLAST of EMLSAG00000000819 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:40099..40823 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-augustus-gene-1.61
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000819 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000819EMLSAT00000000819-696666Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:40099..40823-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000819-683585 ID=EMLSAG00000000819-683585|Name=EMLSAG00000000819|organism=Lepeophtheirus salmonis|type=gene|length=725bp|location=Sequence derived from alignment at LSalAtl2s1136:40099..40823- (Lepeophtheirus salmonis)
CCTACCAAAGTATATCAGTACAATAAGCCCTCACTCTTATGGTCCATTTT TGGATTTCCGAGTGTGTCAACGGTCCTGACAAATATTGCTCTTCTCTACT GTGGCGTCAGTTATTTTATGGAAACATCAGACTGTCGGTTCAACCTCATT CCTTTGTACCTCATCATTAGTAACTCCTTGTTCCTTGCCACCTCCATTTT TCGAATCATTTGTCTTCATGATGCTGTCAGGTAAATATTGGGTTGTTATT TACAAACTAAGATTGTACTCACATAACTAAGTTTAAATTCTACTTTTTGT ATTCTACATACAACTCAGATCTCTACGAGACGGGGATCTGATTGGACTAT TTATAGGAGTTGGAAATCTCGTCATTCTATGTTGGGGAACATTTGTTTTA TTTGGCTACGGTATGTACCATTTCTTTATTTAAGATTGATACAGAGTAAT TACAGAATATTTTTACAGGGAAGTTTGAAAAGTGGAATTTGGAGAAGAGC GATCCTTATTACTGTGATCATGCTCCGGTTGTGATTGCTCTTGCAAATCT AATCGCCGCTTGGGTACTCATTCCTCTCTTTGTCTTCGTTGAGCTCTACA AACTATTCAGGGCCTGTACCATGAGAATGAGTAAATCAAATAATAATCCT GTACAAAAAAGACAGAGTCGGATTCAGCCAAATGGTTTTCATAATGCCTC TCTCAAATTAAACGGCATCGTTTAA
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