EMLSAG00000000853, EMLSAG00000000853-683619 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000853
Unique NameEMLSAG00000000853-683619
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592937069|gb|GAXK01021484.1| (TSA: Calanus finmarchicus comp434077_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 1.155e-8
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0 
Query:   33 RQRVEIFLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRL----NDQLSKKIDAINKKLDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAG 135
            R R   F+E+++PY++A LSV +L ++P   S    +++  A+ +   E++ R+     + + +  D   K+L  LE   K GP   PG+ G  GR G  G  G AG
Sbjct:  251 RDRFVSFVEQAMPYILAALSVIVLVLIPALASTISKVHSVDAQGSQLEENINRVKREGQENMKQAQDIFEKRLADLER--KTGP---PGQKGSSGRSGEKGSKGDAG 556
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592920725|gb|GAXK01037650.1| (TSA: Calanus finmarchicus comp363284_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.240e-1
Identity = 15/25 (60.00%), Postives = 17/25 (68.00%), Query Frame = 0 
Query:  111 GPKGHPGEPGKRGRDGIVGLPGSAG 135
            GPKG  G PG +G DG  GLPG +G
Sbjct: 1326 GPKGQSGIPGMQGLDGRDGLPGESG 1400
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592920726|gb|GAXK01037649.1| (TSA: Calanus finmarchicus comp363284_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.271e-1
Identity = 15/25 (60.00%), Postives = 17/25 (68.00%), Query Frame = 0 
Query:  111 GPKGHPGEPGKRGRDGIVGLPGSAG 135
            GPKG  G PG +G DG  GLPG +G
Sbjct: 1326 GPKGQSGIPGMQGLDGRDGLPGESG 1400
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592805677|gb|GAXK01148891.1| (TSA: Calanus finmarchicus comp840740_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.180e-1
Identity = 26/104 (25.00%), Postives = 45/104 (43.27%), Query Frame = 0 
Query:   39 FLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRLNDQLSKKIDAINKKLDFLE-------HNSKVGPKGHPGEPGKRGRDGIVGLPGSAG 135
            +L    PYL+  L+V M+ V+      FH + T                D++  +++A+ K +  +           + G  G+PG  G++GR G+ G PG  G
Sbjct:  298 YLSCVSPYLLCFLTV-MMCVLAGAICHFH-LET----------------DKMETEMEALRKSMAMVSSTRGEKGERGEAGLSGYPGASGQKGRPGLGGFPGLKG 555
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592805676|gb|GAXK01148892.1| (TSA: Calanus finmarchicus comp840740_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.349e-1
Identity = 24/97 (24.74%), Postives = 43/97 (44.33%), Query Frame = 0 
Query:   39 FLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRLNDQLSKKIDAINKKLDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAG 135
            +L    PYL+  L+V M+ V+      FH + T   ++ +         + L + +  ++          + G  G+PG  G++GR G+ G PG  G
Sbjct:  175 YLSCVSPYLLCFLTV-MMCVLAGAICHFH-LETDKLETEM---------ETLRQSMAMVSSTRGEKGERGEAGLSGYPGASGQKGRPGLGGFPGLKG 432
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592805675|gb|GAXK01148893.1| (TSA: Calanus finmarchicus comp840740_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.028e+0
Identity = 24/97 (24.74%), Postives = 43/97 (44.33%), Query Frame = 0 
Query:   39 FLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRLNDQLSKKIDAINKKLDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAG 135
            +L    PYL+  LS+ M+ V+      FH + T   ++ +         + L + +  ++          + G  G+PG  G++GR G+ G PG  G
Sbjct:  175 YLRCVTPYLLFFLSI-MMCVLAGAICHFH-LETDKLETEM---------ETLRQSMAMVSSTRGEKGERGEAGLSGYPGASGQKGRPGLGGFPGLKG 432
[Close]
BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592863987|gb|GAXK01093575.1| (TSA: Calanus finmarchicus comp373224_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.743e+0
Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 0 
Query:  114 GHPGEPGKRGRDGIVGLPGSAG 135
            G+PG PGK G+DGI G PG  G
Sbjct:  394 GNPGTPGKNGKDGIPGNPGPQG 459
[Close]
BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592949293|gb|GAXK01009260.1| (TSA: Calanus finmarchicus comp409116_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.908e+0
Identity = 18/35 (51.43%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:  101 LDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAG 135
            +  L HN + G KG  GEPG RGR G  G  G AG
Sbjct:  276 VGMLGHNGEKGQKGDGGEPGPRGRKGDHGPRGKAG 380
[Close]
BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592949294|gb|GAXK01009259.1| (TSA: Calanus finmarchicus comp409116_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.385e+0
Identity = 18/35 (51.43%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:  101 LDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAG 135
            +  L HN + G KG  GEPG RGR G  G  G AG
Sbjct:  276 VGMLGHNGEKGQKGDGGEPGPRGRKGDHGPRGKAG 380
[Close]
BLAST of EMLSAG00000000853 vs. C. finmarchicus
Match: gi|592857406|gb|GAXK01100156.1| (TSA: Calanus finmarchicus comp7447_c8_seq4 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.568e+0
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 0 
Query:  110 VGPKGHPGEPGKRGRDGIVGLPGS 133
            VGP+G PGE GK+G  G+ G P +
Sbjct:  111 VGPRGMPGEKGKQGLPGLDGSPAN 182
[Close]
BLAST of EMLSAG00000000853 vs. L. salmonis peptides
Match: EMLSAP00000000853 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1142:96548:98438:1 gene:EMLSAG00000000853 transcript:EMLSAT00000000853 description:"maker-LSalAtl2s1142-snap-gene-1.39")

HSP 1 Score: 279.641 bits (714), Expect = 1.671e-97
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MSSNNMNSNQSNRSWSEENNSGFTNMSSFMGYRQRVEIFLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRLNDQLSKKIDAINKKLDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAGRK 137
            MSSNNMNSNQSNRSWSEENNSGFTNMSSFMGYRQRVEIFLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRLNDQLSKKIDAINKKLDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAGRK
Sbjct:    1 MSSNNMNSNQSNRSWSEENNSGFTNMSSFMGYRQRVEIFLEKSLPYLVAGLSVTMLFVVPLTFSAFHNINTKSAKSALTGESVGRLNDQLSKKIDAINKKLDFLEHNSKVGPKGHPGEPGKRGRDGIVGLPGSAGRK 137
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000853 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000853 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592937069|gb|GAXK01021484.1|1.155e-831.78TSA: Calanus finmarchicus comp434077_c0_seq1 trans... [more]
gi|592920725|gb|GAXK01037650.1|1.240e-160.00TSA: Calanus finmarchicus comp363284_c0_seq2 trans... [more]
gi|592920726|gb|GAXK01037649.1|1.271e-160.00TSA: Calanus finmarchicus comp363284_c0_seq1 trans... [more]
gi|592805677|gb|GAXK01148891.1|6.180e-125.00TSA: Calanus finmarchicus comp840740_c0_seq1 trans... [more]
gi|592805676|gb|GAXK01148892.1|6.349e-124.74TSA: Calanus finmarchicus comp840740_c0_seq2 trans... [more]
gi|592805675|gb|GAXK01148893.1|1.028e+024.74TSA: Calanus finmarchicus comp840740_c0_seq3 trans... [more]
gi|592863987|gb|GAXK01093575.1|2.743e+063.64TSA: Calanus finmarchicus comp373224_c0_seq1 trans... [more]
gi|592949293|gb|GAXK01009260.1|2.908e+051.43TSA: Calanus finmarchicus comp409116_c0_seq2 trans... [more]
gi|592949294|gb|GAXK01009259.1|3.385e+051.43TSA: Calanus finmarchicus comp409116_c0_seq1 trans... [more]
gi|592857406|gb|GAXK01100156.1|3.568e+054.17TSA: Calanus finmarchicus comp7447_c8_seq4 transcr... [more]

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BLAST of EMLSAG00000000853 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008531.671e-97100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1142:9654... [more]
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BLAST of EMLSAG00000000853 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000853 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000853 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000853 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1142supercontigLSalAtl2s1142:96548..98438 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1142-snap-gene-1.39
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000853 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000853EMLSAT00000000853-696700Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1142:96548..98438+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000853-683619 ID=EMLSAG00000000853-683619|Name=EMLSAG00000000853|organism=Lepeophtheirus salmonis|type=gene|length=1891bp|location=Sequence derived from alignment at LSalAtl2s1142:96548..98438+ (Lepeophtheirus salmonis)
CAAAAAAACATTTTGTATGTTTTTTGGGATATTATATTTTCAATTTTAGA
TTCATTAAGCCTTTACTTCTCTCCAACATAGATATGAGTTAAATTATATG
TATATTGATAATAAATTAATTCATGTAATAGACACAAATGTAGGTGTATA
AATTTGAGTGTTATTAGCGTGACAAAAATACACTTATCACAACAGACTCA
TATTCCACATATTCCCACCCCCAATGTCCTCAAGTTCCACTACACTCATT
CCTTATCTCTCATTTGGCAAAAAGTATATAGAAATGAGTCTTAAATAAAT
GAGCAGTAATAATATGAACAGTAATCAATCAAATAGAAGCTGGAGTGAGG
AGAATAACAGTGGATTTACAAATATGTCATCTTTCATGGGTTATCGTCAA
AGAGTGGAGATCTTTTTAGAAAAATCATTGCCTTATTTGGTGGCTGGTCT
TTCTGTGACAATGCTGTTTGTTGTGCCGCTAACATTTTCCGCTTTTCACA
ATATAAACACCAAAAGTAAAATGCTCATTATACATATCTCTTAGGTACCT
TGTATGTGTCTAAATGTTTTAATGTATTTTAAACTTAAGGTGCCAAGAGT
GCCTTAACTGGAGAATCAGTTGGAAGACTTAACGATCAGTTAAGCAAAAA
AATAGATGCCATTAATAAAAAACTTGATTTCCTCGAACATAATTCTAAAG
TTGGACCAAAAGGTCATCCAGGTGAACCAGGGAAAAGAGGTGATTTTTCT
AAAGTTAATTTCTAGGTATCGTTAAATTTTATGACGCTTATATTTAAAGG
GAGAGACGGAATAGTCGGATTGCCTGGATCCGCTGGAAGGAAATAAATAA
TAATGATTTTGCAAATATTATTTTTTCTATTGTTTTGCATTTTCCGATCG
TAACATTGGATTTTTTTTTTTTTTTTTTGAGGGGTTTCATTGATTACCCC
CATTCATCAATATATTTTTTTCTGATTCTTGTGGCACCTAGGTTTATATT
TTAAACTTAAATTAAATTGCCCATGTTTGTAGTATTTGCAAAAACATTAC
AATTATTTTTAATATAGAAAAGGAGATGTTGGAAGTCAAGGAGAAAAGGG
CGAAAAAGGAGACACTGGTTCTGACGGAAATCCTGGAACAAAAGGTATGT
TCTTCAATATTTATTAAATAAATCTATTTTGCAATTCGCGATAATTTAAT
TGAAGGAGATAAAGGTGAAATGGGCGAAGGAAGTGCATCAGGTACCACTG
GTCCAAAAGGCCCACCCGGACCAAAAGGAAATGATGGTCAAAAAGGTCAA
AAAGGGGATATGGGAGTTCCTGGAATGAAGGGAGATAGTGGAACTAAACC
TTCTCCACCAATAAGTGAGTGATAGTATTTTTACATATTTAAAAATTTCC
AGTCAATCATACGGTTTTTTTAATAATNNNNNNNNNNNNNCACACTCGCT
AAAGGGGATGTGAGGAAGTACAAAGTAGACTGTATTGGTAATTGCTTCAT
TCAAGTTGAAATGAAGGTTGAAAATGGAGATGCAGATCTTTATGCAAAAG
AGGATGGTGTACCAGATATACAAAATTCAAATTGTGATGATTGTCCCTTA
TGCAAATCTAGATCCTCGAGCTTAAAAGATAGTTGTCCTAATATTCAAAC
ACATCAATCTGATCACTTTTTCTTAGCGGTTGTTGCTCATAAGGCATTCA
AAACCGGAAAATTAAAGCTTTGGGGCTTTAATTTAGCAAATGTAACAGCT
CTTGGAAGTTGATTGTACTTTTTATATATTTCTACAAATTATGTTATTAA
ATATAGTGTTTTTTTATTATAAGTATATTACATAGCATTAATTTATATAA
TTAATCAATAAAACAACAATTTAACCTAAATTGAAGACAAA
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