EMLSAG00000000862, EMLSAG00000000862-683628 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000862
Unique NameEMLSAG00000000862-683628
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839405|gb|GAXK01118139.1| (TSA: Calanus finmarchicus comp124941_c2_seq54 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.275e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2117 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2200
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839406|gb|GAXK01118138.1| (TSA: Calanus finmarchicus comp124941_c2_seq53 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.277e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2154 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2237
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839410|gb|GAXK01118134.1| (TSA: Calanus finmarchicus comp124941_c2_seq49 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.324e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2154 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2237
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839411|gb|GAXK01118133.1| (TSA: Calanus finmarchicus comp124941_c2_seq48 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.326e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2143 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2226
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839415|gb|GAXK01118129.1| (TSA: Calanus finmarchicus comp124941_c2_seq44 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.347e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2117 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2200
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839416|gb|GAXK01118128.1| (TSA: Calanus finmarchicus comp124941_c2_seq43 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.347e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2143 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2226
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839417|gb|GAXK01118127.1| (TSA: Calanus finmarchicus comp124941_c2_seq42 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.347e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2154 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2237
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839418|gb|GAXK01118126.1| (TSA: Calanus finmarchicus comp124941_c2_seq41 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.349e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2143 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2226
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839419|gb|GAXK01118125.1| (TSA: Calanus finmarchicus comp124941_c2_seq40 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.349e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2143 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2226
[Close]
BLAST of EMLSAG00000000862 vs. C. finmarchicus
Match: gi|592839425|gb|GAXK01118119.1| (TSA: Calanus finmarchicus comp124941_c2_seq34 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 2.352e-2
Identity = 19/28 (67.86%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    5 RKTGTGLSGAALKSSRVGCACTELAFNF 32
            RKTG GLS  ALKSS  GC CT  AF F
Sbjct: 2154 RKTGIGLSSLALKSSIAGCPCTLFAFMF 2237
[Close]
BLAST of EMLSAG00000000862 vs. L. salmonis peptides
Match: EMLSAP00000000862 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1148:90594:92712:1 gene:EMLSAG00000000862 transcript:EMLSAT00000000862 description:"maker-LSalAtl2s1148-snap-gene-0.17")

HSP 1 Score: 334.724 bits (857), Expect = 6.116e-118
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 
Query:    1 MHLLRKTGTGLSGAALKSSRVGCACTELAFNFDFPSFFLCLASESLFSFSSLSRRFSSFNFRLSSSLRRCRFSLSHFFLCFSSNLELLGNSSPRGEAKGSTNRDLVGSFAITRGICVGIGGTLGVATGIATPFFFLCCLLCGGRLLLPCLEEASSSLELSESLPLPSACIAICSLRSL 178
            MHLLRKTGTGLSGAALKSSRVGCACTELAFNFDFPSFFLCLASESLFSFSSLSRRFSSFNFRLSSSLRRCRFSLSHFFLCFSSNLELLGNSSPRGEAKGSTNRDLVGSFAITRGICVGIGGTLGVATGIATPFFFLCCLLCGGRLLLPCLEEASSSLELSESLPLPSACIAICSLRSL
Sbjct:    1 MHLLRKTGTGLSGAALKSSRVGCACTELAFNFDFPSFFLCLASESLFSFSSLSRRFSSFNFRLSSSLRRCRFSLSHFFLCFSSNLELLGNSSPRGEAKGSTNRDLVGSFAITRGICVGIGGTLGVATGIATPFFFLCCLLCGGRLLLPCLEEASSSLELSESLPLPSACIAICSLRSL 178
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000862 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000862 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592839405|gb|GAXK01118139.1|2.275e-267.86TSA: Calanus finmarchicus comp124941_c2_seq54 tran... [more]
gi|592839406|gb|GAXK01118138.1|2.277e-267.86TSA: Calanus finmarchicus comp124941_c2_seq53 tran... [more]
gi|592839410|gb|GAXK01118134.1|2.324e-267.86TSA: Calanus finmarchicus comp124941_c2_seq49 tran... [more]
gi|592839411|gb|GAXK01118133.1|2.326e-267.86TSA: Calanus finmarchicus comp124941_c2_seq48 tran... [more]
gi|592839415|gb|GAXK01118129.1|2.347e-267.86TSA: Calanus finmarchicus comp124941_c2_seq44 tran... [more]
gi|592839416|gb|GAXK01118128.1|2.347e-267.86TSA: Calanus finmarchicus comp124941_c2_seq43 tran... [more]
gi|592839417|gb|GAXK01118127.1|2.347e-267.86TSA: Calanus finmarchicus comp124941_c2_seq42 tran... [more]
gi|592839418|gb|GAXK01118126.1|2.349e-267.86TSA: Calanus finmarchicus comp124941_c2_seq41 tran... [more]
gi|592839419|gb|GAXK01118125.1|2.349e-267.86TSA: Calanus finmarchicus comp124941_c2_seq40 tran... [more]
gi|592839425|gb|GAXK01118119.1|2.352e-267.86TSA: Calanus finmarchicus comp124941_c2_seq34 tran... [more]

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BLAST of EMLSAG00000000862 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008626.116e-118100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1148:9059... [more]
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BLAST of EMLSAG00000000862 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000862 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000862 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000862 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1148supercontigLSalAtl2s1148:90594..92712 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1148-snap-gene-0.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000862 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000862EMLSAT00000000862-696709Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1148:90594..92712+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000862-683628 ID=EMLSAG00000000862-683628|Name=EMLSAG00000000862|organism=Lepeophtheirus salmonis|type=gene|length=2119bp|location=Sequence derived from alignment at LSalAtl2s1148:90594..92712+ (Lepeophtheirus salmonis)
CTCGATTCCCAGGAACACGATATAGCCCCTCAGCATCAAGTCCTTCTTTT
TCAATATAAGTAATGCATTTGTTGAGGAAGACAGGAACAGGCTTATCAGG
AGCGGCTTTGAAGTCATCAAGAGTTGGTTGTGCTTGCACGGAATTGGCTT
TCAATTTTGATTTTCCCTCCTTTTTTCTTTGTTTGGCCTCTGAGTCCCTC
TTTTCCTTTTCTTCTTTAAGTCGACGTTTCTCATCCTTCAATTTTCGTCT
TTCGTCATCTTTGAGGCGCTGTCGGTTCTCTTTGTCCCATTTCTTCCTTT
GTTTTTCGTCAAACTTGGAACTACTAGGAAACTCATCTCCTCGGGGGGAA
GCCAAGGGATCTACCAATAGTTTTGCTAAGATACCAAAAGAAAAGCCACA
TCGTTAGCATAGTGTATATTTATGAAGTAAAAGCCATTGATAAATAGGAA
TTTTTTATTTATTTTTTAGAATTGATGCTTATAAATTAATGCATTCATCA
TGCAAGTCGCAATCACATTTCATTATACAAATAAACACGGATTGGCCGAA
TTCATCAGAAAATCCAATATGCAAAAGAATAAATGGAATGGAAGAGCCTG
TTTACAAGAGAGAGATAGAATGATGGACTTCCTCCATTCCAATTGATTTA
TTTTATCATTATTATTATCGATAATAATAATAATGATTAATGTATGTATA
TGCATAGTAGTGAACGGAAAGTCAGGCAATACGACGCTATCCTTAACATT
TTAAGACAATTAATTTTAAAAAAATTAACGACGATAATATTATACGTTTG
TTCATATAAATAATATATGGTTATAGGATCAGTTTCACGAGTAAAAAGAA
GTAAAGCTTAGGCCTGTTATATTAGAAGCAACAAAAACAACAAAAATAAA
GAGGGAAAATAACAATAGAACTTGACAAGGTGGATTGGGAGCACAATAAG
TCTTCACAACATATCATCATGCATTAGATAACTTTAGAGCTCACTGTATC
ATTACGTATGTACTCTCAAAAACCACTTATATATATATATGTAAATAAAA
TATGTCTTAAAAATTGGTAGTAGAGAACATTTATGGAGCTTTCACACGTA
ATTGTGGAAAAAAGAAAAGAAAATAAAGGATACGGCACATTCATCAACTT
ACATTGTTGCGGTGAGAAAAGATCAGTGTCAAGGTCATTTTCAAAACTGG
TTTGACTGGTAAAGGTCAAGGGAGAAAAGGAGGAGATATTATGGGATGTA
ACTCTACTAGAGGGAGGGGGGATGTGATGGGGTGCTGGTGTTCCTCCTAA
GCTCCCTCCACCTCCAGAGGATGAAGAAGATTTGAGTTGTGTATACCTCA
ATCTGGKTGGAGGAGGGGGATAATAAGAGGAGGAAGATGAGGGTGGTTGC
TTCTGTTGGAGCAAAGGTACAGAAGGACAATTGTCTGAATCCTCAGAATA
GTCCGAGTTCGGCAAGGCTATTTTATAATATAAAATTATAGAAATATATT
TAATTGAACAAATAAATCATGTATGTCAGACTTTTTTTGTAAAAAAGAAG
AAATAAATAGTCCCTTTATAATTATGAGTCCAATCACTACCTCCGGTTGA
GTTTTTAAAGAAATAATATTTTCAGGCGTTATAGCAATAAGGATCCAAGT
CCAAATACGGTATTTTAACCCAAATATGATCATCCTAATTTAATTCATAT
TAATTAGCAGGAAAAAAACAAAACTAGAACACAAAACAACGCTCACCCTC
TTTGATCTTTTAAATCAATCATTGAGGGGGGATGAGATCAGATCAATATC
GAGTAGTTAAAGAGGCCATTTACTCCTTTTACAACATTAAAGACGTGCAT
AAATTTTGAAAGAATTACCTCTATCTGGTTCAATTGTAGGAGATTTAGTA
GGATCCTTTGCCATAACTCGAGGCATTTGTGTGGGCATTGGAGGAACCTT
AGGAGTAGCAACTGGTATAGCGACCCCCTTTTTCTTTCTGTGTTGTCTTT
TATGTGGAGGCCGATTGTTATTACCATGTCTGGAAGAGGCTTCATCATCA
CTGGAACTCTCAGAGTCACTCCCACTTCCGTCTGCTTGCATTGCAATTTG
TTCCCTCCGCTCTCTATGA
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