EMLSAG00000000875, EMLSAG00000000875-683641 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000875
Unique NameEMLSAG00000000875-683641
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592777732|gb|GAXK01176836.1| (TSA: Calanus finmarchicus comp140245_c8_seq6 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.027e+0
Identity = 16/55 (29.09%), Postives = 26/55 (47.27%), Query Frame = 0 
Query:   22 VLYKIVGKFLSVTQFCLLHWLLVLFPCEDITLEKDSILLQFRTHRFLDINQLLIK 76
            + ++ +  FLS +  CL H +    P + I L+K    +    HRF   NQ+  K
Sbjct:  120 IFHQPLKAFLSHSMDCLTHQV----PHQSIALQKKDSRIALFKHRFSHSNQISFK 272
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BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592909055|gb|GAXK01049320.1| (TSA: Calanus finmarchicus comp1376774_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.220e+0
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:    5 YFRLGHLLLSVQEKFQLVLYKIVGKFLSVTQF 36
            Y   GH L+ V++  QL +YK+ G   SV ++
Sbjct:  229 YCNCGHNLIKVKKVPQLSVYKLYGNIYSVRKY 324
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BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783074|gb|GAXK01171494.1| (TSA: Calanus finmarchicus comp63695_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.947e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct:  917 KIVNKFASVALFCVLASILCIF 982
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BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783075|gb|GAXK01171493.1| (TSA: Calanus finmarchicus comp63695_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.971e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct:  917 KIVNKFASVALFCVLASILCIF 982
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BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783076|gb|GAXK01171492.1| (TSA: Calanus finmarchicus comp63695_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.972e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct:  917 KIVNKFASVALFCVLASILCIF 982
[Close]
BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783077|gb|GAXK01171491.1| (TSA: Calanus finmarchicus comp63695_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.972e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct:  917 KIVNKFASVALFCVLASILCIF 982
[Close]
BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783078|gb|GAXK01171490.1| (TSA: Calanus finmarchicus comp63695_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.973e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct:  917 KIVNKFASVALFCVLASILCIF 982
[Close]
BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783079|gb|GAXK01171489.1| (TSA: Calanus finmarchicus comp63695_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.973e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct:  917 KIVNKFASVALFCVLASILCIF 982
[Close]
BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783080|gb|GAXK01171488.1| (TSA: Calanus finmarchicus comp63695_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.984e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct: 1553 KIVNKFASVALFCVLASILCIF 1618
[Close]
BLAST of EMLSAG00000000875 vs. C. finmarchicus
Match: gi|592783081|gb|GAXK01171487.1| (TSA: Calanus finmarchicus comp63695_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.984e+0
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   25 KIVGKFLSVTQFCLLHWLLVLF 46
            KIV KF SV  FC+L  +L +F
Sbjct: 1553 KIVNKFASVALFCVLASILCIF 1618
[Close]
BLAST of EMLSAG00000000875 vs. L. salmonis peptides
Match: EMLSAP00000000875 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1152:52583:52964:-1 gene:EMLSAG00000000875 transcript:EMLSAT00000000875 description:"maker-LSalAtl2s1152-snap-gene-0.22")

HSP 1 Score: 154.451 bits (389), Expect = 4.694e-50
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MIKLYFRLGHLLLSVQEKFQLVLYKIVGKFLSVTQFCLLHWLLVLFPCEDITLEKDSILLQFRTHRFLDINQLLIKGT 78
            MIKLYFRLGHLLLSVQEKFQLVLYKIVGKFLSVTQFCLLHWLLVLFPCEDITLEKDSILLQFRTHRFLDINQLLIKGT
Sbjct:    1 MIKLYFRLGHLLLSVQEKFQLVLYKIVGKFLSVTQFCLLHWLLVLFPCEDITLEKDSILLQFRTHRFLDINQLLIKGT 78
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000875 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000875 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 14
Match NameE-valueIdentityDescription
gi|592777732|gb|GAXK01176836.1|4.027e+029.09TSA: Calanus finmarchicus comp140245_c8_seq6 trans... [more]
gi|592909055|gb|GAXK01049320.1|4.220e+037.50TSA: Calanus finmarchicus comp1376774_c0_seq1 tran... [more]
gi|592783074|gb|GAXK01171494.1|6.947e+054.55TSA: Calanus finmarchicus comp63695_c0_seq12 trans... [more]
gi|592783075|gb|GAXK01171493.1|6.971e+054.55TSA: Calanus finmarchicus comp63695_c0_seq11 trans... [more]
gi|592783076|gb|GAXK01171492.1|6.972e+054.55TSA: Calanus finmarchicus comp63695_c0_seq10 trans... [more]
gi|592783077|gb|GAXK01171491.1|6.972e+054.55TSA: Calanus finmarchicus comp63695_c0_seq9 transc... [more]
gi|592783078|gb|GAXK01171490.1|6.973e+054.55TSA: Calanus finmarchicus comp63695_c0_seq8 transc... [more]
gi|592783079|gb|GAXK01171489.1|6.973e+054.55TSA: Calanus finmarchicus comp63695_c0_seq7 transc... [more]
gi|592783080|gb|GAXK01171488.1|6.984e+054.55TSA: Calanus finmarchicus comp63695_c0_seq6 transc... [more]
gi|592783081|gb|GAXK01171487.1|6.984e+054.55TSA: Calanus finmarchicus comp63695_c0_seq5 transc... [more]

Pages

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BLAST of EMLSAG00000000875 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008754.694e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1152:5258... [more]
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BLAST of EMLSAG00000000875 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000875 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000875 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000875 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1152supercontigLSalAtl2s1152:52583..52964 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1152-snap-gene-0.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000875 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000875EMLSAT00000000875-696722Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1152:52583..52964-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000875-683641 ID=EMLSAG00000000875-683641|Name=EMLSAG00000000875|organism=Lepeophtheirus salmonis|type=gene|length=382bp|location=Sequence derived from alignment at LSalAtl2s1152:52583..52964- (Lepeophtheirus salmonis)
ATGATAAAGTTATACTTTAGGCTCGGTCATCTTCTGCTCTCAGTACAAGA
GAAATTTCAGCTAGTTCTTTATAAAATTGTTGGGAAGTTCTTAAGCGTGA
CACAATTCTGTTTGTTACACTGGTTACTGGTGCTTTTCCCTTGTGAAGAT
ATTACTTTAGTCTGAAAAAGATTTTACTGTCACTATCATTTCAGGAAAAG
GATAGTATACTTCTTCAATTTAGGACACATCGTTTCCTCGACGTGTTTGA
GTAGGATGGACCCAAACAACATTGGGGTTGTTTTTTATGTAATCATTCTG
ATAGAGCATCATATTTTATTCAAGTAGTAATTTAATTCATAATAATCTAT
AGATTAATCAACTCTTAATTAAAGGAACATGA
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