EMLSAG00000000881, EMLSAG00000000881-683647 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000881
Unique NameEMLSAG00000000881-683647
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592764021|gb|GAXK01190547.1| (TSA: Calanus finmarchicus comp991360_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 9.121e-2
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:   13 GSPLNLSDIQAAYLTNILQIVKYY-VIILVPCNFAGNI 49
            G+P NL++  A +L    Q+ +Y  +++L PCNFA NI
Sbjct:   78 GTPSNLTERNATFL----QLPQYQKLLVLEPCNFASNI 179
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BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592764023|gb|GAXK01190545.1| (TSA: Calanus finmarchicus comp991360_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.184e-1
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:   13 GSPLNLSDIQAAYLTNILQIVKYY-VIILVPCNFAGNI 49
            G+P NL++  A +L    Q+ +Y  +++L PCNFA NI
Sbjct:   78 GTPSNLTERNATFL----QLPQYQKLLVLEPCNFASNI 179
[Close]
BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592764026|gb|GAXK01190542.1| (TSA: Calanus finmarchicus comp991360_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.966e-1
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:   13 GSPLNLSDIQAAYLTNILQIVKYY-VIILVPCNFAGNI 49
            G+P NL++  A +L    Q+ +Y  +++L PCNFA NI
Sbjct:  439 GTPSNLTERNATFL----QLPQYQKLLVLEPCNFASNI 540
[Close]
BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592764027|gb|GAXK01190541.1| (TSA: Calanus finmarchicus comp991360_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.051e-1
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:   13 GSPLNLSDIQAAYLTNILQIVKYY-VIILVPCNFAGNI 49
            G+P NL++  A +L    Q+ +Y  +++L PCNFA NI
Sbjct:  502 GTPSNLTERNATFL----QLPQYQKLLVLEPCNFASNI 603
[Close]
BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592954414|gb|GAXK01004139.1| (TSA: Calanus finmarchicus comp255176_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.530e+0
Identity = 12/34 (35.29%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:    6 ILSFILFGSPLNLSDIQAAYLTNILQIVKYYVII 39
            +LSF++F S  NL          + Q++ +YVII
Sbjct:  439 LLSFVIFTSTYNLLKPNPKLWQQVFQLLPFYVII 540
[Close]
BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592954415|gb|GAXK01004138.1| (TSA: Calanus finmarchicus comp255176_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.729e+0
Identity = 12/34 (35.29%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:    6 ILSFILFGSPLNLSDIQAAYLTNILQIVKYYVII 39
            +LSF++F S  NL          + Q++ +YVII
Sbjct:  439 LLSFVIFTSTYNLLKPNPKLWQQVFQLLPFYVII 540
[Close]
BLAST of EMLSAG00000000881 vs. C. finmarchicus
Match: gi|592954416|gb|GAXK01004137.1| (TSA: Calanus finmarchicus comp255176_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.777e+0
Identity = 12/34 (35.29%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:    6 ILSFILFGSPLNLSDIQAAYLTNILQIVKYYVII 39
            +LSF++F S  NL          + Q++ +YVII
Sbjct:  439 LLSFVIFTSTYNLLKPNPKLWQQVFQLLPFYVII 540
[Close]
BLAST of EMLSAG00000000881 vs. L. salmonis peptides
Match: EMLSAP00000000881 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1152:81564:83118:-1 gene:EMLSAG00000000881 transcript:EMLSAT00000000881 description:"snap-LSalAtl2s1152-processed-gene-0.19")

HSP 1 Score: 135.961 bits (341), Expect = 3.220e-43
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 
Query:    1 MDSGRILSFILFGSPLNLSDIQAAYLTNILQIVKYYVIILVPCNFAGNIYTTINFSNRFIRFTMSAH 67
            MDSGRILSFILFGSPLNLSDIQAAYLTNILQIVKYYVIILVPCNFAGNIYTTINFSNRFIRFTMSAH
Sbjct:    1 MDSGRILSFILFGSPLNLSDIQAAYLTNILQIVKYYVIILVPCNFAGNIYTTINFSNRFIRFTMSAH 67
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000881 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000881 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592764021|gb|GAXK01190547.1|9.121e-242.11TSA: Calanus finmarchicus comp991360_c2_seq3 trans... [more]
gi|592764023|gb|GAXK01190545.1|1.184e-142.11TSA: Calanus finmarchicus comp991360_c2_seq1 trans... [more]
gi|592764026|gb|GAXK01190542.1|1.966e-142.11TSA: Calanus finmarchicus comp991360_c1_seq2 trans... [more]
gi|592764027|gb|GAXK01190541.1|2.051e-142.11TSA: Calanus finmarchicus comp991360_c1_seq1 trans... [more]
gi|592954414|gb|GAXK01004139.1|7.530e+035.29TSA: Calanus finmarchicus comp255176_c1_seq3 trans... [more]
gi|592954415|gb|GAXK01004138.1|7.729e+035.29TSA: Calanus finmarchicus comp255176_c1_seq2 trans... [more]
gi|592954416|gb|GAXK01004137.1|7.777e+035.29TSA: Calanus finmarchicus comp255176_c1_seq1 trans... [more]
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BLAST of EMLSAG00000000881 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008813.220e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1152:8156... [more]
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BLAST of EMLSAG00000000881 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000881 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000881 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000881 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1152supercontigLSalAtl2s1152:81564..83118 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1152-processed-gene-0.19
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000881 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000881EMLSAT00000000881-696728Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1152:81564..83118-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000881-683647 ID=EMLSAG00000000881-683647|Name=EMLSAG00000000881|organism=Lepeophtheirus salmonis|type=gene|length=1555bp|location=Sequence derived from alignment at LSalAtl2s1152:81564..83118- (Lepeophtheirus salmonis)
ATGGATTCAGGACGTATCCTATCATTTATTCTTTTCGGCAGTCCTTTGAA
CCTTTCTGACATGTTGCTGGCTCGATCAAAATAGTCCCTTTCAGTTTTTC
CAGCTTAACTAAACAAAGATATCTTTAAGTTAAATTAAAATAAATGAGTG
TTTTCTCGTCGTATAGGATTTTTTCTTTGCTTTTCTCAAGTTTGAAGAGG
CTATAGTTCTTATTTTCAAAAATAGAACATCAGTTTCTCCCCCAATCAAC
TTGTGCTTGACCGCTTACATCTACAAACAGTATCTTCTTTTGTAATAAAA
TTTCATTACAGACAAGCTGCTTATCTCACAAACATTCTTCAAATTGTCAA
ATACTATGTCATTATTTTGGTTCCATGTAATTTTGCCGGGAACATTTACA
CCACCATTAATTTTTCCAACAGGTAATTTTACGTCTGGGATATTTTGCAT
TATGACATATTCGCTGCCTCTTTATGTTTCTATGTAATCGGTTCGAACTT
TACTGTTTCTTGATCAAATTAATTATATAGCTAGAAGAAAAAGATAAACG
GAAAATGATTAAGAAATAATTAATAAAGTAGGAACAGTCAATTAATTTTA
ATTTCTATCTGGAGGAGTACAAGCTCCAATCACGCAACCTGTTGTTGTAA
AAAACACCATTTTTGATGATCAATTTATGTTGATCATATGAACTTTGTAT
AGTTATAAAGCTATAATATTTGTAGTAGTTAAAATTTTATAATATCATGT
TGTATTTTAAGCAACTCTTCTATTTTGGGGTAATACTTGAAATCTCCAAA
AAACGATGGAGGGAATGTATACCATTCAAGTTATGCGGCAAAATTTATTC
AATCAAAAATTATCAGTGGCAAAAATGTAAGTGGCAAATATTGCCGGCAG
AGAAAATGACCACGGCAAAACTATTTGTCACGCGTTATTTTTTGGGGTCC
TCTAATTTAATCGTTTTCTGGAATTTCCTTGTTGTATTTGTATGCATTTT
TCTTTCCTTTTTGTTATTAATTTATCCGTGTACTTTCAAAAAATAAAGGA
GTTATTTTTATATAATGTTCAAAACCGAAATATTGGTAGAGTGTCTCCAC
GTTACATTTACACTACATTTTTTTACATACCAAACTTGCTTATAAATTAC
AACTCGATTCAAAAAAAGATACATGAACAATTTAAATATTCTCTTTGAAT
CAAGAAACATGTATCTACAAACTATATTTTATAGTCTTTTCATTTATTTT
GAAACATTTCAACGACGTTTAAAGGTTTATCTTTAACAAAATAATCCATA
AAGTAATCGGATTAATTTACATAGTTTTGAAAATTACTTCGAGTATACAA
TTTAATAATAATAAAATTTAAGGTAGTTGAAATTGGTATCAAAATCAGAA
AGCTAATATACTTTGCGAAGAAAAAGAAAGGAAAAATAATCGATAATCAT
TTGTAGCTTTCTAATATGGTTTTTCTCGTTAGTTGTGCGAATATATTGTT
ATATGTTTTTTTATAATTTTCTAGATTTATAAGATTTACAATGTCAGCTC
ATTAA
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