EMLSAG00000000895, EMLSAG00000000895-683661 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000895
Unique NameEMLSAG00000000895-683661
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000895 vs. C. finmarchicus
Match: gi|592922446|gb|GAXK01035943.1| (TSA: Calanus finmarchicus comp108548_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 5.787e-4
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 0
Query:    1 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSP 55
            MSF+TE ++               T E   YDY LPH+KT+DLIGEEF  +K+ P
Sbjct: 3345 MSFMTEAAA---------------TLEYETYDYSLPHSKTVDLIGEEFI-KKEHP 3461          

HSP 2 Score: 38.891 bits (89), Expect = 2.832e-2
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0
Query:  320 STVQVQVKP--------QTLQLTGLDASKLT----VLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIK 376
            STVQ+Q+K         QT  +  +D +KLT    V+QELP+VSK+V Q+      +  +I NILE++K
Sbjct: 2733 STVQIQLKAMSSMPSSGQTFNIPTIDTTKLTGQLSVVQELPEVSKLVFQE---VKQEPDSIVNILENMK 2930          

HSP 3 Score: 37.3502 bits (85), Expect = 1.079e-1
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 0
Query:  177 GVLLCNLDELSRYIPETFYSDFNITE 202
            GVL CNLD+LS+YIP+ F  D  I E
Sbjct: 3114 GVLYCNLDDLSKYIPDNFNFDTIIPE 3191          
BLAST of EMLSAG00000000895 vs. C. finmarchicus
Match: gi|592804799|gb|GAXK01149769.1| (TSA: Calanus finmarchicus comp839136_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 2.001e-3
Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 0
Query:   33 YHLPHTKTIDLIGEEFAPR 51
            Y LPHTK IDLIGEEF PR
Sbjct:  377 YALPHTKAIDLIGEEFVPR 433          
BLAST of EMLSAG00000000895 vs. L. salmonis peptides
Match: EMLSAP00000000895 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1157:105799:107734:1 gene:EMLSAG00000000895 transcript:EMLSAT00000000895 description:"maker-LSalAtl2s1157-snap-gene-1.18")

HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 382/382 (100.00%), Postives = 382/382 (100.00%), Query Frame = 0
Query:    1 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNILTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENGVLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLTSVSALGSSSIMVSSGSPILSTTAASTSLQSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNSTVNTTSLQPVKLTTGFAYTATGEKISIQGLTDTNKNSTVQVQVKPQTLQLTGLDASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKTGSNNN 382
            MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNILTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENGVLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLTSVSALGSSSIMVSSGSPILSTTAASTSLQSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNSTVNTTSLQPVKLTTGFAYTATGEKISIQGLTDTNKNSTVQVQVKPQTLQLTGLDASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKTGSNNN
Sbjct:    1 MSFLTEVSSSAGGNNNLDYTNTQTTHESSNYDYHLPHTKTIDLIGEEFAPRKDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNILTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENGVLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLTSVSALGSSSIMVSSGSPILSTTAASTSLQSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNSTVNTTSLQPVKLTTGFAYTATGEKISIQGLTDTNKNSTVQVQVKPQTLQLTGLDASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKTGSNNN 382          
BLAST of EMLSAG00000000895 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold733_size105121-snap-gene-0.19 (protein:Tk04997 transcript:maker-scaffold733_size105121-snap-gene-0.19-mRNA-1 annotation:"hypothetical protein KGM_19023")

HSP 1 Score: 142.124 bits (357), Expect = 3.386e-37
Identity = 142/385 (36.88%), Postives = 197/385 (51.17%), Query Frame = 0
Query:   36 PHTKTIDLIGEEFAPR-KDSPTITTGSSIAIVTSSGGLPVSSTFFLNSNNI----LTTLAPLSGSNSSLLQAISASGGQVVTLPNVSSLNHHDIINSTSVSTSSVSAENSTVISTLPFNAGTHISDVMQQTSITPTTSSNSNTEENG-VLLCNLDELSRYIPETFYSDFNITEPKLDYLESKQNMSSLT-------SVSALGSSSIMVSSGSPILSTTAASTSL------------------QSPFHQSGTPITIQLPTQPQPQQGIKTLTYVQNSKNS---TVNTTSLQPVKLT-TGFAYTATGEKISIQGLTDT--NKNSTVQVQVK----PQTLQLTGL--DASKLTVLQELPDVSKVVIQDPHGKSIQNSNIGNILEDIKT 377
            P    IDLIGEEF+PR  +S  ++  S+I  V +S     S+ F      +      ++AP+S         +S S G   ++P++   N     +         S   STV   LP              S+  +      T+ENG VLLCN+DELSRYIPE FY+D N T+     LE+    S+ +       + +   S+ I+  S   IL  T+  TSL                      HQ   P  IQLPTQPQP Q +K++ Y+Q S++     +NT SLQPVKLT TG+A T++GE+I+I GL  +  NK   +Q+Q+K    PQT+QL GL  D SKLTVLQELP+ SKVVI +P+   I N +I NILE+++T
Sbjct:   10 PLENRIDLIGEEFSPRCAESLLVSAYSNIGSVVTSHATGTSTIFTTTGIPVSVVSAASMAPIS------TVIVSTSDG---SIPSIVDPN-----HHHHHHHHQTSVPLSTVTVDLP--------------SVPASGHGTVATDENGGVLLCNIDELSRYIPENFYADLNFTDAS--TLEATTVASAASTPIHSTHATAKFSSTPIISLSNGTILQATSPMTSLPLSITQPLNITQGMASLSAGHHHQMNLPTVIQLPTQPQPPQAVKSMAYLQTSRHQHTIPINTASLQPVKLTPTGYALTSSGERITIHGLDPSTLNKGHPLQIQLKHGGIPQTIQLNGLNIDTSKLTVLQELPENSKVVIHEPN--KIHNDSISNILEEMRT 362          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000895 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000895 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592922446|gb|GAXK01035943.1|5.787e-443.64TSA: Calanus finmarchicus comp108548_c1_seq1 trans... [more]
gi|592804799|gb|GAXK01149769.1|2.001e-384.21TSA: Calanus finmarchicus comp839136_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000895 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008950.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1157:1057... [more]
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BLAST of EMLSAG00000000895 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000895 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000895 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000895 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold733_size105121-snap-gene-0.193.386e-3736.88protein:Tk04997 transcript:maker-scaffold733_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1157supercontigLSalAtl2s1157:105799..107734 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1157-snap-gene-1.18
Biotypeprotein_coding
NoteHypothetical protein
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000895 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000895EMLSAT00000000895-696742Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1157:105799..107734+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000895-683661 ID=EMLSAG00000000895-683661|Name=EMLSAG00000000895|organism=Lepeophtheirus salmonis|type=gene|length=1936bp|location=Sequence derived from alignment at LSalAtl2s1157:105799..107734+ (Lepeophtheirus salmonis)
TTTGGTATCAACTCTCTCCTCAATATAATTTCTGAAAATATAAGTGATAT TATACGAACAAATTTTATAATTGGAAAGAAGAATAATTCGACTTAAGTGT TATCTTATAAAGTTTACCAAATATATTATTGTCAATTAAGAAGATCATAT GGTGGCCTGTAAATTTTATTTTGGTCAAGTGCTTATTGAAGAAAACACAT AATTTTCTCGCTAAATTTGTATAAGTATAAATTACGTTTTATGTTAAATC AAACAACGATACAATAACTGTTATTATTATGAAAGACCAGAACATTCAAT CCTAAATATTAAAAGGAAAAATAGCATTTCCACTAAGAACACTCCCAACA TGGACCATCATATTAGATACTTCCTTTATTGATCGACTAGCCAGCTGTTT CTTTCTATATTTCTTGTATAGAGAGGGGAGCTTTATGAAAGCAGGCCGGG CTTTTTATCAAGAGTTTTTTTTTGTGTGTGCTTTTTAAAAGTAAGAAATA AATAAATAAAAGAACGAATTGGACGATTGCGCATGAGTTGGATAAATTAT TTCTCCTCTTTCATCAGAATTAATTTTTAGTACAAAAGTCTACCATAAAT ATAGAAGTGTGAAATTAAAAAAATACTGACATTAATCAGGTGACTTTATG GAGCCAGTAATAAAAAAGTAACCATGAGTTTTTTAACAGAGGTATCCAGT TCAGCAGGTGGAAACAATAACTTGGACTATACGAATACACAAACAACCCA TGAATCTAGTAATTATGACTATCATTTACCACATACGAAGACAATTGATC TCATTGGTGAAGAATTTGCCCCGAGAAAAGATTCACCAACCATTACTACA GGTTCAAGTATTGCTATAGTTACTTCCTCTGGTGGTTTGCCAGTATCAAG TACATTCTTTTTAAATAGTAATAATATACTCACCACTCTAGCACCACTAT CTGGTTCAAACTCTTCTCTACTACAAGCTATTTCAGCTAGTGGAGGACAA GTTGTGACATTACCTAATGTATCATCACTAAATCATCATGATATAATAAA TTCAACTTCTGTCTCTACTTCTTCTGTTTCGGCAGAAAATTCCACTGTTA TTAGCACATTACCTTTTAATGCTGGAACCCATATTAGTGATGTTATGCAA CAAACAAGCATCACACCAACTACTTCCTCTAATTCAAACACAGAGGAAAA TGGTGTGTTGCTGTGTAATTTAGATGAACTCTCAAGGTGATATGGTATAT TTTAAATAGTTTTTGATATTAATTTTTTTAAATAGATATATTCCAGAAAC ATTTTACTCGGATTTTAATATAACAGAACCTAAACTAGATTATTTGGAAA GCAAACAAAATATGTCATCTCTGACCTCAGTATCTGCATTAGGATCATCA TCTATAATGGTATCATCTGGTAGTCCAATTCTTTCTACAACAGCTGCTTC TACGTCATTACAATCTCCTTTTCATCAATCTGGAACTCCTATTACTATAC AGCTTCCAACCCAACCTCAGCCTCAGCAAGGTATCAAAACTCTTACTTAT GTCCAAAATTCAAAAAATTCCACAGTAAATACAACTAGTCTTCAACCAGT TAAGCTTACAACTGGATTTGCTTATACGGCTACAGGTAATCTATGAAACT TTTAACCTATCTTGAAATAAAACGATTTAATTTATTTTTTTTGTTTTACA AAGGTGAAAAAATTTCGATACAAGGCTTAACTGATACTAATAAAAACTCA ACAGTTCAAGTTCAAGTTAAACCTCAAACTCTTCAATTAACAGGTTTGGA TGCATCAAAACTTACTGTTTTACAAGAATTACCAGATGTTTCTAAAGTTG TAATTCAAGATCCTCATGGTAAAAGTATTCAAAATTCTAATATTGGTAAT ATTTTAGAGGATATCAAAACTGGAAGTAATAATAAT
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