EMLSAG00000000925, EMLSAG00000000925-683691 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000925
Unique NameEMLSAG00000000925-683691
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000925 vs. C. finmarchicus
Match: gi|592843858|gb|GAXK01113686.1| (TSA: Calanus finmarchicus comp467596_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.288e+0
Identity = 16/43 (37.21%), Postives = 26/43 (60.47%), Query Frame = 0 
Query:    1 MAEKGRIKEIER-QLDLIKSLKEHYNATGNCVITPLCFKRLSS 42
            M EK ++KE+++   DL+++ +   N   NCV TP   + LSS
Sbjct: 2909 MLEKRKVKELQQCSSDLMQTSR---NINANCVSTPHATRELSS 3028
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BLAST of EMLSAG00000000925 vs. L. salmonis peptides
Match: EMLSAP00000000925 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1161:14323:14515:-1 gene:EMLSAG00000000925 transcript:EMLSAT00000000925 description:"maker-LSalAtl2s1161-snap-gene-0.16")

HSP 1 Score: 122.479 bits (306), Expect = 4.433e-38
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MAEKGRIKEIERQLDLIKSLKEHYNATGNCVITPLCFKRLSSATQGTLVSQQILFLLNC 59
            MAEKGRIKEIERQLDLIKSLKEHYNATGNCVITPLCFKRLSSATQGTLVSQQILFLLNC
Sbjct:    1 MAEKGRIKEIERQLDLIKSLKEHYNATGNCVITPLCFKRLSSATQGTLVSQQILFLLNC 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000925 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000925 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592843858|gb|GAXK01113686.1|8.288e+037.21TSA: Calanus finmarchicus comp467596_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000925 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009254.433e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1161:1432... [more]
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BLAST of EMLSAG00000000925 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000925 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000925 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000925 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1161supercontigLSalAtl2s1161:14323..14515 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1161-snap-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000925 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000925EMLSAT00000000925-696772Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1161:14323..14515-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000925-683691 ID=EMLSAG00000000925-683691|Name=EMLSAG00000000925|organism=Lepeophtheirus salmonis|type=gene|length=193bp|location=Sequence derived from alignment at LSalAtl2s1161:14323..14515- (Lepeophtheirus salmonis)
ATGGCTGAGAAAGGCGTTCTAATTACAGAGGATAAAAGAGATAGAAAGAC
AACTTGATCTGATAAAAAGCTTAAAGGAACACTATAATGCAACTGGAAAC
TGTGTAATCACTCCTTTATGTTTCAAAAGATTGAGTAGTGCTACGCAAGG
TACATTGGTCTCCCAACAAATATTGTTTCTGTTAAATTGTTAA
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