EMLSAG00000000964, EMLSAG00000000964-683730 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000964
Unique NameEMLSAG00000000964-683730
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000964 vs. C. finmarchicus
Match: gi|592763218|gb|GAXK01191349.1| (TSA: Calanus finmarchicus comp713262_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 152.91 bits (385), Expect = 9.129e-44
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = 0 
Query:    1 MELLEENILDEQTRQEEADDKFQQRNKLLAGIREGLDALLHKLYFNELNQVPSTRNSIEILTVADKKLRFLMEKLETVDIFEKKLAMEDEEFVPIGLLSDPDEILXXXXXXXXXVDSGPEEDEVPTRNYLKRQANLIVEAKSRSKRGNRRR 151
            +ELL+E+I D+Q R++ AD+K Q  NKLL GI+ GL+ +  KLY  EL   P+TRNS+E L+VA+ KL  +M +L  VDIF KKL M++E FVP GL    D + E+E+ KKEDV+SGPEE+EVPTR YLKRQ+NLI++AKSRSKRG R+R
Sbjct:  335 LELLDEDIQDQQIRKKNADEKLQLLNKLLVGIKSGLETVTKKLYAGELISTPATRNSMEQLSVAEDKLAAVMTRLLGVDIFNKKLEMDEERFVPEGLGYKTD-LFEEEEKKKEDVESGPEEEEVPTRGYLKRQSNLILDAKSRSKRGGRKR 784
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BLAST of EMLSAG00000000964 vs. C. finmarchicus
Match: gi|592763219|gb|GAXK01191348.1| (TSA: Calanus finmarchicus comp713262_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 153.295 bits (386), Expect = 6.847e-43
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = 0 
Query:    1 MELLEENILDEQTRQEEADDKFQQRNKLLAGIREGLDALLHKLYFNELNQVPSTRNSIEILTVADKKLRFLMEKLETVDIFEKKLAMEDEEFVPIGLLSDPDEILXXXXXXXXXVDSGPEEDEVPTRNYLKRQANLIVEAKSRSKRGNRRR 151
            +ELL+E+I D+Q R++ AD+K Q  NKLL GI+ GL+ +  KLY  EL   P+TRNS+E L+VA+ KL  +M +L  VDIF KKL M++E FVP GL    D + E+E+ KKEDV+SGPEE+EVPTR YLKRQ+NLI++AKSRSKRG R+R
Sbjct:  335 LELLDEDIQDQQIRKKNADEKLQLLNKLLVGIKSGLETVTKKLYAGELISTPATRNSMEQLSVAEDKLAAVMTRLLGVDIFNKKLEMDEERFVPEGLGYKTD-LFEEEEKKKEDVESGPEEEEVPTRGYLKRQSNLILDAKSRSKRGGRKR 784
[Close]
BLAST of EMLSAG00000000964 vs. C. finmarchicus
Match: gi|592751343|gb|GAXK01203070.1| (TSA: Calanus finmarchicus comp3419887_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.427e-1
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 0 
Query:   56 NSIEILTVADKKLRFLMEKLETVDIFEKKLAMEDEEFVPIGL-LSD--PDEILXXXXXXXXXVDSGPEEDEVPTRNYLKRQANLIVEAKSRSKRGNRRR 151
             S ++L +    L  L+ KL  VD+ + +  ME+  F P G   +D   D   + +K +  D D GP++DEVPTR  L RQ++L+V AK   K+  R+R
Sbjct:   97 TSSKLLGICHTGLDALLNKLLGVDLLQVQDEMEEVGFKPTGPEFADDFKDMEDQRKKRRGGDQDDGPDDDEVPTRETLMRQSDLLVNAKQGMKKTGRKR 393
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BLAST of EMLSAG00000000964 vs. L. salmonis peptides
Match: EMLSAP00000000964 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1169:42592:46306:1 gene:EMLSAG00000000964 transcript:EMLSAT00000000964 description:"maker-LSalAtl2s1169-snap-gene-0.16")

HSP 1 Score: 297.745 bits (761), Expect = 2.980e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MELLEENILDEQTRQEEADDKFQQRNKLLAGIREGLDALLHKLYFNELNQVPSTRNSIEILTVADKKLRFLMEKLETVDIFEKKLAMEDEEFVPIGLLSDPDEILEDEKDKKEDVDSGPEEDEVPTRNYLKRQANLIVEAKSRSKRGNRRR 151
            MELLEENILDEQTRQEEADDKFQQRNKLLAGIREGLDALLHKLYFNELNQVPSTRNSIEILTVADKKLRFLMEKLETVDIFEKKLAMEDEEFVPIGLLSDPDEILEDEKDKKEDVDSGPEEDEVPTRNYLKRQANLIVEAKSRSKRGNRRR
Sbjct:    1 MELLEENILDEQTRQEEADDKFQQRNKLLAGIREGLDALLHKLYFNELNQVPSTRNSIEILTVADKKLRFLMEKLETVDIFEKKLAMEDEEFVPIGLLSDPDEILEDEKDKKEDVDSGPEEDEVPTRNYLKRQANLIVEAKSRSKRGNRRR 151
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000964 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000964 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592763218|gb|GAXK01191349.1|9.129e-4458.28TSA: Calanus finmarchicus comp713262_c0_seq3 trans... [more]
gi|592763219|gb|GAXK01191348.1|6.847e-4358.28TSA: Calanus finmarchicus comp713262_c0_seq2 trans... [more]
gi|592751343|gb|GAXK01203070.1|1.427e-136.36TSA: Calanus finmarchicus comp3419887_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000964 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009642.980e-104100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1169:4259... [more]
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BLAST of EMLSAG00000000964 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000964 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000964 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000964 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1169supercontigLSalAtl2s1169:42592..46306 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1169-snap-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000964 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000964EMLSAT00000000964-696811Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1169:42592..46306+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000964-683730 ID=EMLSAG00000000964-683730|Name=EMLSAG00000000964|organism=Lepeophtheirus salmonis|type=gene|length=3715bp|location=Sequence derived from alignment at LSalAtl2s1169:42592..46306+ (Lepeophtheirus salmonis)
ATGGAAGAAATTATGGAGGAATCTTCAGAGGGTCAGAGACTTCGGTTCCT
TGAGAATGAAATCCATAAAACAAACCTAAAATTAATGGAAGGTGATGCGC
AGAATCAAAGTCTTACTTCAATTATTTATTTGTTAAATCATAAAATCTAG
GAGAAACTATTAAGAAAAAGTATGTTACTATCCTGGATATGCTCAAAAAA
GAAAGACTGACTTTTGGAAATCACTTGGAGGCTCTAGAAGGAACCCTTAA
AAAACAAGAGGAGGAAATATCTAAGTTAAAAGTATATTTTATGAAATTAT
TGTTCAAATTTGATTTGGGGTAGGACTAGAGAACGGAGGTGTTCTAAACT
TGATTTATCTAAAAAGATAAGACTGAAAAGACCTGAATCAGCATTGGCAG
ATGCGTCAGYCGGGAGMGGGCTGGYGGGMCCCGAGCCCCCCCCCCCCCAA
AAAGAAGAAATTTTTGCTCATTATTATAATTTTATTTCCAAAAAAAATTG
ATATTGAACGTAGCATCTCTATGTATTTTGGTTCGTGCTTGAAGTACATC
TTAATAAATAGTTGCGTCGTCCACAGAGCTAAGGAATTTTTCCTTAAATT
ATTTGGCCTAAAGACATTTTGCCTTCAACCATTTTGCTTTAAGACATTTG
GCCTTAAAGCCATTTTACCTCAAATATATTTGCCCATAATATATTATCAA
AAAGATTTCTAACTTGTTTTTTTTGTTTTTGTTATTTTTGGTTAAAATTT
GTCATCCCTTGGATTTTTTTAAACAAAATATGTAATTTGTATTACTATAA
AGTGCATGAAATGGTTTTATGTTAGAAAAATGATGGAATAATGTCTCAAA
ATTTCACTCCATAGATTATCAAAATGTGATGTAATGAATTCGAATCAGAG
GCAAAGTAAGTAATAAAGTTAGTGTAATAAGAAACGATTTCATTACTCAA
ATTTCCAAAAAAAGTTTTATTTTCTTAGAATAATTATAGCTTTTTAAAAT
TTATCTACAAAAAATTTTTTTTTTTCATTTTTTTAAGTATAATTTTTAAT
TCAAAAAAAAAAATCAACTTTTCCTAAACAAATGTGCATTTTTGATGTTT
TTTTCCAAAAAAAGTGATTACTTGTTATAATTGTGGTTTTTGAAATTTTT
CAAAAAAACAATTCGAAAAAAAATATATATATAATTGCTAATGCAATTGA
TACTGAAATATTAGATATTTATTTAAAAAATTCAAAGGGAACACCAAATT
CAACGAAACATAAACAATAACTACCTATAAACCTCATTTATAGGTTATTT
TGAGGCAAATAAACTTAAGGCAAAATAGTTTTTTGAAATTTTCTCTTAAA
AAATTTGATATTTGAAATTCAATTTTTGGAATTTTTTTAAATAACTGTGG
ATTTTTCAATTTTTTGGAGAATAAGCATTGATTTATTTGAAGTTTTCCAA
AAAAATTAATACAATTTTTTTTTTTAGAATAGCTGTTACATTTATAAAAA
TAGTATGGATCCTATTTTATTCAAGTCCTAAATTAGGGTAAAATACTCAT
AAAATTCGATACAATTATCCGTCTAATTTAGGATTTGTATCCTATTTGAA
TGTTCGGTTACCCGATATTTACCCAGATATATATGTATAAAGATTTGAAT
CCATACGAAAAAGTAGATCCGTCCTATTTTTGGGTAAGACTTAATAGTTA
ATTTACAGAAAACACATCATGCAGCTATAATAACACGGGATTTAGCTCGA
CAAAATCAGCACAAGATCGAAATAAGCCTTATACAAGAGGGTATTGTGTT
CCATGCATTCATCCCTGTGTATTTCATATTTTCCTTGATTTTTTTTAGGA
AAAGAGAGGGAGAAACGGATTATCGAATACCGAAAAACAACTGAGGAGAG
AAAAAACTACTTTGAGAGCATGGAAAGACATATGTTTGGGAGTAAGGCAT
CTGTCAAAGACACGGGAAGGGAGTCCATTAGTACATCGGATCATATGACT
AACAAGGAAGACATTCGATCCAGTGAGGGCGGAAGCGAATATACGGGAAT
TCAAGATGCTCATTTTGAGGAATCTTTTAACCGAATGAAAAAGGCTGCAG
GGGTGTCTGACATTGATGAGGTCGTTCATCGTTTTGAAACCCAAGAGGAA
ACGGCCAATCACTTGCAGGAACTTCAAGTAACTATTTTCCTCTGTTTTTA
ATATACATTGTGGAGATCCCAAAACTTGCAGTAGAATTTAATCACAAGGG
TTTATTACGCAACTAAACGATAGCTGTAACAAAAATAAACAAGTTTTCTA
TCTCCTCTAAAGTATTATTGCCAAGAAGGCTCTAAAGACCGTTGACATCT
CCATTTGGACTGGCTAAAATATCAATAAGTACAAAAAGTTCCATACCGTC
TATAGGAATAAGAACTTATGCAGTAACTTCTGGCTTCCGTAGATATGGCT
CTCCTCCAGCTCGGACCTCAAACCCCTAGACTTTGTAGTTTGAATACGAA
TATCGGCCGCACATCTCATCCAAATATGGATATGGTCAGAACTCTCATAG
TTAGAGCATACTGCTCTAAGAACACGACCAAAATCATCTAGAGCTGTCAA
TCTGTTCGTTGGCGTGAAGAGGCTGCTGTTACTTGTGAAGAAGGACATAT
TAAATACAAAATATTGCTAAATATAATATTTAAACATAGCACTAATTGGT
TTTGAATTTATTTCCTTTATTCTATGAAAAATAACGTTTTTTCGTAATTT
CTTCATGCTACAGCAAGTTTTGGTTCCCACTCTGTAATATAACCCTTTTT
TTATTTTTTATTATTTAGTCAAGAGCCGAAAAAGAAATACGGGATCTCGG
AAATATAAAAGACAAGCTTGAATCCGAATGGGAACAAGTCAAGTTCATGG
TCAAGTAAGGAATGATTATTATGTTGACTTATATATCAGTTGTATAAAAT
ATAATTTACTTTTTTTTTGGTAATTTTCTTTAGGAGGACAATCACGAACT
TCGTGAAAAAATGGAGTTATTGGAAGAAAATATTTTGGACGAGCAAACAC
GTCAAGAGGAAGCGGATGATAAATTTCAACAACGCAATAAACTTTTGGCA
GGAATTCGTGAAGGATTAGATGCACTTCTTCATAAACTTGTATTTACATA
TATATTTTATAAATCAAATTGAAAGATTATTTGTTGAATTTCTCATTTTT
TTTTTTTAGTACTTCAATGAGCTAAATCAAGTTCCCTCAACTCGAAACTC
CATTGAAATTCTTACAGTTGCTGACAAGAAGCTCAGATTTCTCATGGAAA
AATTGGAGACTGTTGATATTTTTGAGAAGAAATTGGCAATGGAGGATGAA
GAATTTGTTCCCATTGGTCTTTTAAGTGACCCGGATGAAATACTCGAGGA
TGAGAGTAAGTTCTTTTTAAAATTNGAATCTTGAAAGGATTAAATATAAA
TTAATGTACTTTATCTCAAAAAAGAAGATAAGAAGGAGGATGTGGACAGT
GGTCCAGAGGAGGATGAAGTCCCAACTCGGAATTATCTTAAGAGGCAAGC
CAATCTAATCGTTGAAGCAAAGAGTCGAAGCAAACGTGGGAACCGTCGCC
GATAAGTCTTTTTTTTTTTATATTATAAAGAAATCAAAATTGTAAATCTG
TTTTCAAATATTATTTATTTTCGAATAATGGGGCATGAACAAACTAAAAA
ATATGTATTATCCGC
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