EMLSAG00000000974, EMLSAG00000000974-683740 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000974
Unique NameEMLSAG00000000974-683740
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000974 vs. C. finmarchicus
Match: gi|592897589|gb|GAXK01060786.1| (TSA: Calanus finmarchicus comp172641_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.064e+0
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 0 
Query:   34 SKRILLDDVKEGREGSCSVVVNATAVVIIFAEIHSSS 70
            ++ +  DD   GRE   +V+ N+++  + F E HSSS
Sbjct: 1307 ARTLFSDDNSSGRESVTTVISNSSSETLKFNEKHSSS 1417
[Close]
BLAST of EMLSAG00000000974 vs. L. salmonis peptides
Match: EMLSAP00000000974 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:1365321:1365700:-1 gene:EMLSAG00000000974 transcript:EMLSAT00000000974 description:"maker-LSalAtl2s116-snap-gene-13.10")

HSP 1 Score: 157.147 bits (396), Expect = 3.557e-51
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MYNKLGDRERKHHMKVKAPSSLDGLLSAEAALPSKRILLDDVKEGREGSCSVVVNATAVVIIFAEIHSSSLEIPSDLG 78
            MYNKLGDRERKHHMKVKAPSSLDGLLSAEAALPSKRILLDDVKEGREGSCSVVVNATAVVIIFAEIHSSSLEIPSDLG
Sbjct:    1 MYNKLGDRERKHHMKVKAPSSLDGLLSAEAALPSKRILLDDVKEGREGSCSVVVNATAVVIIFAEIHSSSLEIPSDLG 78
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000974 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000974 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592897589|gb|GAXK01060786.1|1.064e+035.14TSA: Calanus finmarchicus comp172641_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000974 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009743.557e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:13653... [more]
back to top
BLAST of EMLSAG00000000974 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000974 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000974 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000974 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:1365321..1365700 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s116-snap-gene-13.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000974 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000974EMLSAT00000000974-696821Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:1365321..1365700-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000974-683740 ID=EMLSAG00000000974-683740|Name=EMLSAG00000000974|organism=Lepeophtheirus salmonis|type=gene|length=380bp|location=Sequence derived from alignment at LSalAtl2s116:1365321..1365700- (Lepeophtheirus salmonis)
ATGTATAATAAATTAGGAGATAGAGAAAGGAAACATCATATGAAAGTAAG
TATGTTAATGTATGTGTATCACGTGTACATGTATCCAAGGAGAGAATAAC
TTACTCATCCTCCCATGGACAGACTTCCGTTGAACTCGTCGTCCATGCTT
CAATCTCTCCTGCTCCAACACCCGTTGAATTCTTGTTTTGAGAAGCACCT
TCTTCATTGGATGGATTACTTTCTGCAGAGGCTGCATTACCTTCCAAAAG
AATCCTCTTGGATGATGTTAAAGAGGGGCGTGAAGGGAGTTGTTCAGTCG
TTGTTAATGCTACTGCAGTTGTTATTATCTTTGCAGAAATACACTCCTCA
TCTTTAGAGATTCCCTCGGACTTGGGATGA
back to top
Add to Basket