EMLSAG00000000996, EMLSAG00000000996-683762 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000996
Unique NameEMLSAG00000000996-683762
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933234|gb|GAXK01025319.1| (TSA: Calanus finmarchicus comp188551_c16_seq18 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.037e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  120 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 215
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933276|gb|GAXK01025277.1| (TSA: Calanus finmarchicus comp188551_c5_seq19 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.037e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  136 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 231
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933235|gb|GAXK01025318.1| (TSA: Calanus finmarchicus comp188551_c16_seq17 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.251e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  120 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 215
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933277|gb|GAXK01025276.1| (TSA: Calanus finmarchicus comp188551_c5_seq18 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.251e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  136 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 231
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933237|gb|GAXK01025316.1| (TSA: Calanus finmarchicus comp188551_c16_seq15 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.874e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  135 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 230
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933238|gb|GAXK01025315.1| (TSA: Calanus finmarchicus comp188551_c16_seq14 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.874e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  135 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 230
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933278|gb|GAXK01025275.1| (TSA: Calanus finmarchicus comp188551_c5_seq17 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.874e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  134 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 229
[Close]
BLAST of EMLSAG00000000996 vs. C. finmarchicus
Match: gi|592933279|gb|GAXK01025274.1| (TSA: Calanus finmarchicus comp188551_c5_seq16 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.874e+0
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 0 
Query:  215 PVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAH 247
            P+G    CP FFC + S  +  P L +HI E H
Sbjct:  134 PLGNDNLCPFFFCDKSSFDS-IPKLKKHIKEVH 229
[Close]
BLAST of EMLSAG00000000996 vs. L. salmonis peptides
Match: EMLSAP00000000996 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:203067:204785:-1 gene:EMLSAG00000000996 transcript:EMLSAT00000000996 description:"maker-LSalAtl2s116-augustus-gene-2.11")

HSP 1 Score: 909.057 bits (2348), Expect = 0.000e+0
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0 
Query:    1 MRLYLTLKECMDLSDSILVASQDSLTQKAVIFCIMDPRPYAPPLESNIQDRLIHLRRSSELKLNISPSLTESLIQHGFMSLTLLSLISDKHLRILGRLLRLDPPTIEKLKGSIEKLNEAPLEPLYSYKKYLVVRRKNKKASNRRKFLMDYLHLDEPRKHTKLKPTPPLPIKESPLPPTPTPXPSPPLPRPKDEEDEETTSTSSSSLFSYGSPHIPVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAHNPFRAQVKDFNYSSRNYGSVELEFSLGEAMRVRADSVLWFGPTEFLFDGVPFYEIVYRIPSPRKKGIKKLDVEGTGMTNCYIFWLYVGAGVKTAEKYSYVISLYKDKEHRNAQRRSVTSFESNPIAMNHRDDQSRGPAGSASYFTFEENKLKNIAFSDGTLKYFVKIFKNRLGNNNSYSSSQLSDNNYYTTKQRHNY 444
            MRLYLTLKECMDLSDSILVASQDSLTQKAVIFCIMDPRPYAPPLESNIQDRLIHLRRSSELKLNISPSLTESLIQHGFMSLTLLSLISDKHLRILGRLLRLDPPTIEKLKGSIEKLNEAPLEPLYSYKKYLVVRRKNKKASNRRKFLMDYLHLDEPRKHTKLKPTPPLPIKESPLPPTPTPXPSPPLPRPKDEEDEETTSTSSSSLFSYGSPHIPVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAHNPFRAQVKDFNYSSRNYGSVELEFSLGEAMRVRADSVLWFGPTEFLFDGVPFYEIVYRIPSPRKKGIKKLDVEGTGMTNCYIFWLYVGAGVKTAEKYSYVISLYKDKEHRNAQRRSVTSFESNPIAMNHRDDQSRGPAGSASYFTFEENKLKNIAFSDGTLKYFVKIFKNRLGNNNSYSSSQLSDNNYYTTKQRHNY
Sbjct:    1 MRLYLTLKECMDLSDSILVASQDSLTQKAVIFCIMDPRPYAPPLESNIQDRLIHLRRSSELKLNISPSLTESLIQHGFMSLTLLSLISDKHLRILGRLLRLDPPTIEKLKGSIEKLNEAPLEPLYSYKKYLVVRRKNKKASNRRKFLMDYLHLDEPRKHTKLKPTPPLPIKESPLPPTPTPXPSPPLPRPKDEEDEETTSTSSSSLFSYGSPHIPVGIYGFCPLFFCPRHSTPTEFPSLFRHIFEAHNPFRAQVKDFNYSSRNYGSVELEFSLGEAMRVRADSVLWFGPTEFLFDGVPFYEIVYRIPSPRKKGIKKLDVEGTGMTNCYIFWLYVGAGVKTAEKYSYVISLYKDKEHRNAQRRSVTSFESNPIAMNHRDDQSRGPAGSASYFTFEENKLKNIAFSDGTLKYFVKIFKNRLGNNNSYSSSQLSDNNYYTTKQRHNY 444
[Close]
BLAST of EMLSAG00000000996 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold145_size311916-snap-gene-2.21 (protein:Tk09186 transcript:maker-scaffold145_size311916-snap-gene-2.21-mRNA-1 annotation:"zinc finger protein 208-like")

HSP 1 Score: 55.0694 bits (131), Expect = 2.227e-8
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 0 
Query:   27 QKAVIFCIMDPRPYAPPLESNIQDRLIHLRRSSELKLNISPSLTESLIQHGFMSLTLLSLISDKHLRILGRLLRLDPPTIEKLKGSIEKLNEAPLEPLYSYKKYLV-VRRKNKKASNRRKFLMDYLHLDEP 156
            Q A     +DPRP+APPLES  +DR+ +LR   ++   +S S    L  +GF SL+ + LI+   +      L+L P   +K    I      PLEPLYS+K+Y   ++ +   A N     +D   L +P
Sbjct:   36 QHAYTLTALDPRPFAPPLEST-KDRVDNLRFLCQVH-KMSASGWRQLESNGFRSLSHVGLITPTQV----DRLQLSPED-QKALAKIHLKQTQPLEPLYSFKQYWASLKSRKSVAKNASLEYLDLASLAQP 159
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000996 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000996 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592933234|gb|GAXK01025319.1|3.037e+042.42TSA: Calanus finmarchicus comp188551_c16_seq18 tra... [more]
gi|592933276|gb|GAXK01025277.1|3.037e+042.42TSA: Calanus finmarchicus comp188551_c5_seq19 tran... [more]
gi|592933235|gb|GAXK01025318.1|3.251e+042.42TSA: Calanus finmarchicus comp188551_c16_seq17 tra... [more]
gi|592933277|gb|GAXK01025276.1|3.251e+042.42TSA: Calanus finmarchicus comp188551_c5_seq18 tran... [more]
gi|592933237|gb|GAXK01025316.1|4.874e+042.42TSA: Calanus finmarchicus comp188551_c16_seq15 tra... [more]
gi|592933238|gb|GAXK01025315.1|4.874e+042.42TSA: Calanus finmarchicus comp188551_c16_seq14 tra... [more]
gi|592933278|gb|GAXK01025275.1|4.874e+042.42TSA: Calanus finmarchicus comp188551_c5_seq17 tran... [more]
gi|592933279|gb|GAXK01025274.1|4.874e+042.42TSA: Calanus finmarchicus comp188551_c5_seq16 tran... [more]
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BLAST of EMLSAG00000000996 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009960.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:20306... [more]
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BLAST of EMLSAG00000000996 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000996 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000996 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000996 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold145_size311916-snap-gene-2.212.227e-833.59protein:Tk09186 transcript:maker-scaffold145_size3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:203067..204785 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s116-augustus-gene-2.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000996 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000996EMLSAT00000000996-696843Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:203067..204785-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000996-683762 ID=EMLSAG00000000996-683762|Name=EMLSAG00000000996|organism=Lepeophtheirus salmonis|type=gene|length=1719bp|location=Sequence derived from alignment at LSalAtl2s116:203067..204785- (Lepeophtheirus salmonis)
ATGCGACTGTACCTAACGTTAAAGGAATGTATGGATCTTTCAGATTCAAT
CTTGGTAGCGTCCCAGGATTCGCTTACTCAAAAGGCCGTTATATTTTGTA
TAATGGATCCAAGACCTTACGCACCTCCACTTGAATCAAATATTCAAGAT
CGACTCATTCATCTTCGTAGATCCTCCGAGCTGAAGCTGAATATATCTCC
AAGTCTCACTGAGTCTCTTATTCAGCACGGATTCATGTCTCTTACTCTAT
TAAGCCTAATATCAGATAAACATTTGAGAATTCTGGGAAGGCTTCTTCGA
CTGGATCCTCCTACGATTGAGAAACTAAAAGGCTCGATTGAGAAGTTGAA
TGAGGCTCCTTTAGAACCATTATATTCATATAAGAAATACTTGGTAGTTA
GGTATGTACAATACATAGACGTAAGTAGTAACTTAACAACCAGATGAGGC
TCATAGAGCTGATGGGATTTGATTAATTAAAATGGGTCTCATATGATAAT
ATTAGTACTTATTTTTATGTATGTAGGTCTCAAACCCATTGTAGAAATGT
TTCTCTATTTTATTATTTTGACCATTAATCATTCTTAAATCTTGATCCAT
GCGTGGGTTTTTATAATTGACGTTACATTTATAGATTATATTTGTCTTTT
TTCGTTTAATTAACGATAGATGGGGGTAAATGTTTTCTTTCTAATTTTAA
ATTGCTCTGGTTTGTTATAGAACTATTGTGTGTTTTTTTAGTACTCTTCT
ATGATTTAATTAGCCTTATAAATGTGTATTCATAGACGGAAAAATAAGAA
AGCCTCAAATCGTCGTAAGTTCCTCATGGACTATCTTCATTTGGATGAAC
CTCGAAAGCACACTAAACTCAAACCCACTCCTCCACTCCCTATCAAAGAA
TCTCCTCTGCCGCCTACTCCAACYCCTMCYCCATCMCCMCCCCTACCACG
ACCCAAGGATGAAGAAGATGAAGAAACTACATCCACTTCCTCCTCCTCTC
TATTTTCTTATGGAAGTCCACATATACCAGTTGGAATCTATGGATTCTGC
CCCTTGTTTTTCTGCCCTCGGCACTCAACTCCAACAGAGTTTCCAAGCTT
ATTCCGACATATTTTTGAGGCTCATAACCCATTTCGCGCGCAAGTCAAAG
ATTTTAATTATTCTAGTCGCAATTATGGGTCCGTTGAGTTGGAGTTCTCC
CTTGGAGAGGCTATGCGTGTACGAGCGGATTCGGTTCTATGGTTTGGACC
CACGGAGTTTTTATTTGATGGCGTTCCTTTTTATGAAATTGTTTATCGGA
TTCCATCTCCAAGGAAGAAAGGGATTAAAAAGTTGGATGTAGAGGGAACG
GGGATGACGAATTGTTATATTTTTTGGCTCTATGTCGGGGCAGGKGTCAA
AACCGCTGAGAAATACTCTTATGTTATATCACTGTACAAGGATAAGGAAC
ATAGAAACGCGCAAAGACGTTCCGTTACTTCTTTTGAATCAAATCCTATT
GCAATGAATCATCGAGATGATCAGAGTAGAGGACCAGCGGGGTCTGCTTC
ATACTTTACATTCGAAGAGAATAAACTAAAAAATATTGCCTTTAGTGATG
GGACTCTCAAGTACTTTGTCAAGATCTTCAAAAACCGTCTTGGTAATAAT
AATTCCTACAGCTCATCGCAACTCAGTGACAACAATTACTATACGACAAA
GCAGAGACATAATTATTAG
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