EMLSAG00000001000, EMLSAG00000001000-683766 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001000
Unique NameEMLSAG00000001000-683766
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772984|gb|GAXK01181584.1| (TSA: Calanus finmarchicus comp129263_c10_seq7 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 9.882e-2
Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   28 LSDIRVEESK-FLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVK 80
            LS  R E ++  L+ E+ +V+  +K   FK     V ARG+++  TK+IID +K
Sbjct:   73 LSARRTETARNMLVDEVMQVQKKIKALMFKYIQEGVGARGVSVLATKTIIDSIK 234
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BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772986|gb|GAXK01181582.1| (TSA: Calanus finmarchicus comp129263_c10_seq5 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.057e-1
Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   28 LSDIRVEESK-FLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVK 80
            LS  R E ++  L+ E+ +V+  +K   FK     V ARG+++  TK+IID +K
Sbjct:   73 LSARRTETARNMLVDEVMQVQKKIKALMFKYIQEGVGARGVSVLATKTIIDSIK 234
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BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772988|gb|GAXK01181580.1| (TSA: Calanus finmarchicus comp129263_c10_seq3 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.336e-1
Identity = 34/124 (27.42%), Postives = 60/124 (48.39%), Query Frame = 0 
Query:   28 LSDIRVEESK-FLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNE-FQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNV 149
            LS  R E ++  L+ E+ +V+  +K   FK     V ARG+++  TK+IID +K        +++   S++ E F   P     D +  V +++E + E+V  + D   ++L    Q  Y   V
Sbjct:   73 LSARRTETARNMLVDEVMQVQKKIKALMFKYIQEGVGARGVSVLATKTIIDSIKSIWLSVNDDLESAKSSIQELFYLLP----LDTKEQVQAMVE-IAEVVQRIPDKTEELLQEATQEGYQQYV 429
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BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592772996|gb|GAXK01181572.1| (TSA: Calanus finmarchicus comp129263_c5_seq6 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.504e-1
Identity = 17/34 (50.00%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   46 VKDIVKYEAFKAFSSEVAARGITLERTKSIIDVV 79
            VKD  K   FK     V  RG++L  TKSIID V
Sbjct:  258 VKDKTKILMFKYIEKGVGERGVSLRATKSIIDSV 359
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BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592957096|gb|GAXK01001460.1| (TSA: Calanus finmarchicus comp3075746_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.520e+0
Identity = 15/40 (37.50%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:   89 EIDEIISNLNEFQRNPDSFDADA----ENYVNSVIEMLPE 124
            +++  ISNLNEFQRN  + +A+     +N+ +S+ +M+ E
Sbjct:  370 KMNSWISNLNEFQRNSKNENAEMLYILDNFNSSITKMIEE 489
[Close]
BLAST of EMLSAG00000001000 vs. C. finmarchicus
Match: gi|592851774|gb|GAXK01105770.1| (TSA: Calanus finmarchicus comp185921_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 8.244e+0
Identity = 18/74 (24.32%), Postives = 35/74 (47.30%), Query Frame = 0 
Query:   58 FSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVID 131
            F S     G +L  T ++I  ++    ++ K+   ++  +  FQ NPD        Y+N+++   P   PF++D
Sbjct: 4719 FESLFGVWGGSLVMTITLIKCLRSVWSDSTKQYFTLLLCILLFQYNPDG-------YLNNLVPSKPRTSPFLLD 4919
[Close]
BLAST of EMLSAG00000001000 vs. L. salmonis peptides
Match: EMLSAP00000001000 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:264991:268048:-1 gene:EMLSAG00000001000 transcript:EMLSAT00000001000 description:"maker-LSalAtl2s116-augustus-gene-2.13")

HSP 1 Score: 298.13 bits (762), Expect = 2.299e-104
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 
Query:    1 MLSYWISFAIVLITALQSLVINCQPIKLSDIRVEESKFLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNVV 150
            MLSYWISFAIVLITALQSLVINCQPIKLSDIRVEESKFLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNVV
Sbjct:    1 MLSYWISFAIVLITALQSLVINCQPIKLSDIRVEESKFLIQELEEVKDIVKYEAFKAFSSEVAARGITLERTKSIIDVVKFFMEETIKEIDEIISNLNEFQRNPDSFDADAENYVNSVIEMLPEIVPFVIDGYRDILLRLKQSEYTSNVV 150
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001000 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001000 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592772984|gb|GAXK01181584.1|9.882e-237.04TSA: Calanus finmarchicus comp129263_c10_seq7 tran... [more]
gi|592772986|gb|GAXK01181582.1|1.057e-137.04TSA: Calanus finmarchicus comp129263_c10_seq5 tran... [more]
gi|592772988|gb|GAXK01181580.1|1.336e-127.42TSA: Calanus finmarchicus comp129263_c10_seq3 tran... [more]
gi|592772996|gb|GAXK01181572.1|6.504e-150.00TSA: Calanus finmarchicus comp129263_c5_seq6 trans... [more]
gi|592957096|gb|GAXK01001460.1|3.520e+037.50TSA: Calanus finmarchicus comp3075746_c0_seq1 tran... [more]
gi|592851774|gb|GAXK01105770.1|8.244e+024.32TSA: Calanus finmarchicus comp185921_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001000 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010002.299e-104100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:26499... [more]
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BLAST of EMLSAG00000001000 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001000 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001000 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001000 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s116supercontigLSalAtl2s116:264991..268048 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s116-augustus-gene-2.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001000 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001000EMLSAT00000001000-696847Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s116:264991..268048-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001000-683766 ID=EMLSAG00000001000-683766|Name=EMLSAG00000001000|organism=Lepeophtheirus salmonis|type=gene|length=3058bp|location=Sequence derived from alignment at LSalAtl2s116:264991..268048- (Lepeophtheirus salmonis)
ATGGTAAGTCAAGCCTAGTCTGCCTACACAATACCATTCAATATGAAGGA
ACTACTTTCTCTCGCTTTGAAAGTGGATCTTTGGAGCTATTCACGCAAAA
ATAGAAAATCCCATTATTAGAAAATAATTCGTCATGTGATTCCTTCGAAA
CAAGGATATGAATAATGCAGGAGCTAATTTAATTCCTTGCTAATTTATAT
ATTTGTCATTCCGTTTAAAAAGTGAAATTACAAGTAAAATTAATTAATTG
TCAATAGATTACTATTTTTTAACAAATATAATTGTGCCCAAATCTCAACG
GAACAAAAGAAATGTACATCATTCAACAAAACCCTTTAGATTTGAACAAT
TGAACAGAATATGGACTTGCATTTATATAAATGTATCTTCATTTTAATTA
GCCAAAGAGAGGGATAATCAAATCCTTGATTATTATGAATCTTTCATATT
ATTTTTCATGTATACAAATATGTAGTCTCACTCGTCATTCAATTCCTCAT
TTGTTGAAAAGGATCTTTAAATTTACAGTTATCAAACGATATATGTAATT
AATATCGAATACGTTTTATATAACGATGGATTCATTATCATCCAATTTCA
AAAGGACTATATAGAACTACATATTTTCTGATGAATCCCTCCTTTTTAGA
CCTATCCAATATCCCTAGTAAATATCTGATCATTGCCTACATATTAATGT
AACTTTTTTTTTTTTTGAAGTTGTCTTATTGGATCTCGTTTGCAATTGTG
TTGATCACAGCCCTTCAGTCCCTTGTCATCAATTGTCAACCGATCAAATT
AAGCGACATTCGAGTAGAAGAATCCAAGTTCCTCATACAAGAGTTGGAAG
AAGTAAAAGACATCGTTAAATACGAGGCCTTTAAAGCATTTTCATCCGAA
GTCGCCGCGCGAGGCATCACGTTGGAAAGAACTAAGAGCATCATTGACGT
TGTTAAAGTAAGATCACATCAGTGCAAAAGTTTATTTATTAACATAATAT
TTTGAAGAAGAAAAAAATATATAACTGCAATTCACTGATGGATGGGAATT
AGTTACAATATACACGTAGATATCACACAAAGACAAAATTATTACTTATT
AAGTTTTAAAAATGTCAACGATGTTATTGAAATTCCTATCATATGTTGTA
TAGTTAGGTAGCATTCTTAATGCTAGTCTAGCCAAATTCTGTTCTCTCAG
CTAGTTTGAGAGGGGGACGAATAAACAAGCATAAAAAATAACAAAACATT
GATTTAATCCAATGTTTTAATTTTGTATACATTGTGAAACAAAAATCATC
TTCTTATTTTTCAACAGAACACATGTACTGCTTGTATTTTTTTCAAATAT
CACACTTCCTTATAAAGACATACAAGTATATATTTATAAGATTTTTTTTT
TAGTATGTATCCATCACTTAAAATCATTATCGTTCAATTAATCATTTTGC
AAAAATAAATAAAAAATAATGAGGTGGACATCATTAATGGAGCAAAACCC
AAGTTGTACATATATGTAGTATACCTGTACTAAGTTGACCTCTTTTACTA
AATTTCCTAGTTACTAACGATTATAAATTTGAAAATCGTATATGGCCGTT
TAGTGCAATGACACACTTAAAAAATGTTGCCGTGAGACGAAGTTTTACTG
TACTTGTATATGAGTACAAAGCAAATTGTACAAGTTATAATCCCAATACG
AGATATCTAATGTTAAATAAGTAGGTTTGAGTACTATTAATAAATAATAT
ATCTTTAATTTTTGACACTTTGTAATGAAAATTACGAATTGAGAAGTATT
TGGGGAATTTAGTGAGTTACAATGTTATATATAAGTCGCAAATGCAGTAT
AAATAGTCAATTTTAATAGATCAAAATAATTGAATTTATTATTAGAAAAT
ATTAAATTGGTGCATGATGTAATAAAATAAAGCGTAGCGAGACAAAGTAA
TTGTAGCTTGTACAATCCACTTATACAAGTTAGTTCTTGTATAATTAGAG
TTGTAAATCGTAAAAAAACCTGACAGTTGAATTTTTTTTTTTTGAGAGGA
GAGTGTCTTAGCTATCATAACGTTTCATTAAATTAGTTCAAGCATCTATG
AGATGAAGGAAGTAAACACAAGTCCCACTCCGTATCAAGAAAGGATATAG
GCTGKAATTACTCAATTCTACTACAAGTCCAACAAGGGCTTATAACTCAT
GTGTGTTACGCTTCGTCATTCATGAGTACACAAGAGTAGTTAAACGTTTT
CACACGCTAAAAAAACCCTCGTGATTTACAACCCTGGACCTTAACTAACA
GATGAATAACCAATTCGGAATCCCTTTTGTGAGATATTTAAGACATTTAT
AAATATGTTCATGTAATAACATTCTCTTGACATTTGAACGGATTTTCGTC
ATATAAATAAACAACTGTGTTTCATTATTATATATGAATATTATTTTTAT
GGAACATAAAGTCATTTTTTTACAATTTTTTAACAGTATTATTATGTTGT
ATATACATATATATCATCCATGAATTGGCTCCTGCTTGAACCAAATATTT
TAAGGGGAAAATGGTTGCTTGAGGGCTTTAGGCTGTAAGAATATGTACAT
ATTACATAATTCGTTGTTTTGTTTTTTCATTTCAAGTCACAATAAGTAAA
ACCATTGCTTTGCGAATTTATAAGTAGAAATAATGAGAAATTATGTAGAG
TCTATTAATTTACCTGTACCCACAGGTGTTTCCTGCAAAAAAATTATGTA
TATATATTTATACCTACATACATGAATAATAGAAGATAGGAGTGCCATCA
TAATATATAATCTACTTATATACTTTTCTTAATATTTTTTTACAGTTTTT
TATGGAGGAAACGATTAAAGAAATTGATGAAATCATTTCTAATTTAAATG
AGTTTCAACGTAATCCAGATAGTTTTGACGCGGATGCAGAGAATTATGTC
AACTCCGTCATTGAAATGCTACCAGAGATTGTTCCTTTTGTCATTGATGG
TTATCGGGACATCCTTCTCAGATTGAAACAAAGTGAATACACGAGTAATG
TCGTGTAA
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