EMLSAG00000001041, EMLSAG00000001041-683807 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001041
Unique NameEMLSAG00000001041-683807
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592800874|gb|GAXK01153694.1| (TSA: Calanus finmarchicus comp1086407_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 9.903e-3
Identity = 21/88 (23.86%), Postives = 35/88 (39.77%), Query Frame = 0
Query:    7 YSWNMFYMVLFVFFPLDLVAS-DCVCGQGAAPDFMS---SIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCF 90
            Y     ++V F+  P  + +  +C+CG+  +    S    I          +PW  L+    N  +PL  C G L+N  +V     C 
Sbjct:   46 YCEEEMFLVFFLLVPSHVYSEGECLCGESPSSVSQSVTLKIVGGQEAEINEFPWQCLLDIKGNSTSPLQQCGGTLINDRFVLTAAHCI 309          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592774721|gb|GAXK01179847.1| (TSA: Calanus finmarchicus comp769489_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 1.822e-2
Identity = 24/100 (24.00%), Postives = 40/100 (40.00%), Query Frame = 0
Query:   27 SDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSK 126
            +DC CG       +    D   G    YPW++ +       + +GMC G+++N  ++     C           P  N+    +V    HD T  +LDS+
Sbjct:  580 ADCRCGMKKQNTRIVGGQDVDAG---EYPWMAFIAFKNQTGDIVGMCGGSIINSKWIITARHCLFKNYISGPMHPTSNV----EVFLGLHDETAEQLDSR 858          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592862158|gb|GAXK01095404.1| (TSA: Calanus finmarchicus comp1887993_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 3.008e-2
Identity = 26/83 (31.33%), Postives = 33/83 (39.76%), Query Frame = 0
Query:   12 FYMVLFVFFPLDLVASDCVCG--QGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNP---LGMCSGALVNQHYVALDESC 89
            F +VL +   L L ASDC CG  Q     F   +          +PW +L+    N + P      C G LVN  YV     C
Sbjct: 1006 FTLVLLIVQSLGLKASDCRCGETQNKKKYFDLKVDRGEEAGINEFPWAALLK-IRNYSRPGVQYHRCGGTLVNDRYVLTAAHC 1251          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592797513|gb|GAXK01157055.1| (TSA: Calanus finmarchicus comp1679533_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 1.434e-1
Identity = 30/104 (28.85%), Postives = 38/104 (36.54%), Query Frame = 0
Query:   31 CGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTT 130
            C  G  P     I  K TG        +PW + VT    KN     C G L+N  YV     C           P  N+ +  KV   +HD T  E + K+  T
Sbjct: 1013 CQCGIKPSAKVRIKPKITGGEEADKNEFPWAAFVT--ITKNGKHTRCGGTLINDRYVLTAGHC----------VPTSNLEI--KVTLGEHDITQRENELKLTAT 1282          

HSP 2 Score: 31.187 bits (69), Expect = 1.185e+0
Identity = 25/79 (31.65%), Postives = 32/79 (40.51%), Query Frame = 0
Query:   29 CVCG----QGAAPDFMSS-IADKPTGLTTVYPWLSLV----TGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98
            C CG     GAAP   S  +A         +PW++L+    TG   K      C G L+N  YV     C  Y   +EV
Sbjct:  116 CECGVRKSGGAAPCSRSGRVAGGDEANVGEFPWMALLVIRSTGKNTKR-----CGGTLINSRYVLTTAHCALYSHDIEV 337          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592814039|gb|GAXK01140529.1| (TSA: Calanus finmarchicus comp476341_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.719e-1
Identity = 21/78 (26.92%), Postives = 34/78 (43.59%), Query Frame = 0
Query:   25 VASDCVCGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98
            ++SDCVCG+      MS +  K TG        +PW +L+            C G+L+N  +V     C  Y  ++ +
Sbjct:  107 LSSDCVCGERRP---MSKLDLKITGGQDAGVNEFPWAALLL--ITDGGKPRRCGGSLINDRFVLTAAHCLPYASQLNI 325          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592862145|gb|GAXK01095417.1| (TSA: Calanus finmarchicus comp200984_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 4.362e-1
Identity = 20/87 (22.99%), Postives = 30/87 (34.48%), Query Frame = 0
Query:   26 ASDCVCGQGAAPD--FMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGK 110
            + DC CG     D  F   I+         +PW  L+    N  +    C G L+N  +V     C      ++V+      N   K
Sbjct:  125 SGDCNCGVRKYEDSPFAVRISGGEEAEINEFPWAVLLRITQNGTSRTSRCGGTLINDRFVLTAAHCVPRSSGIDVEVILGEHNTRSK 385          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592814040|gb|GAXK01140528.1| (TSA: Calanus finmarchicus comp476341_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 4.954e-1
Identity = 26/95 (27.37%), Postives = 44/95 (46.32%), Query Frame = 0
Query:    8 SWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEV 98
            +W + ++V  V   ++L +SDCVCG+   P  MS +  K TG        +PW +L+            C G+L+N  +V     C  Y  ++ +
Sbjct:   62 AWVLVFLV-SVTSSINL-SSDCVCGE-RRP--MSKLDLKITGGQDAGVNEFPWAALLL--ITDGGKPRRCGGSLINDRFVLTAAHCLPYASQLNI 325          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592801778|gb|GAXK01152790.1| (TSA: Calanus finmarchicus comp403592_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.874e-1
Identity = 19/68 (27.94%), Postives = 26/68 (38.24%), Query Frame = 0
Query:   27 SDCVCGQGAAPDFMSSIADKPTGLTTV----YPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCF 90
            S C CGQ     F      +  G        +PW +L++       P+  C G+LVN  YV     C 
Sbjct:  139 STCRCGQRKYSTFGQFFGTRVVGGKETEVNEFPWAALLSIRSKGKKPV-RCGGSLVNDRYVVTAAHCI 339          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592756414|gb|GAXK01197999.1| (TSA: Calanus finmarchicus comp1396581_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 7.208e-1
Identity = 19/86 (22.09%), Postives = 33/86 (38.37%), Query Frame = 0
Query:   10 NMFYMVLFVFFPLDLVA----SDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFD 91
             M  + + + F L +      +DC CG    P F+  +          +PW +L+         +  C G+L+N  +V     C D
Sbjct:  146 KMMLLSIMIHFVLQVSVQGNHADCKCGGRNEPPFVERVIGGVEAGVGEFPWAALLE-IKEYGIVVDRCGGSLINDRFVLTAAHCVD 400          
BLAST of EMLSAG00000001041 vs. C. finmarchicus
Match: gi|592913075|gb|GAXK01045300.1| (TSA: Calanus finmarchicus comp3022210_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.421e+0
Identity = 18/63 (28.57%), Postives = 24/63 (38.10%), Query Frame = 0
Query:   29 CVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFD 91
            C CG       +     KP      YPW +LVT         GMC G+L+   ++     C D
Sbjct:  747 CKCGIKKNSRIIGGHETKPQN----YPWTALVTSSIYS----GMCGGSLIASEWILTAAHCLD 911          
BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Match: EMLSAP00000001041 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:524:-1 gene:EMLSAG00000001041 transcript:EMLSAT00000001041 description:"maker-LSalAtl2s1172-augustus-gene-0.29")

HSP 1 Score: 274.633 bits (701), Expect = 9.577e-96
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query:    1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131
            MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS
Sbjct:    1 MLIIQPYSWNMFYMVLFVFFPLDLVASDCVCGQGAAPDFMSSIADKPTGLTTVYPWLSLVTGPFNKNNPLGMCSGALVNQHYVALDESCFDYYERVEVQFPFENINVSGKVIKTKHDYTLIELDSKINTTS 131          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001041 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001041 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592800874|gb|GAXK01153694.1|9.903e-323.86TSA: Calanus finmarchicus comp1086407_c0_seq1 tran... [more]
gi|592774721|gb|GAXK01179847.1|1.822e-224.00TSA: Calanus finmarchicus comp769489_c0_seq1 trans... [more]
gi|592862158|gb|GAXK01095404.1|3.008e-231.33TSA: Calanus finmarchicus comp1887993_c0_seq1 tran... [more]
gi|592797513|gb|GAXK01157055.1|1.434e-128.85TSA: Calanus finmarchicus comp1679533_c0_seq1 tran... [more]
gi|592814039|gb|GAXK01140529.1|2.719e-126.92TSA: Calanus finmarchicus comp476341_c1_seq2 trans... [more]
gi|592862145|gb|GAXK01095417.1|4.362e-122.99TSA: Calanus finmarchicus comp200984_c3_seq1 trans... [more]
gi|592814040|gb|GAXK01140528.1|4.954e-127.37TSA: Calanus finmarchicus comp476341_c1_seq1 trans... [more]
gi|592801778|gb|GAXK01152790.1|5.874e-127.94TSA: Calanus finmarchicus comp403592_c0_seq1 trans... [more]
gi|592756414|gb|GAXK01197999.1|7.208e-122.09TSA: Calanus finmarchicus comp1396581_c0_seq1 tran... [more]
gi|592913075|gb|GAXK01045300.1|1.421e+028.57TSA: Calanus finmarchicus comp3022210_c0_seq1 tran... [more]

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BLAST of EMLSAG00000001041 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010419.577e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:1:52... [more]
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BLAST of EMLSAG00000001041 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001041 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001041 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001041 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1172supercontigLSalAtl2s1172:1..524 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1172-augustus-gene-0.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001041 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001041EMLSAT00000001041-696888Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1172:1..524-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001041-683807 ID=EMLSAG00000001041-683807|Name=EMLSAG00000001041|organism=Lepeophtheirus salmonis|type=gene|length=524bp|location=Sequence derived from alignment at LSalAtl2s1172:1..524- (Lepeophtheirus salmonis)
ATGTTGATCATACAACCTTATTCATGGAACATGTTTTACATGGTTCTCTT TGTATTCTTTCCTCTTGATTTAGTTGCGTCAGATTGTGGTAAGTCGAAAC ATTACTCATTTTCCAGATTTTCTTATGAGTCCAAATTCTAAACGTGAACA TATTTTTATTTAAAAGTCTGTGGTCAAGGAGCAGCCCCGGACTTCATGTC ATCAATAGCTGACAAGCCAACTGGATTAACTACTGTGTATCCTTGGTTGT CCTTGGTTACTGGTCCATTTAATAAGAATAATCCTCTTGGTATGTGCTCA GGAGCTCTGGTGAATCAACATTATGTGGCACTGGATGAGTCCTGTTTCGA CTACTATGAAAGAGTTGAAGTAAGAAATATGATTGATATCAACCTTCAAA AATCTTTTTTATATTCCTCCAGGTTCAATTTCCATTTGAAAATATAAATG TGAGTGGAAAAGTAATAAAGACGAAGCATGATTATACCTTAATTGAATTA GATTCAAAAATAAATACAACATCA
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