EMLSAG00000001083, EMLSAG00000001083-683849 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592837220|gb|GAXK01120324.1| (TSA: Calanus finmarchicus comp986163_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 8.446e-2 Identity = 34/128 (26.56%), Postives = 58/128 (45.31%), Query Frame = 0 Query: 66 SDWSVCYFSLPNGS-VCRLL----HFDYDIPGCSEVSRDEGGSPTCRYEVNRPT---DGNWTNSLFVFNETSGDFDVKSV----SLRALVKSRLSTNKKRIKLRLDQS--TEVQCTSERGYPAPKISW 179 S W C + P G VC L D + G ++ + +G S +C ++ PT G WT ++ S D ++++ +L +V+ +S N L L + ++ C E+G+P P ISW Sbjct: 442 SPWFFCVWEGPRGDRVCSLRSNIGKGDGSMCGGNDRMKIKGNSSSCSLVIDTPTLSDHGVWTCAV------SDDRSLETIKDYRNLDIVVEGEVSLNPSHAILELGEGDMADLLCKVEKGFPKPDISW 807
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592919348|gb|GAXK01039027.1| (TSA: Calanus finmarchicus comp1179965_c0_seq2 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.231e-1 Identity = 15/46 (32.61%), Postives = 25/46 (54.35%), Query Frame = 0 Query: 166 CTSERGYPAPKISW-------KYGYTLLVPHTPIVNCDDFSCSTES 204 CT +GYPAP I+W G++LL+P + + D++C + Sbjct: 527 CTVLQGYPAPAIAWYKDGHSLSTGHSLLIPTAQLQHSGDYTCQAHN 664
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592919349|gb|GAXK01039026.1| (TSA: Calanus finmarchicus comp1179965_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 1.951e-1 Identity = 15/46 (32.61%), Postives = 25/46 (54.35%), Query Frame = 0 Query: 166 CTSERGYPAPKISW-------KYGYTLLVPHTPIVNCDDFSCSTES 204 CT +GYPAP I+W G++LL+P + + D++C + Sbjct: 527 CTVLQGYPAPAIAWYKDGHSLSTGHSLLIPTAQLQHSGDYTCQAHN 664
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592750188|gb|GAXK01204225.1| (TSA: Calanus finmarchicus comp410769_c0_seq2 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 2.274e-1 Identity = 34/130 (26.15%), Postives = 55/130 (42.31%), Query Frame = 0 Query: 60 LASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPG---CSEVSRDE--GGSPTCRYEVNRPT---DGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLST--NKKRIKLRLDQSTEVQCTSERGYPAPKISW 179 L+ + TS W C + P+G L G C E R E G S C ++ P G WT + V +++S + + L +V+ + + I++ + E+ C E YP P+ISW Sbjct: 591 LSCTSTSPWFFCVWEGPDGDRACALREKMGEQGNSLCGEQGRLEVRGNSSICTLVIHNPQLSDHGEWTCA--VSDDSSLETVKDYIQLDMVVEGEMVLLPDTTMIEMVEGEKVELVCMVEDVYPTPEISW 974
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592750189|gb|GAXK01204224.1| (TSA: Calanus finmarchicus comp410769_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 2.877e-1 Identity = 34/130 (26.15%), Postives = 55/130 (42.31%), Query Frame = 0 Query: 60 LASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPG---CSEVSRDE--GGSPTCRYEVNRPT---DGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLST--NKKRIKLRLDQSTEVQCTSERGYPAPKISW 179 L+ + TS W C + P+G L G C E R E G S C ++ P G WT + V +++S + + L +V+ + + I++ + E+ C E YP P+ISW Sbjct: 609 LSCTSTSPWFFCVWEGPDGDRACALREKMGEQGNSLCGEQGRLEVRGNSSICTLVIHNPQLSDHGEWTCA--VSDDSSLETVKDYIQLDMVVEGEMVLLPDTTMIEMVEGEKVELVCMVEDVYPTPEISW 992
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592922866|gb|GAXK01035523.1| (TSA: Calanus finmarchicus comp616097_c2_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 4.719e-1 Identity = 41/166 (24.70%), Postives = 67/166 (40.36%), Query Frame = 0 Query: 30 LRIVSPLSSKPLDLIDGQEIVYS---RRRTFHLLASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPGCSEVSRDEGGSPTCRYEVNRPTDGNWTNSLFVFNETSGDF--DVKSVSLRALVKSRL---------STNKKRI-KLRLDQSTEVQCTSERGYPAPKISWK 180 ++I+S L S + +G + S RR F L +SP + VC ++ H D I +G S C VN T +W + + +F D + + + +S + STN + +L + EV CT++ GYP P SW+ Sbjct: 533 IKILSSLPSSGSVVREGGTVSLSCETDRRWFLCLWTSPL-EHKVCSIQESENGASQVCHGDPRII-------VQGDSTNCGITVNNVTSDDW-GAWMCLVQDGEEFKTDRREIDMEVGRQSDIEMEYEMGANSTNSDMVLRLTEGEEAEVTCTADHGYPTPSFSWE 1003
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592900510|gb|GAXK01057865.1| (TSA: Calanus finmarchicus comp517960_c2_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 9.223e-1 Identity = 17/62 (27.42%), Postives = 38/62 (61.29%), Query Frame = 0 Query: 127 ETSGDFDVKSVSLRALVKSRLSTNKK--RIKLRLDQSTEVQCTSERGYPAPKISWKYGYTLL 186 E G+ +++ L+ LV +++T+ + + +R D S ++ C + G+P+P+ISW+ + +L Sbjct: 1312 ENEGEPILQTNQLQILVPPKIATSHRGQNLTVRKDSSLKLSCNAS-GFPSPRISWQRQHQML 1494
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592805701|gb|GAXK01148867.1| (TSA: Calanus finmarchicus comp840520_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.079e+0 Identity = 27/84 (32.14%), Postives = 39/84 (46.43%), Query Frame = 0 Query: 96 VSRDEGGSPTCRYEVNRPTDGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLSTNKKRIKLRLDQSTEVQCTSERGYPAPKISW 179 V+RD+ G C+ ++ P F F E+S V + R V S L KK L D+ + + CTS YP+ K+SW Sbjct: 431 VTRDQTGKFKCQVTMDAPP--------FQFIESSAHLTVMVLPERHPVISGL---KKTTYLPGDKLS-INCTSSPSYPSAKLSW 646
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592846080|gb|GAXK01111464.1| (TSA: Calanus finmarchicus comp53253_c2_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.843e+0 Identity = 20/87 (22.99%), Postives = 37/87 (42.53%), Query Frame = 0 Query: 94 SEVSRDEGGSPTCRYEVNRPTDGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLSTNKKRIKLRLDQSTEVQCTSERGYPAPKISWK 180 ++ +GG C+ RP D V SV +R + K ++ KK + + + ++C + G+P P+ISW+ Sbjct: 1176 TQAESSDGGDYMCQISAYRPKD-----------------IVHSVMVRTMPKVQV--EKKVVTVTQGEGVSLKCNVKGGHPVPEISWR 1379
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Match: gi|592797967|gb|GAXK01156601.1| (TSA: Calanus finmarchicus comp2207599_c0_seq2 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 3.558e+0 Identity = 34/156 (21.79%), Postives = 64/156 (41.03%), Query Frame = 0 Query: 38 SKPLDLIDGQEIVYSRRRTFHLLASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPGCSEVSRDE--GGSPTC--RYEVNRPTDGNWTNSLFVFNETSGDFDVKS-VSLRALVKSRLSTNKKR---------IKLRLDQSTEVQCTSERGYPAPKISW 179 ++P+ +++G+ + S R W C + P + ++ CS+ +R + GG C +EV R G W + + N+ VK+ VSL V++ + N R ++L +S +++C + GYP W Sbjct: 626 TEPVLVVEGRTVRMSCR---------TEKQWFFCLWYSPRQDKQCAIQYNQPERICSKSNRTKLIGGQDRCDVEFEVAREDHGKW---MCLVNDNEEFNAVKNFVSLHIGVEAGMGINVHRGDLMSREGILRLVEGESVDIKCYANNGYPRANFIW 1057
BLAST of EMLSAG00000001083 vs. L. salmonis peptides
Match: EMLSAP00000001083 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:741294:756081:1 gene:EMLSAG00000001083 transcript:EMLSAT00000001083 description:"maker-LSalAtl2s117-augustus-gene-7.27") HSP 1 Score: 861.677 bits (2225), Expect = 0.000e+0 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0 Query: 1 MSQTQALILIIILSLQIRMSTLSAEFASQLRIVSPLSSKPLDLIDGQEIVYSRRRTFHLLASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPGCSEVSRDEGGSPTCRYEVNRPTDGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLSTNKKRIKLRLDQSTEVQCTSERGYPAPKISWKYGYTLLVPHTPIVNCDDFSCSTESRLNFTGRRGTQEISVTVLPAPKGVLKSGLFITCLFFGILIFLFLIFLLLYCLFIFFQRHRRRKKDNTSSPPLEVIYEEAVKPFTIYNPPSVTSSSAYFSSGSDDVVFLSSSDGGEMLTQKLKGLSDSELCNDDELFEYEWEGWGTASHSSSLSDIISNSSTQNDSDPEDLDYNHVDNNTTPDFCRLGPQLQDLAQIYDNDKPARPSILYEVPNESWV 421 MSQTQALILIIILSLQIRMSTLSAEFASQLRIVSPLSSKPLDLIDGQEIVYSRRRTFHLLASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPGCSEVSRDEGGSPTCRYEVNRPTDGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLSTNKKRIKLRLDQSTEVQCTSERGYPAPKISWKYGYTLLVPHTPIVNCDDFSCSTESRLNFTGRRGTQEISVTVLPAPKGVLKSGLFITCLFFGILIFLFLIFLLLYCLFIFFQRHRRRKKDNTSSPPLEVIYEEAVKPFTIYNPPSVTSSSAYFSSGSDDVVFLSSSDGGEMLTQKLKGLSDSELCNDDELFEYEWEGWGTASHSSSLSDIISNSSTQNDSDPEDLDYNHVDNNTTPDFCRLGPQLQDLAQIYDNDKPARPSILYEVPNESWV Sbjct: 1 MSQTQALILIIILSLQIRMSTLSAEFASQLRIVSPLSSKPLDLIDGQEIVYSRRRTFHLLASSPTSDWSVCYFSLPNGSVCRLLHFDYDIPGCSEVSRDEGGSPTCRYEVNRPTDGNWTNSLFVFNETSGDFDVKSVSLRALVKSRLSTNKKRIKLRLDQSTEVQCTSERGYPAPKISWKYGYTLLVPHTPIVNCDDFSCSTESRLNFTGRRGTQEISVTVLPAPKGVLKSGLFITCLFFGILIFLFLIFLLLYCLFIFFQRHRRRKKDNTSSPPLEVIYEEAVKPFTIYNPPSVTSSSAYFSSGSDDVVFLSSSDGGEMLTQKLKGLSDSELCNDDELFEYEWEGWGTASHSSSLSDIISNSSTQNDSDPEDLDYNHVDNNTTPDFCRLGPQLQDLAQIYDNDKPARPSILYEVPNESWV 421 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001083 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001083 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000001083 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001083 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001083 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001083 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001083 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s117:741294..756081+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001083-683849 ID=EMLSAG00000001083-683849|Name=EMLSAG00000001083|organism=Lepeophtheirus salmonis|type=gene|length=14788bp|location=Sequence derived from alignment at LSalAtl2s117:741294..756081+ (Lepeophtheirus salmonis)back to top Add to Basket
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