EMLSAG00000001091, EMLSAG00000001091-683857 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001091
Unique NameEMLSAG00000001091-683857
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001091 vs. C. finmarchicus
Match: gi|592957464|gb|GAXK01001092.1| (TSA: Calanus finmarchicus comp1763068_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.186e+0
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 0 
Query:    4 FVFKGIGGGVTLYIESGFTAAHVSGSLDYIC 34
            + ++ IG   +LY+ SG     VSGS DY C
Sbjct:   48 YAWQSIGSMDSLYVNSGLLL*VVSGSRDYCC 140
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BLAST of EMLSAG00000001091 vs. L. salmonis peptides
Match: EMLSAP00000001091 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:787916:788308:-1 gene:EMLSAG00000001091 transcript:EMLSAT00000001091 description:"maker-LSalAtl2s117-snap-gene-8.15")

HSP 1 Score: 121.324 bits (303), Expect = 1.257e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MIAFVFKGIGGGVTLYIESGFTAAHVSGSLDYICGQLLMVNIFLLRPFVMISYYSSWYIM 60
            MIAFVFKGIGGGVTLYIESGFTAAHVSGSLDYICGQLLMVNIFLLRPFVMISYYSSWYIM
Sbjct:    1 MIAFVFKGIGGGVTLYIESGFTAAHVSGSLDYICGQLLMVNIFLLRPFVMISYYSSWYIM 60
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001091 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001091 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592957464|gb|GAXK01001092.1|2.186e+041.94TSA: Calanus finmarchicus comp1763068_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001091 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010911.257e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:78791... [more]
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BLAST of EMLSAG00000001091 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001091 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001091 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001091 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:787916..788308 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s117-snap-gene-8.15
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001091 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001091EMLSAT00000001091-696938Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:787916..788308-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001091-683857 ID=EMLSAG00000001091-683857|Name=EMLSAG00000001091|organism=Lepeophtheirus salmonis|type=gene|length=393bp|location=Sequence derived from alignment at LSalAtl2s117:787916..788308- (Lepeophtheirus salmonis)
ATGATTGCCTTTGTTTTTAAGGGAATTGGTGGAGGAGTTACGTTATATAT
TGAGTCTGGTTGTTGAATCCAGTCTCCCTCAATAGTAAGAAGTTGTTAAT
CTTTCTTTAAAATGGAATCTCAACACTAAGCTGAGAATCAGAATGATGAA
GTTTGTTGTTATTTTATTAATATGTGAGCAGCTTCTTAGTTCTTTTATTC
ATAGATTATATTTCTAGCTATACGCTACGCTTTAGAGTCTCCTCACTAAT
CTTTTTTCTTTATCTTAGGGTTCACAGCTGCCCACGTGAGCGGCTCATTA
GATTATATTTGTGGACAACTTTTAATGGTCAACATATTCCTTCTACGTCC
ATTTGTTATGATATCTTACTATAGCTCCTGGTATATTATGTAA
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