EMLSAG00000001097, EMLSAG00000001097-683863 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001097
Unique NameEMLSAG00000001097-683863
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001097 vs. GO
Match: - (symbol:mbd3a "methyl-CpG binding domain protein 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001739 InterPro:IPR016177 Pfam:PF01429 PROSITE:PS50982 SMART:SM00391 ZFIN:ZDB-GENE-030131-9077 GO:GO:0005634 GO:GO:0003677 SUPFAM:SSF54171 Gene3D:3.30.890.10 HOVERGEN:HBG052417 OrthoDB:EOG7QNVMV TreeFam:TF325032 InterPro:IPR025884 Pfam:PF14048 GeneTree:ENSGT00410000025376 KO:K11591 EMBL:CABZ01061879 EMBL:CU855938 EMBL:AY398379 RefSeq:NP_997934.1 UniGene:Dr.104630 STRING:7955.ENSDARP00000082941 Ensembl:ENSDART00000088508 Ensembl:ENSDART00000149508 GeneID:337133 KEGG:dre:337133 CTD:337133 OMA:SALPNGW NextBio:20812076 Uniprot:Q6TGX7)

HSP 1 Score: 43.1282 bits (100), Expect = 5.268e-5
Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 0 
Query:    8 RRDEVSNLPRRWCREEISR-----GNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKI 68
            +R E S LP  W  EE++R       ++ VYY +PTG + R++ +L + L +  DL++ D  + K+
Sbjct:    4 KRWECSALPNGWKMEEVTRKSGLSAGKSDVYYFSPTGKKFRSKPQLVRYLGKSMDLSSFDFRTGKM 69
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BLAST of EMLSAG00000001097 vs. C. finmarchicus
Match: gi|592850921|gb|GAXK01106623.1| (TSA: Calanus finmarchicus comp118638_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 55.0694 bits (131), Expect = 1.666e-9
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0 
Query:    8 RRDEVSNLPRRWCREEISR-----GNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIHSXI 72
            RR E   LP+ W REE+ R       +  VYY  P G +VR++ EL KVL + +DL+  D+ S  +HS +
Sbjct:  683 RRSECGALPKGWIREEVMRKGGLSAGKFDVYYYPPEGKKVRSKPELIKVLGDTFDLSCFDYSSGTMHSTL 892
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BLAST of EMLSAG00000001097 vs. C. finmarchicus
Match: gi|592803746|gb|GAXK01150822.1| (TSA: Calanus finmarchicus comp154982_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.094e-1
Identity = 18/43 (41.86%), Postives = 21/43 (48.84%), Query Frame = 0 
Query:   11 EVSNLPRRWCREEISR-----GNRTGVYYIAPTGVRVRNRNEL 48
            E   LP  W R+   R       R  V+ I PTG R R+RNEL
Sbjct: 3829 EDETLPSGWHRKVSQRKSGASAGRYEVFIIGPTGKRFRSRNEL 3957
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BLAST of EMLSAG00000001097 vs. C. finmarchicus
Match: gi|592929682|gb|GAXK01028863.1| (TSA: Calanus finmarchicus comp626038_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.510e+0
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 0 
Query:   27 GNRTGVYYIAPTGVRVRNRNELGKVL 52
            G R  V+Y+AP G R+RN +E+ + L
Sbjct:  679 GGRRKVFYLAPCGRRLRNLDEVHRYL 756
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BLAST of EMLSAG00000001097 vs. C. finmarchicus
Match: gi|592917938|gb|GAXK01040437.1| (TSA: Calanus finmarchicus comp146613_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.394e+0
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:   19 WCREEISRGNRTGVYYIAPTGVRVRNR 45
            WC E   RGN  G    +PTGVRV+ R
Sbjct: 2197 WCFETGWRGNTKGKTRKSPTGVRVQWR 2277
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BLAST of EMLSAG00000001097 vs. L. salmonis peptides
Match: EMLSAP00000001097 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:967131:967352:-1 gene:EMLSAG00000001097 transcript:EMLSAT00000001097 description:"augustus-LSalAtl2s117-processed-gene-9.3")

HSP 1 Score: 150.214 bits (378), Expect = 1.226e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MYGNEGVRRDEVSNLPRRWCREEISRGNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIHSXIQ 73
            MYGNEGVRRDEVSNLPRRWCREEISRGNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIHSXIQ
Sbjct:    1 MYGNEGVRRDEVSNLPRRWCREEISRGNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIHSXIQ 73
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BLAST of EMLSAG00000001097 vs. L. salmonis peptides
Match: EMLSAP00000002677 (pep:novel supercontig:LSalAtl2s:LSalAtl2s154:562822:564714:-1 gene:EMLSAG00000002677 transcript:EMLSAT00000002677 description:"maker-LSalAtl2s154-augustus-gene-5.11")

HSP 1 Score: 111.309 bits (277), Expect = 3.732e-31
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 0 
Query:    3 GNEGVRRDEVSNLPRRWCREEISRGNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKI 68
            GNEGVRR EVS LPR WCREEISRGNRT V+YI+P GVRVRNRNELGKVL EHYDLTA D+ S KI
Sbjct:   16 GNEGVRRVEVSTLPRGWCREEISRGNRTDVHYISPLGVRVRNRNELGKVLGEHYDLTAFDYSSGKI 81
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BLAST of EMLSAG00000001097 vs. nr
Match: gi|919087540|ref|XP_013380854.1| (PREDICTED: methyl-CpG-binding domain protein 2-like [Lingula anatina])

HSP 1 Score: 54.299 bits (129), Expect = 5.957e-7
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0 
Query:    8 RRDEVSNLPRRWCREEISR-----GNRTGVYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKI-HSXIQ 73
            RR + + LP  W REE+ R       +T VYYI+P G + R++ +L + L + YDLTA D  + KI HS I+
Sbjct:    6 RRSDCTGLPSGWMREEVVRKSGLSAGKTDVYYISPDGRKFRSKPQLARHLGDLYDLTAFDFRTGKIVHSSIR 77
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BLAST of EMLSAG00000001097 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold17_size721972-snap-gene-2.9 (protein:Tk09963 transcript:maker-scaffold17_size721972-snap-gene-2.9-mRNA-1 annotation:"methyl- binding transcription")

HSP 1 Score: 53.5286 bits (127), Expect = 2.266e-10
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 0 
Query:    6 GVRRDEVSNLPRRWCREEISR--------GNRTG-------VYYIAPTGVRVRNRNELGKVLAEHYDLTASDHFSEKIH 69
            G RR EV+ LP+ W REE  R        G + G       V Y +P G  ++++ EL K L EHYD+TA D  S KI+
Sbjct:   59 GYRRSEVAGLPKGWIREESPRFPTHLHNGGFQNGSSQTPVDVVYYSPRGQVIKSKPELAKALGEHYDVTAFDFQSGKIN 137
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001097 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-5.268e-533.33symbol:mbd3a "methyl-CpG binding domain protein 3a... [more]
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BLAST of EMLSAG00000001097 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592850921|gb|GAXK01106623.1|1.666e-940.00TSA: Calanus finmarchicus comp118638_c0_seq1 trans... [more]
gi|592803746|gb|GAXK01150822.1|1.094e-141.86TSA: Calanus finmarchicus comp154982_c0_seq1 trans... [more]
gi|592929682|gb|GAXK01028863.1|1.510e+046.15TSA: Calanus finmarchicus comp626038_c0_seq1 trans... [more]
gi|592917938|gb|GAXK01040437.1|6.394e+051.85TSA: Calanus finmarchicus comp146613_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001097 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000010971.226e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:96713... [more]
EMLSAP000000026773.732e-3181.82pep:novel supercontig:LSalAtl2s:LSalAtl2s154:56282... [more]
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BLAST of EMLSAG00000001097 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001097 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001097 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|919087540|ref|XP_013380854.1|5.957e-741.67PREDICTED: methyl-CpG-binding domain protein 2-lik... [more]
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BLAST of EMLSAG00000001097 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold17_size721972-snap-gene-2.92.266e-1040.51protein:Tk09963 transcript:maker-scaffold17_size72... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:967131..967352 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s117-processed-gene-9.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001097 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001097EMLSAT00000001097-696944Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:967131..967352-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001097-683863 ID=EMLSAG00000001097-683863|Name=EMLSAG00000001097|organism=Lepeophtheirus salmonis|type=gene|length=222bp|location=Sequence derived from alignment at LSalAtl2s117:967131..967352- (Lepeophtheirus salmonis)
ATGTATGGAAATGAAGGAGTGAGACGTGATGAGGTGTCGAATCTACCTAG
AAGATGGTGTCGTGAAGAAATATCCCGTGGGAACAGAACGGGTGTGTATT
ACATTGCTCCTACTGGGGTTCGAGTAAGGAATCGAAACGAACTCGGGAAA
GTGCTTGCGGAACATTATGATCTCACTGCCTCCGACCATTTCTCTGAGAA
AATCCATTCTRCCATCCAATAA
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