EMLSAG00000001103, EMLSAG00000001103-683869 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770821|gb|GAXK01183747.1| (TSA: Calanus finmarchicus comp56905_c2_seq6 transcribed RNA sequence) HSP 1 Score: 57.3806 bits (137), Expect = 9.857e-11 Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMD 100 CE ++ CC S S +P+RCFELNGC GL+W GR+ CS L VS+ I SL+ ++ + Sbjct: 51 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAIASLSRKVRE 218
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770824|gb|GAXK01183744.1| (TSA: Calanus finmarchicus comp56905_c2_seq3 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 2.543e-10 Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQI 98 CE ++ CC S S +P+RCFELNGC GL+W GR+ CS L VS+ I SL+ ++ Sbjct: 203 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAITSLSQKV 364
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770825|gb|GAXK01183743.1| (TSA: Calanus finmarchicus comp56905_c2_seq2 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 3.066e-10 Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMD 100 CE ++ CC S S +P+RCFELNGC GL+W GR+ CS L VS+ I SL+ ++ + Sbjct: 51 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAIASLSRKVRE 218 HSP 2 Score: 55.0694 bits (131), Expect = 2.099e-9 Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHI 91 CE AI CC +R +P+RCFE+NGC GL+W G+KACS L+ + I Sbjct: 357 CELAIVRCCDRDTAR-VLPLRCFEVNGCPGLYWYGQKACSKSLVASALNSI 506
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770826|gb|GAXK01183742.1| (TSA: Calanus finmarchicus comp56905_c2_seq1 transcribed RNA sequence) HSP 1 Score: 55.4546 bits (132), Expect = 3.076e-9 Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVS--LTTQIMDNDR 103 CE AI CC +R +P+RCFE+NGC GL+W G+KACS L+ + +I I DND Sbjct: 396 CELAIVRCCDRDTAR-VLPLRCFEVNGCPGLYWYGQKACSKSLVASALNNINKGRGKNTINDNDE 587 HSP 2 Score: 54.6842 bits (130), Expect = 6.382e-9 Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103 CE ++ CC S S +P+RCFELNGC GL+W GR+ CS L V + I SL+ ++ ++ Sbjct: 123 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSPSL---VQSAIASLSRKVQRKNQ 299
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770823|gb|GAXK01183745.1| (TSA: Calanus finmarchicus comp56905_c2_seq4 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 5.747e-9 Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0 Query: 48 CCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIK 114 CC S S +P+RCFELNGC GL+W GR+ CS L VS+ I SL+ ++ R I IK Sbjct: 155 CCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAITSLSQKVGRRTRI*KEENIIRIK 343
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592791111|gb|GAXK01163457.1| (TSA: Calanus finmarchicus comp219032_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 3.889e-8 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103 CE +I +CCQ T R +P RCFE+NGC GL W G++AC + V++ I +L+ N R Sbjct: 79 CELSIVNCCQLT--RQILPFRCFEVNGCPGLIWHGQQACGEKM---VASAISALSKCRQSNKR 252
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770822|gb|GAXK01183746.1| (TSA: Calanus finmarchicus comp56905_c2_seq5 transcribed RNA sequence) HSP 1 Score: 50.0618 bits (118), Expect = 4.264e-8 Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0 Query: 59 PVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIK 114 P+RCFELNGC GL+W GR+ CS L VS+ I SL+ ++ R I IK Sbjct: 155 PLRCFELNGCPGLYWFGRRTCSQAL---VSSAITSLSQKVGRRTRI*KEENIIRIK 313
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592916581|gb|GAXK01041794.1| (TSA: Calanus finmarchicus comp2068142_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 1.420e-7 Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACS 80 C I CC + +P+RCFE+NGC GL+W GRKAC+ Sbjct: 263 CVVTIVRCCDPEAQNNALPLRCFEVNGCPGLYWYGRKACA 382
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592937200|gb|GAXK01021353.1| (TSA: Calanus finmarchicus comp1606121_c0_seq2 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 4.733e-7 Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDN 101 C+ +I CC S + +P RCFE+NGC G++W ++ CS+ L+ + + I + ++ N Sbjct: 310 CQLSIVRCCDSPQQK-VLPYRCFEVNGCPGIYWHSKQTCSNSLVASAISAISNTKIKVAGN 489
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592937199|gb|GAXK01021354.1| (TSA: Calanus finmarchicus comp1606121_c0_seq3 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 5.288e-7 Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDN 101 C+ +I CC S + +P RCFE+NGC G++W ++ CS+ L+ + + I + ++ N Sbjct: 309 CQLSIVRCCDSPQQK-VLPYRCFEVNGCPGIYWHSKQTCSNSLVASAISAISNTKIKVAGN 488
BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Match: EMLSAP00000001103 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1185:182975:183411:-1 gene:EMLSAG00000001103 transcript:EMLSAT00000001103 description:"augustus_masked-LSalAtl2s1185-processed-gene-1.0") HSP 1 Score: 232.261 bits (591), Expect = 1.248e-79 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 Query: 1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR Sbjct: 1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115
BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1034_size68570-snap-gene-0.13 (protein:Tk10483 transcript:maker-scaffold1034_size68570-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein YQE_08514 partial") HSP 1 Score: 77.7962 bits (190), Expect = 5.038e-20 Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0 Query: 8 LLICLCTLLLLGSAQGFIGRVRAR------RMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103 LL+ L L+G+ QG G+ A + AM+ LD CE+AIW+CCQST S + +P +CF NGC GL W G + CS+ ++N ++ I S ++ ++ + Sbjct: 18 LLVLAFGLALMGAPQGTRGQQGALTQQQLFQTAMANLDSCERAIWNCCQSTRSNNQLPEQCFARNGCPGLFWHGSRVCSARMLNGIALRIQSTMVEVANSQQ 119 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001103 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 19
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BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001103 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001103 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001103 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1185:182975..183411- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001103-683869 ID=EMLSAG00000001103-683869|Name=EMLSAG00000001103|organism=Lepeophtheirus salmonis|type=gene|length=437bp|location=Sequence derived from alignment at LSalAtl2s1185:182975..183411- (Lepeophtheirus salmonis)back to top Add to Basket
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