EMLSAG00000001103, EMLSAG00000001103-683869 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001103
Unique NameEMLSAG00000001103-683869
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770821|gb|GAXK01183747.1| (TSA: Calanus finmarchicus comp56905_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 57.3806 bits (137), Expect = 9.857e-11
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMD 100
            CE ++  CC    S S +P+RCFELNGC GL+W GR+ CS  L   VS+ I SL+ ++ +
Sbjct:   51 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAIASLSRKVRE 218          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770824|gb|GAXK01183744.1| (TSA: Calanus finmarchicus comp56905_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 56.9954 bits (136), Expect = 2.543e-10
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQI 98
            CE ++  CC    S S +P+RCFELNGC GL+W GR+ CS  L   VS+ I SL+ ++
Sbjct:  203 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAITSLSQKV 364          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770825|gb|GAXK01183743.1| (TSA: Calanus finmarchicus comp56905_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 56.9954 bits (136), Expect = 3.066e-10
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMD 100
            CE ++  CC    S S +P+RCFELNGC GL+W GR+ CS  L   VS+ I SL+ ++ +
Sbjct:   51 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAIASLSRKVRE 218          

HSP 2 Score: 55.0694 bits (131), Expect = 2.099e-9
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHI 91
            CE AI  CC    +R  +P+RCFE+NGC GL+W G+KACS  L+ +    I
Sbjct:  357 CELAIVRCCDRDTAR-VLPLRCFEVNGCPGLYWYGQKACSKSLVASALNSI 506          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770826|gb|GAXK01183742.1| (TSA: Calanus finmarchicus comp56905_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 55.4546 bits (132), Expect = 3.076e-9
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVS--LTTQIMDNDR 103
            CE AI  CC    +R  +P+RCFE+NGC GL+W G+KACS  L+ +   +I        I DND 
Sbjct:  396 CELAIVRCCDRDTAR-VLPLRCFEVNGCPGLYWYGQKACSKSLVASALNNINKGRGKNTINDNDE 587          

HSP 2 Score: 54.6842 bits (130), Expect = 6.382e-9
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103
            CE ++  CC    S S +P+RCFELNGC GL+W GR+ CS  L   V + I SL+ ++   ++
Sbjct:  123 CELSLVRCCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSPSL---VQSAIASLSRKVQRKNQ 299          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770823|gb|GAXK01183745.1| (TSA: Calanus finmarchicus comp56905_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 52.373 bits (124), Expect = 5.747e-9
Identity = 30/67 (44.78%), Postives = 38/67 (56.72%), Query Frame = 0
Query:   48 CCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIK 114
            CC    S S +P+RCFELNGC GL+W GR+ CS  L   VS+ I SL+ ++    R      I  IK
Sbjct:  155 CCDVKQS-SVLPLRCFELNGCPGLYWFGRRTCSQAL---VSSAITSLSQKVGRRTRI*KEENIIRIK 343          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592791111|gb|GAXK01163457.1| (TSA: Calanus finmarchicus comp219032_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 3.889e-8
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103
            CE +I +CCQ T  R  +P RCFE+NGC GL W G++AC   +   V++ I +L+     N R
Sbjct:   79 CELSIVNCCQLT--RQILPFRCFEVNGCPGLIWHGQQACGEKM---VASAISALSKCRQSNKR 252          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592770822|gb|GAXK01183746.1| (TSA: Calanus finmarchicus comp56905_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 50.0618 bits (118), Expect = 4.264e-8
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0
Query:   59 PVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIK 114
            P+RCFELNGC GL+W GR+ CS  L   VS+ I SL+ ++    R      I  IK
Sbjct:  155 PLRCFELNGCPGLYWFGRRTCSQAL---VSSAITSLSQKVGRRTRI*KEENIIRIK 313          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592916581|gb|GAXK01041794.1| (TSA: Calanus finmarchicus comp2068142_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.420e-7
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACS 80
            C   I  CC      + +P+RCFE+NGC GL+W GRKAC+
Sbjct:  263 CVVTIVRCCDPEAQNNALPLRCFEVNGCPGLYWYGRKACA 382          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592937200|gb|GAXK01021353.1| (TSA: Calanus finmarchicus comp1606121_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 48.521 bits (114), Expect = 4.733e-7
Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDN 101
            C+ +I  CC S   +  +P RCFE+NGC G++W  ++ CS+ L+ +  + I +   ++  N
Sbjct:  310 CQLSIVRCCDSPQQK-VLPYRCFEVNGCPGIYWHSKQTCSNSLVASAISAISNTKIKVAGN 489          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592937199|gb|GAXK01021354.1| (TSA: Calanus finmarchicus comp1606121_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 5.288e-7
Identity = 20/61 (32.79%), Postives = 36/61 (59.02%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDN 101
            C+ +I  CC S   +  +P RCFE+NGC G++W  ++ CS+ L+ +  + I +   ++  N
Sbjct:  309 CQLSIVRCCDSPQQK-VLPYRCFEVNGCPGIYWHSKQTCSNSLVASAISAISNTKIKVAGN 488          
BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Match: EMLSAP00000001103 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1185:182975:183411:-1 gene:EMLSAG00000001103 transcript:EMLSAT00000001103 description:"augustus_masked-LSalAtl2s1185-processed-gene-1.0")

HSP 1 Score: 232.261 bits (591), Expect = 1.248e-79
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query:    1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115
            MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR
Sbjct:    1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115          
BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1034_size68570-snap-gene-0.13 (protein:Tk10483 transcript:maker-scaffold1034_size68570-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein YQE_08514 partial")

HSP 1 Score: 77.7962 bits (190), Expect = 5.038e-20
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0
Query:    8 LLICLCTLLLLGSAQGFIGRVRAR------RMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103
            LL+    L L+G+ QG  G+  A       + AM+ LD CE+AIW+CCQST S + +P +CF  NGC GL W G + CS+ ++N ++  I S   ++ ++ +
Sbjct:   18 LLVLAFGLALMGAPQGTRGQQGALTQQQLFQTAMANLDSCERAIWNCCQSTRSNNQLPEQCFARNGCPGLFWHGSRVCSARMLNGIALRIQSTMVEVANSQQ 119          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001103 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 19
Match NameE-valueIdentityDescription
gi|592770821|gb|GAXK01183747.1|9.857e-1146.67TSA: Calanus finmarchicus comp56905_c2_seq6 transc... [more]
gi|592770824|gb|GAXK01183744.1|2.543e-1048.28TSA: Calanus finmarchicus comp56905_c2_seq3 transc... [more]
gi|592770825|gb|GAXK01183743.1|3.066e-1046.67TSA: Calanus finmarchicus comp56905_c2_seq2 transc... [more]
gi|592770826|gb|GAXK01183742.1|3.076e-944.62TSA: Calanus finmarchicus comp56905_c2_seq1 transc... [more]
gi|592770823|gb|GAXK01183745.1|5.747e-944.78TSA: Calanus finmarchicus comp56905_c2_seq4 transc... [more]
gi|592791111|gb|GAXK01163457.1|3.889e-842.86TSA: Calanus finmarchicus comp219032_c0_seq1 trans... [more]
gi|592770822|gb|GAXK01183746.1|4.264e-846.43TSA: Calanus finmarchicus comp56905_c2_seq5 transc... [more]
gi|592916581|gb|GAXK01041794.1|1.420e-750.00TSA: Calanus finmarchicus comp2068142_c0_seq1 tran... [more]
gi|592937200|gb|GAXK01021353.1|4.733e-732.79TSA: Calanus finmarchicus comp1606121_c0_seq2 tran... [more]
gi|592937199|gb|GAXK01021354.1|5.288e-732.79TSA: Calanus finmarchicus comp1606121_c0_seq3 tran... [more]

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BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011031.248e-79100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1185:1829... [more]
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BLAST of EMLSAG00000001103 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1034_size68570-snap-gene-0.135.038e-2038.24protein:Tk10483 transcript:maker-scaffold1034_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1185supercontigLSalAtl2s1185:182975..183411 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1185-processed-gene-1.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001103 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001103EMLSAT00000001103-696950Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1185:182975..183411-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001103-683869 ID=EMLSAG00000001103-683869|Name=EMLSAG00000001103|organism=Lepeophtheirus salmonis|type=gene|length=437bp|location=Sequence derived from alignment at LSalAtl2s1185:182975..183411- (Lepeophtheirus salmonis)
ATGTTTCGCAAGTCTCCAGCCCTTCTCATATGTTTATGCACTCTTCTTCT CCTTGGAAGTGCACAAGGATTCATTGGTAGAGTACGTGCACGTCGAATGG CCATGTCTATGTTGGATCCCTGCGAGAAAGCTATTTGGAGGTACATGGAT ATATAATATAATAAATTATTAAACTGTACTCCAGAAACAGGGGATTTCAT TAATTTAAATGTTTTATGTACAATTTCAGCTGCTGTCAATCCACTAATTC AAGGTCCTTTGTTCCTGTTCGATGTTTTGAGCTGAATGGTTGTTACGGAC TTCATTGGATGGGACGCAAAGCCTGCTCCTCTGGTTTAATGAATGCTGTA AGTACGCACATCGTCTCACTTACAACACAAATCATGGATAATGACAGAGC ACTCAGTNNNNNTCCTATCACAGTAATAAAACGATAA
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