EMLSAG00000001115, EMLSAG00000001115-683881 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592770443|gb|GAXK01184125.1| (TSA: Calanus finmarchicus comp134519_c2_seq1 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 2.631e-5 Identity = 25/79 (31.65%), Postives = 39/79 (49.37%), Query Frame = 0 Query: 29 KSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALI 107 S CDLC ++T + + + DQ++E+VEEIC + C + + L IE +L G+ P +I ALI Sbjct: 100 SSATCDLCIAVVTGLEDYITDDTTMDQILEKVEEICKTLGALEGL----CIQTIESYLPGIIEGILDGQLNPNQICALI 324
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592779084|gb|GAXK01175484.1| (TSA: Calanus finmarchicus comp2310_c2_seq3 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 6.537e-1 Identity = 17/76 (22.37%), Postives = 37/76 (48.68%), Query Frame = 0 Query: 28 EKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKI 103 + + C +C ++T ++ + ++ Q++E VE+IC+ + L TC V L I+ L+ P+++ Sbjct: 420 KNDLTCSICVDVVTDIDNFITSETTEQQIVEFVEQICSALGAILPDLVATCNALVESQLPAIIDGLVNDNLNPQEV 647
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592779085|gb|GAXK01175483.1| (TSA: Calanus finmarchicus comp2310_c2_seq2 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 7.253e-1 Identity = 17/76 (22.37%), Postives = 37/76 (48.68%), Query Frame = 0 Query: 28 EKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKI 103 + + C +C ++T ++ + ++ Q++E VE+IC+ + L TC V L I+ L+ P+++ Sbjct: 539 KNDLTCSICVDVVTDIDNFITSETTEQQIVEFVEQICSALGAILPDLVATCNALVESQLPAIIDGLVNDNLNPQEV 766
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592779086|gb|GAXK01175482.1| (TSA: Calanus finmarchicus comp2310_c2_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 7.381e-1 Identity = 17/76 (22.37%), Postives = 37/76 (48.68%), Query Frame = 0 Query: 28 EKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKI 103 + + C +C ++T ++ + ++ Q++E VE+IC+ + L TC V L I+ L+ P+++ Sbjct: 563 KNDLTCSICVDVVTDIDNFITSETTEQQIVEFVEQICSALGAILPDLVATCNALVESQLPAIIDGLVNDNLNPQEV 790
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592762225|gb|GAXK01192188.1| (TSA: Calanus finmarchicus comp40403_c2_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 9.307e-1 Identity = 19/75 (25.33%), Postives = 36/75 (48.00%), Query Frame = 0 Query: 33 CDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALI 107 CDLCK ++T ++E + +I+ V IC + L C + D + IE+L+ +P+++ L+ Sbjct: 141 CDLCKQIVTAIDEFLTDGSTEQDIIDYVNGIC---DNLPFPLDTVCKTTLADKIGEIIENLVNNNLQPQEVCELL 356
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592857039|gb|GAXK01100505.1| (TSA: Calanus finmarchicus comp6655_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.140e+0 Identity = 12/71 (16.90%), Postives = 35/71 (49.30%), Query Frame = 0 Query: 30 SVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEP 100 ++ C++C ++T + + + ++++ ++E+C ++ + TC + L I+DL+ +P Sbjct: 98 ALTCEICVDIVTDFDNWLTSDKTEAEIVDYIKELCHALGQLIAGFEATCNFLIESQLPGIIDDLVNSNLDP 310
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592785566|gb|GAXK01169002.1| (TSA: Calanus finmarchicus comp992_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 2.512e+0 Identity = 16/75 (21.33%), Postives = 33/75 (44.00%), Query Frame = 0 Query: 29 KSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKI 103 + CD+C ++T ++ + + ++I+ V++ICA + TC V L IE + +P + Sbjct: 107 NELTCDICMDIMTDLDNFITSDTTEGEIIDFVKQICAALGAIIDGFEATCNLLVATQLPAIIEGFVNDNMDPTSV 331
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592858515|gb|GAXK01099047.1| (TSA: Calanus finmarchicus comp239186_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 3.363e+0 Identity = 19/79 (24.05%), Postives = 36/79 (45.57%), Query Frame = 0 Query: 29 KSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALI 107 +S CDLC ++T +++ + +I+ VE +CA + L E C + + I+ L++G P + I Sbjct: 121 RSPGCDLCIQIVTAIDDFITDASTEQDIIDFVEGLCAN---LGWPLDELCESMIESYIPQIIDGLVSGNLNPGDVCRSI 348
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592779257|gb|GAXK01175311.1| (TSA: Calanus finmarchicus comp3269_c3_seq2 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 5.976e+0 Identity = 14/68 (20.59%), Postives = 31/68 (45.59%), Query Frame = 0 Query: 36 CKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKI 103 C ++T ++ + ++ ++I+ V++ICA + TC V L IE + +P ++ Sbjct: 2 CMDIMTDLDNFITSESTEQEIIDFVKQICATLGAIIPGFEATCNLLVGSQLPDIIEGFVNDNMDPTQV 205
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Match: gi|592786346|gb|GAXK01168222.1| (TSA: Calanus finmarchicus comp883_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 6.118e+0 Identity = 24/74 (32.43%), Postives = 37/74 (50.00%), Query Frame = 0 Query: 29 KSVKCDLCKYLITKVNESVLTQDNADQ-VIEEVEEIC-AQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEP 100 + C +C ++T +E LT D +Q +I VEE+C A Q ++ F TC V L I+DL+ +P Sbjct: 193 NDLTCQICVDIVTDFDEW-LTSDKTEQEIITFVEELCHAIGQLITGF-EATCNALVEAQLPAIIDDLVNSNLDP 408
BLAST of EMLSAG00000001115 vs. L. salmonis peptides
Match: EMLSAP00000001115 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:244812:273376:-1 gene:EMLSAG00000001115 transcript:EMLSAT00000001115 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.12") HSP 1 Score: 785.023 bits (2026), Expect = 0.000e+0 Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 0 Query: 1 MINMRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALIVASAYAAPEAXADADPHHAYGGHVRSYGYGGYHGRPAYGYGYSGSHYLGKREAEPTADPEADPHHAYGGRVRSYGYGGYHGRPSYGYGYGRPHYLGKREAEPTADADPGYGKMKTFFTIVALIVASAYAAPEAEAXADPHHAYGGHIVAVLVASVYAAPEAEADPHRVYGGRVRPYGYGGFYGRPAHGYGYGRPHYLGKRDAXPXADPEADPHHGYYGYPSYGYPSXGYSSYGHGSYGSYGFRPHHFLGKREAEPTADPSHGYASSYGYGGHYGRPSYGYGRPSYGYGRPXYGHGRPYYY 407 MINMRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALIVASAYAAPEAXADADPHHAYGGHVRSYGYGGYHGRPAYGYGYSGSHYLGKREAEPTADPEADPHHAYGGRVRSYGYGGYHGRPSYGYGYGRPHYLGKREAEPTADADPGYGKMKTFFTIVALIVASAYAAPEAEAXADPHHAYGGHIVAVLVASVYAAPEAEADPHRVYGGRVRPYGYGGFYGRPAHGYGYGRPHYLGKRDAXPXADPEADPHHGYYGYPSYGYPSXGYSSYGHGSYGSYGFRPHHFLGKREAEPTADPSHGYASSYGYGGHYGRPSYGYGRPSYGYGRPXYGHGRPYYY Sbjct: 1 MINMRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALIVASAYAAPEAXADADPHHAYGGHVRSYGYGGYHGRPAYGYGYSGSHYLGKREAEPTADPEADPHHAYGGRVRSYGYGGYHGRPSYGYGYGRPHYLGKREAEPTADADPGYGKMKTFFTIVALIVASAYAAPEAEAXADPHHAYGGHIVAVLVASVYAAPEAEADPHRVYGGRVRPYGYGGFYGRPAHGYGYGRPHYLGKRDAXPXADPEADPHHGYYGYPSYGYPSXGYSSYGHGSYGSYGFRPHHFLGKREAEPTADPSHGYASSYGYGGHYGRPSYGYGRPSYGYGRPXYGHGRPYYY 407
BLAST of EMLSAG00000001115 vs. L. salmonis peptides
Match: EMLSAP00000011320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s780:164064:164683:1 gene:EMLSAG00000011320 transcript:EMLSAT00000011320 description:"maker-LSalAtl2s780-augustus-gene-1.14") HSP 1 Score: 167.548 bits (423), Expect = 2.274e-50 Identity = 78/98 (79.59%), Postives = 85/98 (86.73%), Query Frame = 0 Query: 4 MRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPE 101 M+FL LFALVAVASA TVSKDQMIEKS KCD CKY+I NESVLT DNAD I++VEEICAQAQ SSFLGETCT+FVNDVLKPKIE++LA KQEPE Sbjct: 1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPE 98
BLAST of EMLSAG00000001115 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37") HSP 1 Score: 122.094 bits (305), Expect = 1.780e-33 Identity = 51/99 (51.52%), Postives = 77/99 (77.78%), Query Frame = 0 Query: 4 MRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEK 102 MR L AL+AVASA T+ + + EK++KCD CK+++ K+NESV +++N D+ +++++EIC + +EVS FLGETC +F+ +V+KPKIEDLLA K PE+ Sbjct: 1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEE 99
BLAST of EMLSAG00000001115 vs. L. salmonis peptides
Match: EMLSAP00000001533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:70293:71465:1 gene:EMLSAG00000001533 transcript:EMLSAT00000001533 description:"maker-LSalAtl2s1265-augustus-gene-0.8") HSP 1 Score: 51.2174 bits (121), Expect = 2.737e-8 Identity = 28/91 (30.77%), Postives = 47/91 (51.65%), Query Frame = 0 Query: 17 SAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALI 107 SA +V KD S KC CK I V E + ++N +I+++E+ C Q + FL E C + +V+KP++ + + PE+ +I Sbjct: 14 SANSVDKD-----SSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHII 99
BLAST of EMLSAG00000001115 vs. L. salmonis peptides
Match: EMLSAP00000001114 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:215029:215570:-1 gene:EMLSAG00000001114 transcript:EMLSAT00000001114 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.9") HSP 1 Score: 51.6026 bits (122), Expect = 3.278e-8 Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 0 Query: 220 MKTFFTIVALIVASAYAAPEAEAXA----DPHHAYGGHI------VAVLVASVYAAPEAEADPHRVYGGRVRPYGYGGFYGRPAHGYGYGRPHYLGKRDAXPXADPEADPHHGYY 324 MKTFF+++A V SA+A+P+A+A A DP++ YGG A S + P +G R YGG H +GYG H+LGKRDA + EADP +GYY Sbjct: 1 MKTFFSVLAFFVVSAFASPDAKADAEADPDPYYGYGGLYGYGRPYAAAYTNSYFYTPRPVGYGGHSHGYGGRSLAYGG------HSFGYGG-HFLGKRDAEASPEAEADPGYGYY 108
BLAST of EMLSAG00000001115 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold541_size141817-snap-gene-0.32 (protein:Tk05607 transcript:maker-scaffold541_size141817-snap-gene-0.32-mRNA-1 annotation:"predicted protein") HSP 1 Score: 51.2174 bits (121), Expect = 2.025e-8 Identity = 29/98 (29.59%), Postives = 52/98 (53.06%), Query Frame = 0 Query: 7 LALFALVAVASAATVSKDQMIEK-SVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKI 103 + L ALVA A+ + EK ++ C C Y++T++++ + + + D VIE VE+IC + +S + + C F+ + IEDL+ P+ I Sbjct: 5 ILLIALVASLVASGARAEHPQEKGTILCAFCNYVVTEIDDFLTSAETEDDVIEFVEQICNIFEGISHDIAQACKIFIEENGPIIIEDLVDNNLSPDII 102 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001115 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001115 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000001115 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000001115 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001115 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001115 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001115 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1186:244812..273376- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001115-683881 ID=EMLSAG00000001115-683881|Name=EMLSAG00000001115|organism=Lepeophtheirus salmonis|type=gene|length=28565bp|location=Sequence derived from alignment at LSalAtl2s1186:244812..273376- (Lepeophtheirus salmonis)back to top Add to Basket
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