EMLSAG00000001121, EMLSAG00000001121-683887 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001121
Unique NameEMLSAG00000001121-683887
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001121 vs. C. finmarchicus
Match: gi|592955105|gb|GAXK01003448.1| (TSA: Calanus finmarchicus comp4695742_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.918e+0
Identity = 14/41 (34.15%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   43 TRPLNWKSGWREDLVYRKILFNNFLKISTFFFSGLRFLLIP 83
            T  + WK      +    I++N+FL ++ FFF+ L   LIP
Sbjct:  573 TMSVTWKCCNINFISIIFIVYNSFLTVNCFFFNSLHDFLIP 695
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BLAST of EMLSAG00000001121 vs. L. salmonis peptides
Match: EMLSAP00000001121 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1189:94828:96915:1 gene:EMLSAG00000001121 transcript:EMLSAT00000001121 description:"snap-LSalAtl2s1189-processed-gene-0.15")

HSP 1 Score: 170.629 bits (431), Expect = 3.011e-56
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 
Query:    1 MTNCHQKESCRLFILSSLSLCLIPYEYFGLCIEDDENRPRIDTRPLNWKSGWREDLVYRKILFNNFLKISTFFFSGLRFLLIP 83
            MTNCHQKESCRLFILSSLSLCLIPYEYFGLCIEDDENRPRIDTRPLNWKSGWREDLVYRKILFNNFLKISTFFFSGLRFLLIP
Sbjct:    1 MTNCHQKESCRLFILSSLSLCLIPYEYFGLCIEDDENRPRIDTRPLNWKSGWREDLVYRKILFNNFLKISTFFFSGLRFLLIP 83
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001121 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001121 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592955105|gb|GAXK01003448.1|5.918e+034.15TSA: Calanus finmarchicus comp4695742_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001121 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011213.011e-56100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1189:9482... [more]
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BLAST of EMLSAG00000001121 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001121 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001121 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001121 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1189supercontigLSalAtl2s1189:94828..96915 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1189-processed-gene-0.15
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001121 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001121EMLSAT00000001121-696968Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1189:94828..96915+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001121-683887 ID=EMLSAG00000001121-683887|Name=EMLSAG00000001121|organism=Lepeophtheirus salmonis|type=gene|length=2088bp|location=Sequence derived from alignment at LSalAtl2s1189:94828..96915+ (Lepeophtheirus salmonis)
ATGACAAACTGCCATCAGAAAGAATCTTGTCGTCTCTTTATATTATCTTC
TCTCTCTCTATGCTTAATCCCCTACGAGTACTTTGGATTGTAATAAATAA
TAATTTTTTATTTACTCATTGTTTATGTTTGTGACGTTACATAAGTTGCT
CAAGACCCGTGGGACGTTGTTAGATTGGTCACTAATAGACGATTGAACCT
CGGAATCAAGTCAAGTAATAGTATGAAATATTTGCATTTTTAAATAATTG
TCCACTTGGACCTCTGACTATTCCAATTCGAGTAATTCCAATTACAATTT
ATACGACTTATGACTGAGCAATGGAATAAAATATACGTTCCATCTCCAAG
CACGAGTTTGAGAGTGTTGAAACTTGAAATGGTTTGTAACTCTACAAGTC
AACTGGGGAGTTCATATAATTATAGTTAACTTGTTAGTTATTCAGATGTA
TTGAGGACGATGAAAACAGGCCGAGGATTGATACGAGGCCCTTGAATTGG
AAATCTGGATGGAGAGAAGACCTTGTATATAGGAAAATACTCTTTAATAA
CTTCCTGAAAATAAGGTAAGCTCCTGAATTTTGTTTTAAGGGTGAATATA
TGTGGTCGATCAACACAAAAGCAAGCTAGATATTTCTCGAAATTACATTT
CGTGGGTTAAGGCCAAAATTATATCATTCAAAAATTACAAACATTTGTTT
TATGGCCTATATGTCATCGTAGAAGTACAATATTATTGAATGTTAATATT
TAAAAACAGAGAAATTCAGACGCTATATTAAGATAAATAGGATAATTTGG
GAAACACCGTTATTCATAATAACTAAAAATAGGAGTTTCAACCTTAATTC
TGCTATTTGTAAATATTTGATTTACGTTAATTAGGCTCTCATCCCACTAT
TTGTACTCATCTATCAATTATTATCGTTAACTTATTACAACAAATTATTC
CAATTAATCCCTTAAAGGTGCCGTAATTTACAATTAAATTAGTAAAAAGA
TAGATTTGATCATTCATGTATTTGAAAGGTCATTTTTGTGTCCAATTAAA
TATCTTTAACCAAATGATGGCCCTTAAAATATAGTTCACATGCTTGGATA
TCTCAACTTATCCCAGAAATTTGAATTATAAGTCTATAATTGATTCAATG
ATGTATATGGAGTATTGGGCTATAATCTGTATAAATTTTGTGTTCAAGTT
GCAACTTGTAAAAGCAAATCTTAGAAGTTTTATTTTCTTCGTATTAAAAT
GTTTAATTTAATTACGATATTATCAACTATTAATTGATACCATTATCTCA
TTTTGATCTATTCATATTAAATGGTTATTAATAATAATCATAATCACTTA
TTATATATTCATGAGTTCTGTATCTGTGAGCATTTGAACTAAATTATGTG
CCACATAATAATTATATCCTAGTTAAAATAGCCAAGAATGTCACCATTGA
TATGTGTATCCTGCATAGAATATTCATTTATTGTATTAACCTCATCCGAA
GTACTAAATCCTACATTCACAATTATTTATCTCATATTTTGGGTGCAATT
AGTACAAAATCCCAACTTGTACACAACACATATCCGAATATGATGTAAGA
AATTAAAAATATTTATCAATTTCTTGTTGTTTTTTTTCAGTCTGTTTTTG
TTTTATCTCATTTTATATGCTCCTTATTTAAGTTGTATTTGATTCATATA
ACTATGTGAGTAGTTTTCATCAGGAGTTGTTATATCTACTTAATCGAACT
TGAATACATTTAATTCTTTTTTATTTTTTTTTGTGTAATGTGTTCAGTTT
TTACAAACATATTTTGTCTTATGTTCTTTTTATAATTTCATTGGGTGTTT
AAAATTTAGATATCCATACAGTTAGGTAAATGCATGCATATATTTAATAT
CTTTAATCCTGTTTTCTAAACAACTGATCAAAGTATATGATGAAAAATCT
AATTTGCCCCTTTTTTGAAAATATAGTAGGGATTGAAGCTATTTAGTATA
TATCTATGACTTTGATAGCTAAAATTTTACTTATTTCTTTCACAGTACGT
TCTTTTTTTCTGGACTTAGATTCCTCCTTATACCATAA
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