EMLSAG00000001125, EMLSAG00000001125-683891 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001125
Unique NameEMLSAG00000001125-683891
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592892385|gb|GAXK01065990.1| (TSA: Calanus finmarchicus comp4260_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.609e-2
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 0 
Query:   65 AGPNTKGSQFFICT 78
            AGPNT GSQFFICT
Sbjct:  470 AGPNTNGSQFFICT 511
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592786337|gb|GAXK01168231.1| (TSA: Calanus finmarchicus comp366_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 5.191e-2
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 0 
Query:   65 AGPNTKGSQFFICT 78
            AGPNT GSQFF+CT
Sbjct:  371 AGPNTNGSQFFLCT 412
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592913989|gb|GAXK01044386.1| (TSA: Calanus finmarchicus comp5103297_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.962e-1
Identity = 17/65 (26.15%), Postives = 31/65 (47.69%), Query Frame = 0 
Query:   18 ITFQPDTQGKKFLFQKLVTFIVYYKASCVRWAILLIIIEEKTGCIDKAGPNTKGSQFFICTCVDI 82
            I++ P   G++FLFQK+      +++   +W  + +I +    C+    P T G    I T + I
Sbjct:  159 ISWAPIRDGRQFLFQKITECSAQFRSRITKWVTIFVITQISLLCVFPT-PMTPGPSVGILTLLII 350
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592772893|gb|GAXK01181675.1| (TSA: Calanus finmarchicus comp128686_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.784e-1
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 0 
Query:   65 AGPNTKGSQFFICT 78
            AGPNT GSQFF+ T
Sbjct:  461 AGPNTNGSQFFVST 502
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592779060|gb|GAXK01175508.1| (TSA: Calanus finmarchicus comp3873_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.456e+0
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 0 
Query:   65 AGPNTKGSQFFICT 78
            AGP+T GSQFFI T
Sbjct:  385 AGPDTNGSQFFITT 426
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592846881|gb|GAXK01110663.1| (TSA: Calanus finmarchicus comp3810942_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.472e+0
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 0 
Query:   64 KAGPNTKGSQFFICTC 79
             AG NT GSQFF+CT 
Sbjct:  175 NAGANTNGSQFFLCTS 222
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592954082|gb|GAXK01004471.1| (TSA: Calanus finmarchicus comp4880247_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.179e+0
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:    2 LDASFFELIHDFVKLR-ITFQPDTQGKKFLFQ 32
            LD  FFE +HD +KL  I FQ D  G +  FQ
Sbjct:  567 LDIRFFEFVHDLLKLAGIIFQRDKIGFRVCFQ 662
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592931822|gb|GAXK01026731.1| (TSA: Calanus finmarchicus comp19391_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.397e+0
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 0 
Query:   65 AGPNTKGSQFFI 76
            AGPNT GSQFF+
Sbjct: 1879 AGPNTNGSQFFV 1914
[Close]
BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592807163|gb|GAXK01147405.1| (TSA: Calanus finmarchicus comp42352_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.087e+0
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 0 
Query:   66 GPNTKGSQFFICT 78
            GPNT GSQFF+ T
Sbjct:  379 GPNTNGSQFFVLT 417
[Close]
BLAST of EMLSAG00000001125 vs. C. finmarchicus
Match: gi|592942009|gb|GAXK01016544.1| (TSA: Calanus finmarchicus comp3599333_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.565e+0
Identity = 15/46 (32.61%), Postives = 25/46 (54.35%), Query Frame = 0 
Query:   19 TFQPDTQGKKFLFQKLVTFIVYYKA---SCVRWAILLIIIEEKTGC 61
             F  D  GK +LF K+  FI+ Y     S + +A+++ +IE+   C
Sbjct:  360 VFLHDF*GKLYLFGKITPFIINYSGYHLSFISFAVVIDMIEDVVNC 497
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BLAST of EMLSAG00000001125 vs. L. salmonis peptides
Match: EMLSAP00000001125 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:191854:192176:1 gene:EMLSAG00000001125 transcript:EMLSAT00000001125 description:"maker-LSalAtl2s118-snap-gene-2.2")

HSP 1 Score: 177.563 bits (449), Expect = 5.488e-59
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 
Query:    1 MLDASFFELIHDFVKLRITFQPDTQGKKFLFQKLVTFIVYYKASCVRWAILLIIIEEKTGCIDKAGPNTKGSQFFICTCVDILNSY 86
            MLDASFFELIHDFVKLRITFQPDTQGKKFLFQKLVTFIVYYKASCVRWAILLIIIEEKTGCIDKAGPNTKGSQFFICTCVDILNSY
Sbjct:    1 MLDASFFELIHDFVKLRITFQPDTQGKKFLFQKLVTFIVYYKASCVRWAILLIIIEEKTGCIDKAGPNTKGSQFFICTCVDILNSY 86
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001125 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001125 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592892385|gb|GAXK01065990.1|2.609e-292.86TSA: Calanus finmarchicus comp4260_c0_seq1 transcr... [more]
gi|592786337|gb|GAXK01168231.1|5.191e-285.71TSA: Calanus finmarchicus comp366_c0_seq1 transcri... [more]
gi|592913989|gb|GAXK01044386.1|3.962e-126.15TSA: Calanus finmarchicus comp5103297_c0_seq1 tran... [more]
gi|592772893|gb|GAXK01181675.1|9.784e-178.57TSA: Calanus finmarchicus comp128686_c0_seq1 trans... [more]
gi|592779060|gb|GAXK01175508.1|2.456e+078.57TSA: Calanus finmarchicus comp3873_c0_seq1 transcr... [more]
gi|592846881|gb|GAXK01110663.1|2.472e+068.75TSA: Calanus finmarchicus comp3810942_c0_seq1 tran... [more]
gi|592954082|gb|GAXK01004471.1|3.179e+050.00TSA: Calanus finmarchicus comp4880247_c0_seq1 tran... [more]
gi|592931822|gb|GAXK01026731.1|3.397e+083.33TSA: Calanus finmarchicus comp19391_c6_seq1 transc... [more]
gi|592807163|gb|GAXK01147405.1|4.087e+076.92TSA: Calanus finmarchicus comp42352_c0_seq1 transc... [more]
gi|592942009|gb|GAXK01016544.1|4.565e+032.61TSA: Calanus finmarchicus comp3599333_c0_seq1 tran... [more]

Pages

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BLAST of EMLSAG00000001125 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011255.488e-59100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:19185... [more]
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BLAST of EMLSAG00000001125 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001125 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001125 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001125 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:191854..192176 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s118-snap-gene-2.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001125 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001125EMLSAT00000001125-696972Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:191854..192176+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001125-683891 ID=EMLSAG00000001125-683891|Name=EMLSAG00000001125|organism=Lepeophtheirus salmonis|type=gene|length=323bp|location=Sequence derived from alignment at LSalAtl2s118:191854..192176+ (Lepeophtheirus salmonis)
ATGTTGGATGCATCGTTTTTTGAACTTATACATGACGTACATAGTTCGTA
AAACTGCGGATAACTTTTCAGCCTGATACACAGGGGAAAAAGTTTTTGTT
TCAAAAACTCGTAACTTTCATCGTATACTACAAGGCTTCATGTGTCAGGT
GGGCAATTTTACTAATCATAATAGAGGAAAGTAAATTTATATAAATAAAC
TTCCTGATGATAAATTTGATTTAAAATATACCAGAAACGGGATGCATAGA
TAAGGCTGGTCCAAATACAAAGGGATCTCAATTTTTTATATGTACTTGTG
TTGATATTTTAAATAGTTATTGA
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