EMLSAG00000001154, EMLSAG00000001154-683920 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001154
Unique NameEMLSAG00000001154-683920
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592862431|gb|GAXK01095131.1| (TSA: Calanus finmarchicus comp3462790_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.161e-1
Identity = 18/46 (39.13%), Postives = 24/46 (52.17%), Query Frame = 0 
Query:   11 TDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLS 56
            TDR P   FFFL GH+  L LR +L  V  +  + N  N +   +S
Sbjct:  154 TDRLPVSVFFFLLGHTHNL-LRCVLHAVFAQQMQSNTRNGISINIS 288
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592807886|gb|GAXK01146682.1| (TSA: Calanus finmarchicus comp1657954_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 5.977e-1
Identity = 14/30 (46.67%), Postives = 20/30 (66.67%), Query Frame = 0 
Query:   25 HSLRLTLRKLLSQVHTESFKENIENLVKEK 54
            H++RL L  LL  V  E +  N+ENLV+E+
Sbjct:  527 HTMRLVLDSLL--VRMEQYANNLENLVEER 610
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592957127|gb|GAXK01001429.1| (TSA: Calanus finmarchicus comp6010719_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.218e+0
Identity = 20/66 (30.30%), Postives = 31/66 (46.97%), Query Frame = 0 
Query:    2 KKKGYINVSTDRRPFLWFFF---LRGHSLRLTLRKLLSQVHTESFKENIENLVKEKL-SFAASRYS 63
            ++ G +N     R  +W  F   LR  +  LTL  +   +      E IEN++ E++ SFA   YS
Sbjct:   81 RRNGVMNRLESERTDIWNIFKLTLRKETYELTLANMFVGIIKNESIEKIENMLTEEIFSFAQKDYS 278
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592758270|gb|GAXK01196143.1| (TSA: Calanus finmarchicus comp700835_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.280e+0
Identity = 12/38 (31.58%), Postives = 23/38 (60.53%), Query Frame = 0 
Query:    5 GYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTES 42
            GY+++ ++ R FLW     G + ++ L+KL  +V T+ 
Sbjct: 1033 GYLSLDSNSRSFLWHLLTSGKN-KIILKKLPVRVRTQD 1143
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884304|gb|GAXK01074071.1| (TSA: Calanus finmarchicus comp122269_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.724e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2935 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 3093
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884305|gb|GAXK01074070.1| (TSA: Calanus finmarchicus comp122269_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.778e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2709 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2867
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884306|gb|GAXK01074069.1| (TSA: Calanus finmarchicus comp122269_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.778e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2721 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2879
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884307|gb|GAXK01074068.1| (TSA: Calanus finmarchicus comp122269_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.778e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2725 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2883
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884308|gb|GAXK01074067.1| (TSA: Calanus finmarchicus comp122269_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.778e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2737 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2895
[Close]
BLAST of EMLSAG00000001154 vs. C. finmarchicus
Match: gi|592884309|gb|GAXK01074066.1| (TSA: Calanus finmarchicus comp122269_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.779e+0
Identity = 15/55 (27.27%), Postives = 28/55 (50.91%), Query Frame = 0 
Query:    5 GYINVSTDR--RPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSF 57
             Y++    R   PFL+FF L  H L +    ++  +H + F +N  +++   L+F
Sbjct: 2748 NYLHFQFPRLCPPFLFFFLLYSHFLHVLFSLIILFLHIQLFYQN--HVLSPPLTF 2906
[Close]
BLAST of EMLSAG00000001154 vs. L. salmonis peptides
Match: EMLSAP00000001154 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1190:96680:97042:-1 gene:EMLSAG00000001154 transcript:EMLSAT00000001154 description:"maker-LSalAtl2s1190-augustus-gene-0.27")

HSP 1 Score: 147.902 bits (372), Expect = 1.067e-47
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 MKKKGYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSFAASRYSKFEKVFADC 72
            MKKKGYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSFAASRYSKFEKVFADC
Sbjct:    1 MKKKGYINVSTDRRPFLWFFFLRGHSLRLTLRKLLSQVHTESFKENIENLVKEKLSFAASRYSKFEKVFADC 72
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001154 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 16
Match NameE-valueIdentityDescription
gi|592862431|gb|GAXK01095131.1|3.161e-139.13TSA: Calanus finmarchicus comp3462790_c0_seq1 tran... [more]
gi|592807886|gb|GAXK01146682.1|5.977e-146.67TSA: Calanus finmarchicus comp1657954_c1_seq1 tran... [more]
gi|592957127|gb|GAXK01001429.1|1.218e+030.30TSA: Calanus finmarchicus comp6010719_c0_seq1 tran... [more]
gi|592758270|gb|GAXK01196143.1|2.280e+031.58TSA: Calanus finmarchicus comp700835_c1_seq1 trans... [more]
gi|592884304|gb|GAXK01074071.1|8.724e+027.27TSA: Calanus finmarchicus comp122269_c0_seq12 tran... [more]
gi|592884305|gb|GAXK01074070.1|8.778e+027.27TSA: Calanus finmarchicus comp122269_c0_seq11 tran... [more]
gi|592884306|gb|GAXK01074069.1|8.778e+027.27TSA: Calanus finmarchicus comp122269_c0_seq10 tran... [more]
gi|592884307|gb|GAXK01074068.1|8.778e+027.27TSA: Calanus finmarchicus comp122269_c0_seq9 trans... [more]
gi|592884308|gb|GAXK01074067.1|8.778e+027.27TSA: Calanus finmarchicus comp122269_c0_seq8 trans... [more]
gi|592884309|gb|GAXK01074066.1|8.779e+027.27TSA: Calanus finmarchicus comp122269_c0_seq7 trans... [more]

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BLAST of EMLSAG00000001154 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011541.067e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1190:9668... [more]
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BLAST of EMLSAG00000001154 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001154 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1190supercontigLSalAtl2s1190:96680..97042 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1190-augustus-gene-0.27
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001154 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001154EMLSAT00000001154-697001Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1190:96680..97042-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001154-683920 ID=EMLSAG00000001154-683920|Name=EMLSAG00000001154|organism=Lepeophtheirus salmonis|type=gene|length=363bp|location=Sequence derived from alignment at LSalAtl2s1190:96680..97042- (Lepeophtheirus salmonis)
ATGGTCACCAACCTTGGTCCTAAATCCACTCTATAACTAGAACCAAAGTT
CAACTTAGTTTGGACTTTTTTCTGCTCAATTTCGGTAGATCTCATTTGAA
TTTCGAATAATCGTAAATTTAAATTCAATATTCCTTTTTTTATTTAGAAA
AAAAAAGGATATATCAATGTCTCCACAGATCGAAGGCCCTTCTTATGGTT
TTTCTTCTTGCGAGGACACTCTCTTCGATTAACATTGAGGAAACTCTTGT
CTCAGGTCCACACTGAGAGTTTTAAGGAGAATATTGAGAATCTCGTCAAA
GAGAAGTTATCCTTTGCCGCATCTCGTTACTCCAAGTTTGAGAAGGTGTT
CGCGGATTGCTAA
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