EMLSAG00000001164, EMLSAG00000001164-683930 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001164
Unique NameEMLSAG00000001164-683930
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001164 vs. C. finmarchicus
Match: gi|592881183|gb|GAXK01076718.1| (TSA: Calanus finmarchicus comp99595_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.6766 bits (117), Expect = 2.984e-7
Identity = 26/80 (32.50%), Postives = 45/80 (56.25%), Query Frame = 0
Query:   19 ERRVFIALPIAQNDIRKSSKDNFSSGIHEVECPDIIGLCKFMLVSKSVEPSSIHTNYGPCVGKKSLFRLELSDVFKFAMC 98
            ++ + I L IAQ+D+ +       + +HE++   +IG  K M + K VE  SI++N  P V ++ +   +LS VFK A+ 
Sbjct:  568 DKGILITLSIAQDDLIELIHHTAGTFVHEIQSWFLIGFGKSMSIRKFVESFSINSNNNPGVRQQFILNFKLSGVFKLALS 807          
BLAST of EMLSAG00000001164 vs. C. finmarchicus
Match: gi|592832316|gb|GAXK01125228.1| (TSA: Calanus finmarchicus comp24002_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.987e+0
Identity = 24/92 (26.09%), Postives = 42/92 (45.65%), Query Frame = 0
Query:    8 SIKSYARLTLAERRVFIALP-----IAQN---DIRKSSKDNFSSGIHEVECPDIIGLCKFMLVSKSVEPSSIHTNYGPCVGKKSLFRLELSD 91
            S K  A+++LA++R     P     I Q    D R+    N  + +   E   ++G+C+ +L  + + P+   T+  P     SL   ELS+
Sbjct:  249 SNKVLAKVSLADKRALHLDPDRHRLIQQQVLLDYRRQPSQNVEAILARSE--QVMGICQGILNGEMITPTYTTTSLSPATSLPSLLEPELSN 518          
BLAST of EMLSAG00000001164 vs. C. finmarchicus
Match: gi|592832317|gb|GAXK01125227.1| (TSA: Calanus finmarchicus comp24002_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.989e+0
Identity = 24/92 (26.09%), Postives = 42/92 (45.65%), Query Frame = 0
Query:    8 SIKSYARLTLAERRVFIALP-----IAQN---DIRKSSKDNFSSGIHEVECPDIIGLCKFMLVSKSVEPSSIHTNYGPCVGKKSLFRLELSD 91
            S K  A+++LA++R     P     I Q    D R+    N  + +   E   ++G+C+ +L  + + P+   T+  P     SL   ELS+
Sbjct:  249 SNKVLAKVSLADKRALHLDPDRHRLIQQQVLLDYRRQPSQNVEAILARSE--QVMGICQGILNGEMITPTYTTTSLSPATSLPSLLEPELSN 518          
BLAST of EMLSAG00000001164 vs. L. salmonis peptides
Match: EMLSAP00000001164 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1193:6883:7256:-1 gene:EMLSAG00000001164 transcript:EMLSAT00000001164 description:"maker-LSalAtl2s1193-snap-gene-0.30")

HSP 1 Score: 229.95 bits (585), Expect = 1.017e-78
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MNKNESVSIKSYARLTLAERRVFIALPIAQNDIRKSSKDNFSSGIHEVECPDIIGLCKFMLVSKSVEPSSIHTNYGPCVGKKSLFRLELSDVFKFAMCLSADDKRGRGGKGL 112
            MNKNESVSIKSYARLTLAERRVFIALPIAQNDIRKSSKDNFSSGIHEVECPDIIGLCKFMLVSKSVEPSSIHTNYGPCVGKKSLFRLELSDVFKFAMCLSADDKRGRGGKGL
Sbjct:    1 MNKNESVSIKSYARLTLAERRVFIALPIAQNDIRKSSKDNFSSGIHEVECPDIIGLCKFMLVSKSVEPSSIHTNYGPCVGKKSLFRLELSDVFKFAMCLSADDKRGRGGKGL 112          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001164 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001164 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592881183|gb|GAXK01076718.1|2.984e-732.50TSA: Calanus finmarchicus comp99595_c0_seq1 transc... [more]
gi|592832316|gb|GAXK01125228.1|1.987e+026.09TSA: Calanus finmarchicus comp24002_c0_seq2 transc... [more]
gi|592832317|gb|GAXK01125227.1|1.989e+026.09TSA: Calanus finmarchicus comp24002_c0_seq1 transc... [more]
back to top
BLAST of EMLSAG00000001164 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011641.017e-78100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1193:6883... [more]
back to top
BLAST of EMLSAG00000001164 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001164 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001164 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001164 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1193supercontigLSalAtl2s1193:6883..7256 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1193-snap-gene-0.30
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001164 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001164EMLSAT00000001164-697011Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1193:6883..7256-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001164-683930 ID=EMLSAG00000001164-683930|Name=EMLSAG00000001164|organism=Lepeophtheirus salmonis|type=gene|length=374bp|location=Sequence derived from alignment at LSalAtl2s1193:6883..7256- (Lepeophtheirus salmonis)
ATGAATAAGAATGAATCAGTATCAATAAAATCCTATGCTAGACTCACTTT GGCCGAGCGTCGTGAGAACAGATTCGCACTTTTACGGAAAACAAAGGAGT ATTCATCGCTTTGCCCATAGCCCAAAACGATATCCGTAAAAGCTCCAAGG ACAACTTTAGCAGCGGCATTCATGAGGTTGAGTGCCCGGACATCATTGGG CTTTGTAAATTCATGCTTGTTAGCAAAAGCGTGGAACCCTCGTCCATCCA CACGAACTACGGCCCATGTGTTGGGAAGAAGAGTCTCTTTCGTCTCGAAT TGTCTGACGTATTCAAATTTGCAATGTGCCTTTCTGCTGATGACAAGCGG GGCAGAGGGGGAAAGGGATTGTAA
back to top
Add to Basket