EMLSAG00000001165, EMLSAG00000001165-683931 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001165
Unique NameEMLSAG00000001165-683931
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784049|gb|GAXK01170519.1| (TSA: Calanus finmarchicus comp175_c31_seq141 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.067e+0
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:    9 SPIISTLRSNIFTLSLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
             P +  L S I + S+    W ++    S  LE +DALF +WTS+  D
Sbjct:  473 QPRMRLLNSLILS-SVKTRIWLMKSRICSINLEREDALFMTWTSSAAD 613
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BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784062|gb|GAXK01170506.1| (TSA: Calanus finmarchicus comp175_c31_seq128 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.202e+0
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:    9 SPIISTLRSNIFTLSLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
             P +  L S I + S+    W ++    S  LE +DALF +WTS+  D
Sbjct:  473 QPRMRLLNSLILS-SVKTRIWLMKSRICSINLEREDALFMTWTSSAAD 613
[Close]
BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592780039|gb|GAXK01174529.1| (TSA: Calanus finmarchicus comp437678_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.045e+0
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 0 
Query:   10 PIISTLRSNIFTLSLHPDFWC 30
            PI+S+L  NIF LSL  + WC
Sbjct: 1670 PIVSSLLRNIFILSLF*EAWC 1732
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BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592780040|gb|GAXK01174528.1| (TSA: Calanus finmarchicus comp437678_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.051e+0
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 0 
Query:   10 PIISTLRSNIFTLSLHPDFWC 30
            PI+S+L  NIF LSL  + WC
Sbjct: 1748 PIVSSLLRNIFILSLF*EAWC 1810
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BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784230|gb|GAXK01170338.1| (TSA: Calanus finmarchicus comp175_c19_seq109 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.938e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   23 SLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
            S+    W ++    S  LE +DALF +WTS+  D
Sbjct: 1301 SVKIRIWLMKSRICSINLEREDALFMTWTSSAAD 1402
[Close]
BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784231|gb|GAXK01170337.1| (TSA: Calanus finmarchicus comp175_c19_seq108 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.942e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   23 SLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
            S+    W ++    S  LE +DALF +WTS+  D
Sbjct: 1301 SVKIRIWLMKSRICSINLEREDALFMTWTSSAAD 1402
[Close]
BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784236|gb|GAXK01170332.1| (TSA: Calanus finmarchicus comp175_c19_seq103 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.998e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   23 SLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
            S+    W ++    S  LE +DALF +WTS+  D
Sbjct: 1301 SVKIRIWLMKSRICSINLEREDALFMTWTSSAAD 1402
[Close]
BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784237|gb|GAXK01170331.1| (TSA: Calanus finmarchicus comp175_c19_seq102 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.011e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   23 SLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
            S+    W ++    S  LE +DALF +WTS+  D
Sbjct: 1301 SVKIRIWLMKSRICSINLEREDALFMTWTSSAAD 1402
[Close]
BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784239|gb|GAXK01170329.1| (TSA: Calanus finmarchicus comp175_c19_seq100 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.017e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   23 SLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
            S+    W ++    S  LE +DALF +WTS+  D
Sbjct: 1301 SVKIRIWLMKSRICSINLEREDALFMTWTSSAAD 1402
[Close]
BLAST of EMLSAG00000001165 vs. C. finmarchicus
Match: gi|592784241|gb|GAXK01170327.1| (TSA: Calanus finmarchicus comp175_c19_seq98 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.026e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:   23 SLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTD 56
            S+    W ++    S  LE +DALF +WTS+  D
Sbjct: 1301 SVKIRIWLMKSRICSINLEREDALFMTWTSSAAD 1402
[Close]
BLAST of EMLSAG00000001165 vs. L. salmonis peptides
Match: EMLSAP00000001165 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1193:7660:7908:-1 gene:EMLSAG00000001165 transcript:EMLSAT00000001165 description:"maker-LSalAtl2s1193-snap-gene-0.31")

HSP 1 Score: 139.813 bits (351), Expect = 1.184e-44
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MNNMDINSSPIISTLRSNIFTLSLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTDTFFLSNNDPFRNC 69
            MNNMDINSSPIISTLRSNIFTLSLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTDTFFLSNNDPFRNC
Sbjct:    1 MNNMDINSSPIISTLRSNIFTLSLHPDFWCVEGVEGSSFLESDDALFPSWTSTGTDTFFLSNNDPFRNC 69
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001165 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001165 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 19
Match NameE-valueIdentityDescription
gi|592784049|gb|GAXK01170519.1|1.067e+035.42TSA: Calanus finmarchicus comp175_c31_seq141 trans... [more]
gi|592784062|gb|GAXK01170506.1|1.202e+035.42TSA: Calanus finmarchicus comp175_c31_seq128 trans... [more]
gi|592780039|gb|GAXK01174529.1|2.045e+057.14TSA: Calanus finmarchicus comp437678_c1_seq2 trans... [more]
gi|592780040|gb|GAXK01174528.1|2.051e+057.14TSA: Calanus finmarchicus comp437678_c1_seq1 trans... [more]
gi|592784230|gb|GAXK01170338.1|5.938e+038.24TSA: Calanus finmarchicus comp175_c19_seq109 trans... [more]
gi|592784231|gb|GAXK01170337.1|5.942e+038.24TSA: Calanus finmarchicus comp175_c19_seq108 trans... [more]
gi|592784236|gb|GAXK01170332.1|5.998e+038.24TSA: Calanus finmarchicus comp175_c19_seq103 trans... [more]
gi|592784237|gb|GAXK01170331.1|6.011e+038.24TSA: Calanus finmarchicus comp175_c19_seq102 trans... [more]
gi|592784239|gb|GAXK01170329.1|6.017e+038.24TSA: Calanus finmarchicus comp175_c19_seq100 trans... [more]
gi|592784241|gb|GAXK01170327.1|6.026e+038.24TSA: Calanus finmarchicus comp175_c19_seq98 transc... [more]

Pages

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BLAST of EMLSAG00000001165 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011651.184e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1193:7660... [more]
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BLAST of EMLSAG00000001165 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001165 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001165 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001165 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1193supercontigLSalAtl2s1193:7660..7908 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1193-snap-gene-0.31
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001165 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001165EMLSAT00000001165-697012Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1193:7660..7908-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001165-683931 ID=EMLSAG00000001165-683931|Name=EMLSAG00000001165|organism=Lepeophtheirus salmonis|type=gene|length=249bp|location=Sequence derived from alignment at LSalAtl2s1193:7660..7908- (Lepeophtheirus salmonis)
ATGAATAATATGGATATAGTTGATTAAAATGAATAAATATACTCATTATT
TTCCCAGAATTCATCACCAATTATATCCACATTGAGGTCAAATATCTTTA
CTCTGTCCCTGCATCCAGATTTTTGGTGTGTAGAAGGAGTAGAAGGATCC
TCATTTTTAGAGTCTGATGACGCATTATTTCCTTCATGGACCTCGACGGG
CACAGACACTTTTTTCTTGAGTAATAATGACCCTTTCCGAAACTGTTGA
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