EMLSAG00000001185, EMLSAG00000001185-683951 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001185
Unique NameEMLSAG00000001185-683951
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001185 vs. C. finmarchicus
Match: gi|592842770|gb|GAXK01114774.1| (TSA: Calanus finmarchicus comp1613506_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 8.282e-4
Identity = 34/117 (29.06%), Postives = 55/117 (47.01%), Query Frame = 0 
Query:   40 LIAFDDIFQRIISGVHILKARRIED-WDHALCWRRAKEFETRTKRHNFELKQ-----KVHMVKSKGCSNNSMHCNQALR----VGRNILTSYIHYLPLSSNQLSPDGILTSFNLLID 146
            L+  + +F+ I + V + K    +D  +     RR KEF +R  R  ++ KQ     K  ++KS   +       Q L       + ILTSY+H++PL   QL P  I  +  ++ID
Sbjct:  219 LVQIEAVFRDIFAAVDVNKNFTPKDVLEEERVSRRVKEFNSRFGRTLYQTKQNFSNLKNLILKSHFSNTKPKDFEQKLVQLFISCKQILTSYLHFIPLCGGQLFPKIISDALEVIID 569
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BLAST of EMLSAG00000001185 vs. C. finmarchicus
Match: gi|592842771|gb|GAXK01114773.1| (TSA: Calanus finmarchicus comp1613506_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 1.140e-3
Identity = 34/117 (29.06%), Postives = 55/117 (47.01%), Query Frame = 0 
Query:   40 LIAFDDIFQRIISGVHILKARRIED-WDHALCWRRAKEFETRTKRHNFELKQ-----KVHMVKSKGCSNNSMHCNQALR----VGRNILTSYIHYLPLSSNQLSPDGILTSFNLLID 146
            L+  + +F+ I + V + K    +D  +     RR KEF +R  R  ++ KQ     K  ++KS   +       Q L       + ILTSY+H++PL   QL P  I  +  ++ID
Sbjct:  219 LVQIEAVFRDIFAAVDVNKNFTPKDVLEEERVSRRVKEFNSRFGRTLYQTKQNFSNLKNLILKSHFSNTKPKDFEQKLVQLFISCKQILTSYLHFIPLCGGQLFPKIISDALEVIID 569
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BLAST of EMLSAG00000001185 vs. C. finmarchicus
Match: gi|592787854|gb|GAXK01166714.1| (TSA: Calanus finmarchicus comp1193_c26_seq88 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.252e+0
Identity = 16/65 (24.62%), Postives = 36/65 (55.38%), Query Frame = 0 
Query:   58 KARRIEDWDHALCWRRAKEFETRTKRHNFELKQKVHMVKSKGCSNNSMHCNQALRVGRNILTSYI 122
            K  ++ED ++ L W+  +  +   K+   +L  + H+   +G S+N  HC++A +  R +L +++
Sbjct:  610 KMEKVEDSENGLMWKCTECTKMFKKKDKMQLHVETHL---EGFSHNCFHCDKAYKT-RGVLYTHM 792
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BLAST of EMLSAG00000001185 vs. C. finmarchicus
Match: gi|592787851|gb|GAXK01166717.1| (TSA: Calanus finmarchicus comp1193_c26_seq91 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 9.012e+0
Identity = 16/65 (24.62%), Postives = 36/65 (55.38%), Query Frame = 0 
Query:   58 KARRIEDWDHALCWRRAKEFETRTKRHNFELKQKVHMVKSKGCSNNSMHCNQALRVGRNILTSYI 122
            K  ++ED ++ L W+  +  +   K+   +L  + H+   +G S+N  HC++A +  R +L +++
Sbjct:  589 KMEKVEDSENGLMWKCTECTKMFKKKDKMQLHVETHL---EGFSHNCFHCDKAYKT-RGVLYTHM 771
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BLAST of EMLSAG00000001185 vs. L. salmonis peptides
Match: EMLSAP00000001185 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1197:125747:128100:1 gene:EMLSAG00000001185 transcript:EMLSAT00000001185 description:"augustus_masked-LSalAtl2s1197-processed-gene-0.9")

HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0 
Query:    1 MASFLENNLPSFAVVVGEEGDVVNGRQMPQKKSSYTDKRLIAFDDIFQRIISGVHILKARRIEDWDHALCWRRAKEFETRTKRHNFELKQKVHMVKSKGCSNNSMHCNQALRVGRNILTSYIHYLPLSSNQLSPDGILTSFNLLIDLFDKFEGGESLIHKIEEIKELIGKDSIDTKSKDAKKLIADLALLKFGKKPNPIKNVKSNVLLQERIQRSRSIRYGNLKNNLRSSKEDNYKQTAQISSLPQEEPSFSRSQSNNDQFSVKILLSRIAELESGIENVMVNSSSVSYIKNKNGPLSEMKDEDISKGTSSVDITDTSLKEIQSLWKPGTHMCDFLQIELCINQILDEILLELSEEMTSPTLIFDILKRELL 372
            MASFLENNLPSFAVVVGEEGDVVNGRQMPQKKSSYTDKRLIAFDDIFQRIISGVHILKARRIEDWDHALCWRRAKEFETRTKRHNFELKQKVHMVKSKGCSNNSMHCNQALRVGRNILTSYIHYLPLSSNQLSPDGILTSFNLLIDLFDKFEGGESLIHKIEEIKELIGKDSIDTKSKDAKKLIADLALLKFGKKPNPIKNVKSNVLLQERIQRSRSIRYGNLKNNLRSSKEDNYKQTAQISSLPQEEPSFSRSQSNNDQFSVKILLSRIAELESGIENVMVNSSSVSYIKNKNGPLSEMKDEDISKGTSSVDITDTSLKEIQSLWKPGTHMCDFLQIELCINQILDEILLELSEEMTSPTLIFDILKRELL
Sbjct:    1 MASFLENNLPSFAVVVGEEGDVVNGRQMPQKKSSYTDKRLIAFDDIFQRIISGVHILKARRIEDWDHALCWRRAKEFETRTKRHNFELKQKVHMVKSKGCSNNSMHCNQALRVGRNILTSYIHYLPLSSNQLSPDGILTSFNLLIDLFDKFEGGESLIHKIEEIKELIGKDSIDTKSKDAKKLIADLALLKFGKKPNPIKNVKSNVLLQERIQRSRSIRYGNLKNNLRSSKEDNYKQTAQISSLPQEEPSFSRSQSNNDQFSVKILLSRIAELESGIENVMVNSSSVSYIKNKNGPLSEMKDEDISKGTSSVDITDTSLKEIQSLWKPGTHMCDFLQIELCINQILDEILLELSEEMTSPTLIFDILKRELL 372
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001185 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001185 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592842770|gb|GAXK01114774.1|8.282e-429.06TSA: Calanus finmarchicus comp1613506_c0_seq2 tran... [more]
gi|592842771|gb|GAXK01114773.1|1.140e-329.06TSA: Calanus finmarchicus comp1613506_c0_seq1 tran... [more]
gi|592787854|gb|GAXK01166714.1|3.252e+024.62TSA: Calanus finmarchicus comp1193_c26_seq88 trans... [more]
gi|592787851|gb|GAXK01166717.1|9.012e+024.62TSA: Calanus finmarchicus comp1193_c26_seq91 trans... [more]
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BLAST of EMLSAG00000001185 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011850.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1197:1257... [more]
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BLAST of EMLSAG00000001185 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001185 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001185 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001185 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1197supercontigLSalAtl2s1197:125747..128100 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1197-processed-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001185 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001185EMLSAT00000001185-697032Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1197:125747..128100+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001185-683951 ID=EMLSAG00000001185-683951|Name=EMLSAG00000001185|organism=Lepeophtheirus salmonis|type=gene|length=2354bp|location=Sequence derived from alignment at LSalAtl2s1197:125747..128100+ (Lepeophtheirus salmonis)
AAAAAAATGCGATAGAAACATTGGAAAAGCCTTTCTATATTAATATAATA
TAATGAAAATGAAAATATTATACCTTTAATCGATATAATTTGAGGTACTT
GGATCATAGAATGACTTGATACGTCCTTTTCTTGACCTTCCCTAATCATT
TACCCTCACTTCATTTTGTAAGGTAACGTAATGATCATTGATCCTCATCT
TGGCTTTTAAAGAAAGAATGAATTTATTCAGGTTTTATCTTAATAATGAC
TAACTGAGAATGATGTTTTCTTTTTGTAGAGTTAATTTCCGAAGAAGAGC
CTCATGCCGTCCCGTGCTGAAGATATTCTCAAGGGGTTTCGCGTCAATTG
GATGAATCTAAGAGATGCGGATACGGGGAAAATCCTTTGGCAAGGGAACG
CGGATCTTTCAGTCCCAGAGGTTGAACACGAAGCTCGAGTGCCAAAAAAG
ATACTCAAATGCCGTGCCGTGTCAAGGGAAATCAATTTCTCATCTTCCGA
GCCTATGGAAAAATTTAGATTAGAACAAAAAGTGCTTTATAGGGGTCGTT
GTCTAGAGGAATGGAACTTTGACTTTGGATTCGTCATTCCAAACTCCACA
AATACTTGGCAAAGTCTAATAGAAGCTGCCCCAGAGTCACAAATGATGCC
CGCTCGAGTCCTTAATGGAAATGTTGTGATTGAGACCAAGTTCTTTGATG
ATAATTTAGAAGTGTCTACTTCTAAAGTTAGACTTTACTACGTTTAAAAA
ATAAATTAGTTTCACTCCCAACCCTACCCCAATTCACATTTATATTACAT
GTACTTATTTCCGTCCACATCCAATGGCCTCCTTCCTAGAAAATAATCTT
CCCTCTTTTGCTGTTGTTGTTGGAGAAGAGGGAGATGTCGTGAATGGACG
GCAGATGCCACAGAAAAAGTCATCTTATACCGATAAAAGGTTAATTGCAT
TTGATGATATATTTCAACGAATAATATCTGGGGTTCATATATTGAAAGCT
CGGAGGATTGAGGATTGGGATCATGCTCTTTGTTGGAGGAGAGCGAAAGA
ATTTGAAACTCGAACAAAGAGACATAATTTTGAGTTGAAGCAAAAAGTAA
GTCATTTTATTGAGTTTTTGATAAATTTTACATTATGATTGCTTTATATT
TCAGGTACATATGGTCAAGTCAAAAGGATGCTCAAATAATTCCATGCATT
GCAATCAAGCCCTTCGTGTTGGAAGAAATATATTAACATCCTATATTCAC
TACCTTCCTTTATCCTCTAACCAACTCAGTCCTGACGGGATTCTTACTTC
GTTTAATCTCTTAATTGATCTTTTTGATAAATTTGAGGGTGGAGAATCAT
TGATTCATAAAATAGAAGAGATAAAAGAGCTGATTGGAAAAGACAGTATT
GACACTAAAAGTAAGGATGCCAAAAAATTAATTGCTGATCTTGCTCTACT
CAAATTTGGAAAAAAACCAAATCCTATTAAAAATGTCAAAAGTAATGTCC
TGCTGCAGGAACGAATACAACGCTCCAGATCAATACGCTATGGGAATTTA
AAAAATAATTTACGTAGTTCCAAGGAAGATAATTATAAACAAACAGCTCA
GATATCCTCTCTGCCTCAGGAGGAACCATCCTTCAGTAGATCTCAATCAA
ATAACGATCAATTCTCGGTAAAAATTTTGCTTTCTCGCATTGCTGAACTT
GAATCTGGCATCGAGAACGTAATGGTCAACTCCAGTAGTGTTAGTTATAT
TAAAAATAAAAATGGGCCTCTTTCTGAAATGAAAGACGAGGATATTTCCA
AAGGAACCTCGTCAGTGGATATAACTGATACTTCTCTCAAGGAAATACAA
TCCCTCTGGAAGCCTGGAACCCATATGTGCGACTTTTTACAAATAGAACT
GTGCATTAATCAAATTCTAGATGAAATTTTGTTGGAGTTATCGGAAGAAA
TGACTTCACCCACGTTGATATTTGATATTCTTAAAAGAGAGCTTTTGTAA
AGGTTATTGATTTGAATTCATGTATTTTTCTTCTTCTTTCAAATAACGTC
TTTGCAATTGATTTAATTATTTCATGTTTTTTAGTATATAATTATATATA
TATGTTATATATATTCTCTACAATGATCATAGATTGATCTGTTTTGCAAG
ATTATAGTTTCAATCGACCGGTGATTCACTTATTTGACATGTATAATTTT
CCCCTCTGAATTGACTACACATCATTCTATTCTTGAAAAGAATCAATTCT
TTTCAATAAATCAGAAATTGCCAACTTTTTTTATTTATTATTAATATATT
CAGTATCTCGGGTGTACCAATGAGGTTTTGTTTTTATCTATGTTTACATC
CGCG
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