EMLSAG00000001197, EMLSAG00000001197-683963 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001197
Unique NameEMLSAG00000001197-683963
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592916192|gb|GAXK01042183.1| (TSA: Calanus finmarchicus comp1004340_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.628e-1
Identity = 16/43 (37.21%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:   20 LEHGLNYWRKN-----LIFHIRIIRDTAHKDGLSTTSSPTIKS 57
            + HG NYWR N     L+ H  ++ D  H+D L+   S T K 
Sbjct: 1058 VHHGWNYWRGNDIIILLLGHCVLVLDEVHEDKLTKDRSDTKKG 1186
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BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592777245|gb|GAXK01177323.1| (TSA: Calanus finmarchicus comp1414806_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.283e+0
Identity = 12/28 (42.86%), Postives = 14/28 (50.00%), Query Frame = 0 
Query:    5 LADSKCESLPCWTWGLEHGLNYWRKNLI 32
            L  SKC  LP   W  +HG  YW K + 
Sbjct:  500 LFTSKCHHLPHMPWNHDHGHFYWWKGVF 583
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BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592779370|gb|GAXK01175198.1| (TSA: Calanus finmarchicus comp2923_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.404e+0
Identity = 8/11 (72.73%), Postives = 8/11 (72.73%), Query Frame = 0 
Query:   12 SLPCWTWGLEH 22
            S PCWTWG  H
Sbjct:  466 SRPCWTWGSHH 498
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BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592796406|gb|GAXK01158162.1| (TSA: Calanus finmarchicus comp66904_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.947e+0
Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 0 
Query:    5 LADSKCESLPCWTWGLEHGLNYWRKNLI 32
            L  S C +LPCW   L  G+ +W    +
Sbjct: 2885 LVLSPCPTLPCWV*PLTPGMGWWLGTAV 2968
[Close]
BLAST of EMLSAG00000001197 vs. C. finmarchicus
Match: gi|592796407|gb|GAXK01158161.1| (TSA: Calanus finmarchicus comp66904_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.952e+0
Identity = 10/28 (35.71%), Postives = 14/28 (50.00%), Query Frame = 0 
Query:    5 LADSKCESLPCWTWGLEHGLNYWRKNLI 32
            L  S C +LPCW   L  G+ +W    +
Sbjct: 2933 LVLSPCPTLPCWV*PLTPGMGWWLGTAV 3016
[Close]
BLAST of EMLSAG00000001197 vs. L. salmonis peptides
Match: EMLSAP00000001197 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:497691:500108:-1 gene:EMLSAG00000001197 transcript:EMLSAT00000001197 description:"maker-LSalAtl2s119-snap-gene-5.6")

HSP 1 Score: 124.02 bits (310), Expect = 8.879e-39
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MLAPLADSKCESLPCWTWGLEHGLNYWRKNLIFHIRIIRDTAHKDGLSTTSSPTIKSVL 59
            MLAPLADSKCESLPCWTWGLEHGLNYWRKNLIFHIRIIRDTAHKDGLSTTSSPTIKSVL
Sbjct:    1 MLAPLADSKCESLPCWTWGLEHGLNYWRKNLIFHIRIIRDTAHKDGLSTTSSPTIKSVL 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001197 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001197 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592916192|gb|GAXK01042183.1|6.628e-137.21TSA: Calanus finmarchicus comp1004340_c0_seq1 tran... [more]
gi|592777245|gb|GAXK01177323.1|4.283e+042.86TSA: Calanus finmarchicus comp1414806_c0_seq1 tran... [more]
gi|592779370|gb|GAXK01175198.1|6.404e+072.73TSA: Calanus finmarchicus comp2923_c0_seq1 transcr... [more]
gi|592796406|gb|GAXK01158162.1|7.947e+035.71TSA: Calanus finmarchicus comp66904_c0_seq2 transc... [more]
gi|592796407|gb|GAXK01158161.1|7.952e+035.71TSA: Calanus finmarchicus comp66904_c0_seq1 transc... [more]
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BLAST of EMLSAG00000001197 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011978.879e-39100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s119:49769... [more]
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BLAST of EMLSAG00000001197 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001197 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001197 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001197 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s119supercontigLSalAtl2s119:497691..500108 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s119-snap-gene-5.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001197 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001197EMLSAT00000001197-697044Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s119:497691..500108-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001197-683963 ID=EMLSAG00000001197-683963|Name=EMLSAG00000001197|organism=Lepeophtheirus salmonis|type=gene|length=2418bp|location=Sequence derived from alignment at LSalAtl2s119:497691..500108- (Lepeophtheirus salmonis)
ATGTTGGCTCCCCTCGCTGACTCTAAATGTGAATCCCTTCCGTGTTGGAC
ATGGGGCTTGGAACATGGACTCAACTATTGGAGGAAGAATCTCATTTTTC
ATATGTAAGTCCCTCTTTTTTTTTCACGTTTCTTGCCCTTCTTTTATTAT
TAGATAGATAGCCTTGATGTTTGCTTGCCTTTTTATGAAAACAAGTTTTC
GTGAAATAAAGAACACTTTACTTCCAACAGTAGTGACTACAATATTTTTA
TTCTTCATAAATGTGTCATGACACTTTTTTAAAACTATGTTAATAGTGCA
TTGTGCCTTTGCCGTCTGCCCCTTCCTCTCATTAGCATTTCCTTCCGTAA
TATTTAGCCACACCCATTATTTTATGCTGATAAATTCATGTATAAATGAT
GACTCACATTCCACCATTTTTGTGGAATGTTTTTACATTAGTTTTTAGCT
AAGTTTCAAGATGAAGAAGAAAAAGGTTGTGTGAAGGTCACCCTAAGAAC
AGGAGGAGGACGGACATTTTTATATACATACTATTTTCTTTTATTTAGAA
ATGTTTCTCGGGGAGGAGGGAGATGAAATTTCCATTTTATTTTTTAAATG
ATAATGCCATGTTTTTTTCACAAKTKKTTTTTTTTTTTTAATTTTTCCTC
TTATTAAATGATGATGTTTGACACGTCAGATTGTTGGCTGGTCTGTTTGG
GGAAATAAAGCCTTTTTAAGATTTCATTTGGKGCTGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCT
CTCTCCCTTCCTCTCTGCAGCCGAGCAAGTAACAACCTGAGGAGCGGAGC
ACTTGTGTGAGTGAGTGACTAAGTGAACTATTTCCATTCTCTTATGAATG
ATGGTGTGCCTGTGTCAGTATATCAATGTGTTAACGTTACTTCTTCTTGT
GTAACCCCATCCATAAGAGATTCCAAGCAGAACAATCCTGTATTCATGTA
TAAACAGAGAAGGAAATAATCACTGTGCATGAAATAAATAAATAAAACCA
TATGCGCCWAGGACAGGCAAACTAAAAGGGGGTCCATTCATAGACAGGTA
TCACTAATAAAGGCGGAAGGAAGTAACTATTGACTGTGTAGTGGGGATGA
GGATTCCCACTTTTTTCAGCCATTTTTCCTTTTATTTAAACGCGTAGTTT
CCCAATTTTTCAAAAGTTTTTAGATATATTATGAAATGACGGAACCTAAT
GTTTGTGCAGTCTCACTCAACCTCATTCACTCTCTTTTTCGTCATTATTA
CTACTTTAAGTTATCGTTCATTACATTAATTGCATCAAGTCGTCCTTCTT
TATTTCTCCGTTATTCCTTATCATTCAATTTTGCTGCATATGTGAAAATG
ACGTTATATGATGAATAGCTAGAAGAAGGCGACAATGATAGGAAGGAAAT
AGTGTGCGTCACTTTTTGGGAGAGTTTATATATTTTTTCCTCTTCACACC
CACCCACTCTTAGTTAATATATTTGATGTTAGCTATTATTATGTGGAGCC
AACGCAGTATTTTTTATTATTGCACTATTCATCATACAACTTATTAATTG
AAACAGATTTATTTACCACATTGATATTTGACACAGAATGTTCACAGCTG
TGTGCACTAATGATAATTATTTGTAAAAACAAATGATTGGCCAAAGACAC
GTTTTAGAAGGATTTTTTTTCGTAGAAAATTGCCTATACATGATTTCCTC
CACGCAGACAGACTGAATAATATGATATGATGGTTAACATTAATATAATG
TACTGTTTTATCTGTGACTCTCCTGAATGAGCAGACAATACATACGAGAA
CATTTATTTATTGGAGTGAGTCCAACTCCTCATGGCTTTGAATAAGTATT
TCTGTAACTTGATTCTTTCCTTCCCCCCCCCCCCCTCTTTCTACTGCATA
TTTTTGTAAATTTGTCAAATTTCAACTATCAATTCCTTTCCATTATAGTA
TGTCCGAATACAATTAGATTGAGTTTTCTATGAAAACTCAATCTAATTGT
ATTCGAATCTCTATTTATTTTTCCTTTTAGCATTAAATATGTTATGAATT
ACTTCTATCTCGCTAGCTTTCCATGAAATTATAATATGATTGTGTATACT
TCGTTCACCTTAGTGAATATTATACTATTTTAAAATCGTATTATGATTCT
GAATCATTCATTATACAAATGTACTTTCTATTATTTTTACAGAAGGATCA
TTAGGGATACTGCGCACAAGGATGGATTGTCAACTACTTCTTCTCCAACC
ATTAAGTCAGTGCTATAG
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