EMLSAG00000001218, EMLSAG00000001218-683984 (gene) Lepeophtheirus salmonis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001218 vs. L. salmonis peptides
Match: EMLSAP00000001218 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:21782:22338:-1 gene:EMLSAG00000001218 transcript:EMLSAT00000001218 description:"maker-LSalAtl2s11-augustus-gene-0.14") HSP 1 Score: 323.168 bits (827), Expect = 8.812e-114 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query: 1 MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKSSNRFPNNQIVTSYSRS 166
MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKSSNRFPNNQIVTSYSRS
Sbjct: 1 MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKSSNRFPNNQIVTSYSRS 166
BLAST of EMLSAG00000001218 vs. L. salmonis peptides
Match: EMLSAP00000001230 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:54372:55068:1 gene:EMLSAG00000001230 transcript:EMLSAT00000001230 description:"augustus_masked-LSalAtl2s11-processed-gene-0.1") HSP 1 Score: 171.4 bits (433), Expect = 4.699e-54 Identity = 111/171 (64.91%), Postives = 131/171 (76.61%), Query Frame = 0
Query: 1 MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVP--------YPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKSSNRFPNNQIVTSY 163
MKILIVLG LL SSL SGY+H L+SYP PFYPSH TPQSEFYTSRH SN++ + HQFHQSNSHPVP +P YPVPIQTST PII+ TPVPVF+TP+SLFNSQR+ FS SS+ GTN+ + QFGN+ L GKV S S T TP+R DN SS++FPN+QI++ Y
Sbjct: 1 MKILIVLGFLLDSSLGSGYRHHLNSYPSPFYPSHLTPQSEFYTSRHPFLHSNNHLMLHQFHQSNSHPVPQTFHHSNSHPFLYPVPIQTSTPKPIIVVTPVPVFVTPDSLFNSQRETFSSSSSNSGTNLNNGQFGNNLLNGKVHSTSFTPTPSRFDNNSSDQFPNDQILSPY 171
BLAST of EMLSAG00000001218 vs. L. salmonis peptides
Match: EMLSAP00000000727 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:12706:13290:1 gene:EMLSAG00000000727 transcript:EMLSAT00000000727 description:"augustus_masked-LSalAtl2s1116-processed-gene-0.2") HSP 1 Score: 140.584 bits (353), Expect = 2.544e-42 Identity = 94/164 (57.32%), Postives = 114/164 (69.51%), Query Frame = 0
Query: 1 MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKSSNRFPNNQIVTSYS 164
MKIL++LG LLGSS S YQHPLHSYP P +P H TP S+F+ SR F SNSH PVPYP PIQTST PI++ TPVPVF++P+S+FNS RDIFS S+ GTN QFGN+FL GKVQS SST +P+R +N SN+ PNN+I++SYS
Sbjct: 1 MKILMILGFLLGSSFGSQYQHPLHSYPSPVFPYHLTPPSQFFASR------------QPFLHSNSH----PVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSHRDIFSS-DSNTGTNFNKGQFGNNFLNGKVQSTSSTSSPSRFNNPFSNQSPNNKIISSYS 147
BLAST of EMLSAG00000001218 vs. L. salmonis peptides
Match: EMLSAP00000001219 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:2555:3002:-1 gene:EMLSAG00000001219 transcript:EMLSAT00000001219 description:"maker-LSalAtl2s11-augustus-gene-0.13") HSP 1 Score: 128.642 bits (322), Expect = 5.369e-38 Identity = 87/150 (58.00%), Postives = 100/150 (66.67%), Query Frame = 0
Query: 1 MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQFGNSFLIGKVQSXSSTRTPTRLDNKS 150
MKIL++LGLLLGS+ AS YQHPL YP PFYPS QS+FY S+ F +SNSHPV YP P QTST PII+ATP+PVF+TP+SLFNSQRD FS GS+ QFGN+FL GKVQS S TRTP+R DN S
Sbjct: 1 MKILMILGLLLGSTFASEYQHPLLPYPSPFYPS----QSQFYASQQ------------PFFRSNSHPVLYPFP----TQTSTPRPIIVATPIPVFVTPDSLFNSQRDTFSSGSNTGNNFNNEGQFGNNFLNGKVQSTSFTRTPSRFDNHS 130
BLAST of EMLSAG00000001218 vs. L. salmonis peptides
Match: EMLSAP00000000728 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1116:7767:8695:1 gene:EMLSAG00000000728 transcript:EMLSAT00000000728 description:"maker-LSalAtl2s1116-snap-gene-0.9") HSP 1 Score: 102.449 bits (254), Expect = 5.143e-28 Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 0
Query: 1 MKILIVLGLLLGSSLASGYQHPLHSYPGPFYPSHFTPQSEFYTSRHLLPQSNSYPVPHQFHQSNSHPVPYPVPYPVPIQTSTSVPIIIATPVPVFITPNSLFNSQRDIFSKGSSDIGTNIKSAQ 124
MKIL++LG +LGSS S YQHPLHSYP P +P H S+FY SR QFH NSH PVPYP PIQTST PI++ TPVPVF++P+S+FNSQRD FS +S G N + Q
Sbjct: 1 MKILMILGFILGSSFGSQYQHPLHSYPSPVFPYHLGSPSQFYASR------------QQFHHFNSH----PVPYPFPIQTSTPGPIVVVTPVPVFLSPDSIFNSQRDTFSS-NSKTGNNFNNGQ 107 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001218 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001218 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 0
BLAST of EMLSAG00000001218 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000001218 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001218 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001218 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001218 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s11:21782..22338- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001218-683984 ID=EMLSAG00000001218-683984|Name=EMLSAG00000001218|organism=Lepeophtheirus salmonis|type=gene|length=557bp|location=Sequence derived from alignment at LSalAtl2s11:21782..22338- (Lepeophtheirus salmonis)back to top Add to Basket
|