EMLSAG00000001220, EMLSAG00000001220-683986 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001220
Unique NameEMLSAG00000001220-683986
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930610|gb|GAXK01027935.1| (TSA: Calanus finmarchicus comp301033_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.403e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3032 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3175          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930625|gb|GAXK01027928.1| (TSA: Calanus finmarchicus comp301033_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.407e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3032 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3175          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930609|gb|GAXK01027936.1| (TSA: Calanus finmarchicus comp301033_c2_seq9 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.416e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3032 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3175          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930616|gb|GAXK01027929.1| (TSA: Calanus finmarchicus comp301033_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.419e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3032 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3175          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930601|gb|GAXK01027944.1| (TSA: Calanus finmarchicus comp301033_c2_seq17 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.641e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3008 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3151          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930603|gb|GAXK01027942.1| (TSA: Calanus finmarchicus comp301033_c2_seq15 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.641e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3008 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3151          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930605|gb|GAXK01027940.1| (TSA: Calanus finmarchicus comp301033_c2_seq13 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.641e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3032 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3175          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592930606|gb|GAXK01027939.1| (TSA: Calanus finmarchicus comp301033_c2_seq12 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.642e+0
Identity = 16/48 (33.33%), Postives = 24/48 (50.00%), Query Frame = 0
Query:   20 NERNHVNFQEFHNISTKTHLCIRLSKSFADSQI---PRYKISSEFTIP 64
            N+RN    ++ + I  KT LC       +DS I   P Y+I  + T+P
Sbjct: 3032 NDRNSAEMKKENKIENKTQLCESSQDPKSDSSIVEDPYYQIVKQQTLP 3175          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592829421|gb|GAXK01128123.1| (TSA: Calanus finmarchicus comp1773118_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.061e+0
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 0
Query:   15 RRSTTNERNHVNFQEFHNISTKTHLCIRL 43
            RR T  E NHV  ++FHN  T+ H+CIRL
Sbjct:  532 RRKTVAE-NHV--RKFHNHVTRIHVCIRL 609          
BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592879861|gb|GAXK01078040.1| (TSA: Calanus finmarchicus comp3136856_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.905e+0
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = 0
Query:   11 PRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLS 44
            PRK   +T+   N +N   FH I++  +LC  LS
Sbjct:  168 PRKAYFTTSKTHNILNIIAFHGITSWLNLCRGLS 269          
BLAST of EMLSAG00000001220 vs. L. salmonis peptides
Match: EMLSAP00000001220 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:343021:345433:-1 gene:EMLSAG00000001220 transcript:EMLSAT00000001220 description:"snap_masked-LSalAtl2s11-processed-gene-3.6")

HSP 1 Score: 133.265 bits (334), Expect = 3.048e-42
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
Query:    1 MFPNAYLTFNPRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLSKSFADSQIPRYKISSEFTIP 64
            MFPNAYLTFNPRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLSKSFADSQIPRYKISSEFTIP
Sbjct:    1 MFPNAYLTFNPRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLSKSFADSQIPRYKISSEFTIP 64          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001220 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592930610|gb|GAXK01027935.1|1.403e+033.33TSA: Calanus finmarchicus comp301033_c2_seq8 trans... [more]
gi|592930625|gb|GAXK01027928.1|1.407e+033.33TSA: Calanus finmarchicus comp301033_c2_seq1 trans... [more]
gi|592930609|gb|GAXK01027936.1|1.416e+033.33TSA: Calanus finmarchicus comp301033_c2_seq9 trans... [more]
gi|592930616|gb|GAXK01027929.1|1.419e+033.33TSA: Calanus finmarchicus comp301033_c2_seq2 trans... [more]
gi|592930601|gb|GAXK01027944.1|1.641e+033.33TSA: Calanus finmarchicus comp301033_c2_seq17 tran... [more]
gi|592930603|gb|GAXK01027942.1|1.641e+033.33TSA: Calanus finmarchicus comp301033_c2_seq15 tran... [more]
gi|592930605|gb|GAXK01027940.1|1.641e+033.33TSA: Calanus finmarchicus comp301033_c2_seq13 tran... [more]
gi|592930606|gb|GAXK01027939.1|1.642e+033.33TSA: Calanus finmarchicus comp301033_c2_seq12 tran... [more]
gi|592829421|gb|GAXK01128123.1|2.061e+055.17TSA: Calanus finmarchicus comp1773118_c0_seq1 tran... [more]
gi|592879861|gb|GAXK01078040.1|6.905e+038.24TSA: Calanus finmarchicus comp3136856_c0_seq1 tran... [more]

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BLAST of EMLSAG00000001220 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012203.048e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11:343021... [more]
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BLAST of EMLSAG00000001220 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11supercontigLSalAtl2s11:343021..345433 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s11-processed-gene-3.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001220 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001220EMLSAT00000001220-697067Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11:343021..345433-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001220-683986 ID=EMLSAG00000001220-683986|Name=EMLSAG00000001220|organism=Lepeophtheirus salmonis|type=gene|length=2413bp|location=Sequence derived from alignment at LSalAtl2s11:343021..345433- (Lepeophtheirus salmonis)
ATGTTTCCTAATGCATATTTAACGTTCAATCCTCGAAAAATGAGAAGATC TACAACGAATGAGAGGAATCACGTCAATTTTCAAGGTAAGAACAAAATGA TAAGATAATGATGACATAAAAAATAACAGAAATTATAATATCATAATAAT GATAAAAGACAAAAAATCGTCAAATGAGATCAAGATTTCTAATTTCGAAA TATTTCATCCATTAAATAAATAACGTAATTTCGAAATCATTTGTTTTTTT ATAAGTAGTTGGCTAAAGAGGTCATTTCAGTGTTAAAGGATTTTGCGTTT ATTTTTTTCCTGGTTATTATTTTATATTACTACTATGTCTTCATTTTTAA GAATTTCATAATATATCAACAAAAACTCACTTGGTATGTACCAACATATC ATTGGAAGAGGAAAGGCCTGTTTCAAAATAAAATCGGGAGAAACCGGTGT TATAAGAGACTCTATGATATAAATATGAAGTTTAATATTGTATCTCTGAT TTGCAAAACTTTTTGATTACAAATGTCCGTTTTCTAATTGGATAATTATG ATTGATTCGTAGCAAAATTACTTAGTCAATCGTTGATAAAGGCCAGTTTA TCTCTTATCAGACAATTATAATCAGAACCGCCTTAGACTAATGATAGACC ACAAGGCTGAGAAGATTTGATGGCTCTAACAGGTTATACATTGCAAAAAT ACACATTTTTAGCTCACTAGTGGGTTCTTAAACTTGGTAGACCCCTGCGC TTCAGCCCAGGTTAGTTTTTTTTATTAAAACAGTCCTGAGGATAATGCAA GAGCAATTCAGCTTCTCCTAGCTTACGAATTAGGAGCTTGTCACTCTAAC AAATCCACTATACCTTTTTTTCTAGTCTGAAGTTAATTTTTTTTGTAATG TACCTAAATACAAATTAAAATCTTCCCTAAAGTAGTGGAGCTTCCTGTAA TTATATAATGGTACTTTGATAACTGTGTTAACCGGGGTTTGACATTTTTA ACTTTGATTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATA CTTACAGTGTATTCGTTTAAGTAAGTCGTTTGCGGACTCTCAAATTCCTC GTTACAAGATCGTAAAATATAAAGAAAAAAATAAATAAGGAATATGTCAA AAGAGAGAAAATACTCACATAAATTTGTTACTTGTAAATTTTCCTGTCAA AAAATATGAAATAATGGTTTTAAAATTTCATTAATGAAAGTTTTTTTTCT TTTAAAAAAAATAAAATCAATTAACTTTTCCCATATCTTGAAAGATTTTC ATTACTCTACAAGAATGAATAATGAGGCCTTTATCCCCAAGTGAATTACG AATCGGAAATTAGTATTTTTGTATCAAATTTGGTTTCCAAGCATTTCCAA TCTTAATGAATTAAGTATTTTTACGCTTATAAAAGGTTTGAGCCAATTTT TGAGTTAGTAAAAATTGCTCCTTAATTTACCCTTTTAATAAAAAGGTTTC TTTTGAGCATGAAACATATATTACTTTCGTTTGAAATGAGATCATTTTAC TTTAAAACAGATGAAAAAACAATGATTTTATTAAATATCTGCAGAAAAAA ATAACGAAAATGAGTTTTTTTCACCTTTACACTCCGTTTTTTTTCTTGAT TGAATTGTCTCACTTTAGATGTAACCGTCTTTCTGAAGTTAACTATACAT TATAGATGAAATAGTTTAATTTCATGCAGATTGAAGAACTTTTTTCGAAC TCAAAAGTGAAGACGTCATACGCTGGTCTCTATTATTTTTTTGAATAAAT TGATTTAAGACGAAAATATATTTTTATATTTTAGCTAAGTCCTCAGAATT TACCATACCTTAG
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