EMLSAG00000001244, EMLSAG00000001244-684010 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001244
Unique NameEMLSAG00000001244-684010
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001244 vs. L. salmonis peptides
Match: EMLSAP00000001244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1202:113759:115209:-1 gene:EMLSAG00000001244 transcript:EMLSAT00000001244 description:"snap_masked-LSalAtl2s1202-processed-gene-0.26")

HSP 1 Score: 159.073 bits (401), Expect = 9.969e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 
Query:    1 MLGMTSDILSATPASVNVLRCLTAFILLSLGILVKTLLTIGLGETIGLFKKEPLMDMVTSLLKDREFVIVSGVFINICLRGE 82
            MLGMTSDILSATPASVNVLRCLTAFILLSLGILVKTLLTIGLGETIGLFKKEPLMDMVTSLLKDREFVIVSGVFINICLRGE
Sbjct:    1 MLGMTSDILSATPASVNVLRCLTAFILLSLGILVKTLLTIGLGETIGLFKKEPLMDMVTSLLKDREFVIVSGVFINICLRGE 82
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001244 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001244 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001244 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012449.969e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1202:1137... [more]
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BLAST of EMLSAG00000001244 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001244 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001244 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001244 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1202supercontigLSalAtl2s1202:113759..115209 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
NoteHypothetical protein
Descriptionsnap_masked-LSalAtl2s1202-processed-gene-0.26
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001244 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001244EMLSAT00000001244-697091Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1202:113759..115209-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001244-684010 ID=EMLSAG00000001244-684010|Name=EMLSAG00000001244|organism=Lepeophtheirus salmonis|type=gene|length=1451bp|location=Sequence derived from alignment at LSalAtl2s1202:113759..115209- (Lepeophtheirus salmonis)
ATGTTGGGCATGACAAGTGACATACTCAGCGCCACTCCAGCATCCGTCAA
TGTTCTTCGATGTCTTACTGCATTTATTTTACTTTCTCTAGGAATCTTGG
TCAAAACCCTTCTTACGATTGGATTAGGGGAAACTATTGGGCTTTTTAAG
AAGGAGCCCCTAATGGATATGGTTACTTCTTTACTGAAGGACAGGGAATT
TGTAATAGGTTCAATAAAAGGAGCTGTTTTCAGCTCTATTTTTCAGGTAT
AAGCTATTTGAGAAAATAATTCATTATTTAACTATTTTCCTTCTCCAATA
TTCAAGATTAATTTTTCCATCTCATAAGACTCATTTTTGAAAGCGTAAGT
AAGATAAGGAGTACTTTATAAATGGATTGCGCATTATATTTTCCTTTTTT
TTAACCAACTAAAGGCTATATCTTGTATTTTTTTATTAGTAGAATAATTA
TGAAATGAAAAATATAATGTAATAAAATAATTATGTAATTATAGTCATTA
GGAAATGTTTCTAATTATTTTCTAATAACATTAAATATGTAGATCAACCA
AAAATATTCTATTAATTCCTTATGGCATTTATTAGACAATTGTTTGAATT
CCATTTTTTCTTTCATTTCATCACTATTCTTGTATTCCTTGAATTGACTA
GAAATAGTTGTAAATTTTATGACCTAACCGGTCAAGAAATAAACCGAAAA
ATCAACATAGTAACCATGATAATTTAACAATTGCTTCGAAGGGAAACAGC
TTAGCTTCCATGACGTTTCATCAGATTAGCTGTTAGCAAGTTTAAGAGAA
AGGAGATAAACACAAGTCCACTCCGTATCTTACAAGGAATTACTCTGGTA
TCGATCCTCAATTCGTCCAACAAAGACGTAGTACACTCATAACGCCCAAC
AAATCCTCTGTGTTACTCGCTAACACAGATATATAAACTTTATTTTGTTA
TCACCTGTCGATTTTTCTGCTGCTTTTTCCTTATTAGTGTTCTAAACGTT
AATTGGTTGGAATATAATTAGTTTTTATTAGGCTGTGAACACTTTTCAAC
AATTATTCAATAGTTGGGAATAATTGTTTAGCTACCAATTGATTTTGGGC
CTTTTTCAGTTTATTTTAGRATGAAAGGTTGCGTGATATTTGAAAGCAGC
TTTTGAAAATAAAAGGTGCAACTTCCAAAAGTGTCTAAGCTCAATTTTTT
TACAACTCTAAATATACCCATTGTAAAATATTTTTCCTAGCCTTATCTTT
GGACTTAACAGTAGTGATAGACTATGAGATGGAATTTGTAATTAGAATTG
GAGAATTCATTAAATTTTTCTACCAATTAACAAACTTCATAAAATCATGA
TCATAACATACATATACTAGCAGGGATTACCTAATTAATCATTCTTTTCG
TTTTGTTTAGTTAGTGGTGTTTTCATTAATATATGTCTTCGTGGTGAATA
A
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