EMLSAG00000001259, EMLSAG00000001259-684025 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001259
Unique NameEMLSAG00000001259-684025
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001259 vs. C. finmarchicus
Match: gi|592830070|gb|GAXK01127474.1| (TSA: Calanus finmarchicus comp1029510_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.670e+0
Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 0 
Query:   58 YYYQQKIVSALMKGRIRRGKTIGPPYQKMDSQLEDYP 94
            + YQQ+++  L+     +  ++ PP QK+ SQL+  P
Sbjct:  629 FCYQQQLLVCLLPLHFEQDPSVLPPLQKIVSQLQSRP 739
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BLAST of EMLSAG00000001259 vs. L. salmonis peptides
Match: EMLSAP00000001259 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1206:15499:16283:1 gene:EMLSAG00000001259 transcript:EMLSAT00000001259 description:"maker-LSalAtl2s1206-augustus-gene-0.16")

HSP 1 Score: 221.861 bits (564), Expect = 1.233e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MKIMPGFDVSNQHHRMIAAPLDWFKLHDKSIEDLVRTYXLVSYIIVALIVLIVLCMFYYYQQKIVSALMKGRIRRGKTIGPPYQKMDSQLEDYPNEIIPSWRFKDLFI 108
            MKIMPGFDVSNQHHRMIAAPLDWFKLHDKSIEDLVRTYXLVSYIIVALIVLIVLCMFYYYQQKIVSALMKGRIRRGKTIGPPYQKMDSQLEDYPNEIIPSWRFKDLFI
Sbjct:    1 MKIMPGFDVSNQHHRMIAAPLDWFKLHDKSIEDLVRTYXLVSYIIVALIVLIVLCMFYYYQQKIVSALMKGRIRRGKTIGPPYQKMDSQLEDYPNEIIPSWRFKDLFI 108
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001259 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001259 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592830070|gb|GAXK01127474.1|5.670e+032.43TSA: Calanus finmarchicus comp1029510_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001259 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012591.233e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1206:1549... [more]
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BLAST of EMLSAG00000001259 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001259 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001259 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001259 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1206supercontigLSalAtl2s1206:15499..16283 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1206-augustus-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001259 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001259EMLSAT00000001259-697106Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1206:15499..16283+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001259-684025 ID=EMLSAG00000001259-684025|Name=EMLSAG00000001259|organism=Lepeophtheirus salmonis|type=gene|length=785bp|location=Sequence derived from alignment at LSalAtl2s1206:15499..16283+ (Lepeophtheirus salmonis)
TTCTGGAGGCACTGTCAGATAGAGTTAATTATTTTCCGCAAAGTTTCATT
CAATAGATAATAATTATTATAACAATTGTTGCGTATGATTATGTCACTTG
CTTTAATGATATAATATTCGAATCACACATACATATCTTACGTGTACATA
ATGCATATAATGGTAGCAAACAAATTAGTTTCTCTCCAGTAACTCACATC
TCCAGTATCCAATCAATTCAAGTTTCATCGAAGATAAATGTGTAAATTTT
TAAATATAAATACAAAATCTTGACCATGAAAATAATGCCTGGATTTGATG
TGTCCAATCAGCATCATCGAATGATTGCTGCGCCTCTAGATTGGTTTAAA
CTTCATGATAAATCTATAGAAGATCTTGTTCGAACTTATMCTCTAGTATC
CTATATTATAGTGGCCTTGATTGTCCTTATTGTATTATGTATGTTTTACT
ATTATCAACAAAAGGTAAGTTTATACAATTAAATAATCTTAGTTAATTAA
AAACATTATATCATTCTAGATAGTTTCGGCACTCATGAAAGGTCGTATAC
GGCGTGGTAAAACGATTGGACCCCCATACCAAAAAATGGATAGTCAATTG
GAGGATTATCCAAATGAGATTATTCCTAGTTGGAGATTTAAAGATTTATT
TATCTAGATATTTATTTCCAGTTGTATTGTTTAGTTTCCATATCATTAGA
CCAAAAAATATATAAATTTTATATCTAAGAATGTATTTAGTTTTTTTATT
ATATCCTATGATTACTTTCGTTTCAATCCCAACTC
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