EMLSAG00000001263, EMLSAG00000001263-684029 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001263
Unique NameEMLSAG00000001263-684029
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592898051|gb|GAXK01060324.1| (TSA: Calanus finmarchicus comp3093919_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.3654 bits (111), Expect = 1.025e-7
Identity = 20/35 (57.14%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDDD 35
            + +IPKVTRC+AM+AK+A+  EF+DL IE+P D++
Sbjct:  137 LGDIPKVTRCLAMMAKLANIREFEDLCIELPEDEN 241          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592805767|gb|GAXK01148801.1| (TSA: Calanus finmarchicus comp742873_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 7.655e-5
Identity = 16/34 (47.06%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDD 34
            + +IPKVTRC+A++AK+A+  EF+D+ ++I  +D
Sbjct:   51 LGDIPKVTRCLAIMAKMANVKEFEDVIVDILEED 152          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592805770|gb|GAXK01148798.1| (TSA: Calanus finmarchicus comp742873_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.722e-4
Identity = 16/34 (47.06%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDD 34
            + +IPKVTRC+A++AK+A+  EF+D+ ++I  +D
Sbjct:   51 LGDIPKVTRCLAIMAKMANVKEFEDVIVDILEED 152          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592805768|gb|GAXK01148800.1| (TSA: Calanus finmarchicus comp742873_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.792e-4
Identity = 16/34 (47.06%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDD 34
            + +IPKVTRC+A++AK+A+  EF+D+ ++I  +D
Sbjct:   51 LGDIPKVTRCLAIMAKMANVKEFEDVIVDILEED 152          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592805769|gb|GAXK01148799.1| (TSA: Calanus finmarchicus comp742873_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 1.955e-4
Identity = 16/34 (47.06%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDD 34
            + +IPKVTRC+A++AK+A+  EF+D+ ++I  +D
Sbjct:   51 LGDIPKVTRCLAIMAKMANVKEFEDVIVDILEED 152          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592754825|gb|GAXK01199588.1| (TSA: Calanus finmarchicus comp181122_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.385e-1
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIA 18
            +KNIPKVT+C+A L+K+A
Sbjct:  736 LKNIPKVTKCLAQLSKLA 789          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592754824|gb|GAXK01199589.1| (TSA: Calanus finmarchicus comp181122_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.434e-1
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIA 18
            +KNIPKVT+C+A L+K+A
Sbjct:  643 LKNIPKVTKCLAQLSKLA 696          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592954073|gb|GAXK01004480.1| (TSA: Calanus finmarchicus comp3063598_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.082e+0
Identity = 17/42 (40.48%), Postives = 24/42 (57.14%), Query Frame = 0
Query:    2 KNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDDDLFKSSDDE 43
            +++P  TRCIAM   IA  P  D+LN+    + +L    DDE
Sbjct:   73 ESVPLNTRCIAMFNFIAENP--DELNMIDQEELELIGEGDDE 192          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592840656|gb|GAXK01116888.1| (TSA: Calanus finmarchicus comp490031_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 6.939e+0
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 0
Query:    2 KNIPKVTRCIAMLAKIA 18
            KNIPKVTRC+A    +A
Sbjct:  164 KNIPKVTRCLASCVDLA 214          
BLAST of EMLSAG00000001263 vs. C. finmarchicus
Match: gi|592840657|gb|GAXK01116887.1| (TSA: Calanus finmarchicus comp490031_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 7.155e+0
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 0
Query:    2 KNIPKVTRCIAMLAKIA 18
            KNIPKVTRC+A    +A
Sbjct:  284 KNIPKVTRCLASCVDLA 334          
BLAST of EMLSAG00000001263 vs. L. salmonis peptides
Match: EMLSAP00000001263 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1206:30489:30740:-1 gene:EMLSAG00000001263 transcript:EMLSAT00000001263 description:"maker-LSalAtl2s1206-snap-gene-0.27")

HSP 1 Score: 91.6633 bits (226), Expect = 1.953e-26
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0
Query:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDDDLFKSSDDECD 45
            MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDDDLFKSSDDECD
Sbjct:    1 MKNIPKVTRCIAMLAKIAHAPEFDDLNIEIPSDDDLFKSSDDECD 45          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001263 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001263 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592898051|gb|GAXK01060324.1|1.025e-757.14TSA: Calanus finmarchicus comp3093919_c0_seq1 tran... [more]
gi|592805767|gb|GAXK01148801.1|7.655e-547.06TSA: Calanus finmarchicus comp742873_c0_seq4 trans... [more]
gi|592805770|gb|GAXK01148798.1|1.722e-447.06TSA: Calanus finmarchicus comp742873_c0_seq1 trans... [more]
gi|592805768|gb|GAXK01148800.1|1.792e-447.06TSA: Calanus finmarchicus comp742873_c0_seq3 trans... [more]
gi|592805769|gb|GAXK01148799.1|1.955e-447.06TSA: Calanus finmarchicus comp742873_c0_seq2 trans... [more]
gi|592754825|gb|GAXK01199588.1|1.385e-166.67TSA: Calanus finmarchicus comp181122_c0_seq1 trans... [more]
gi|592754824|gb|GAXK01199589.1|2.434e-166.67TSA: Calanus finmarchicus comp181122_c0_seq2 trans... [more]
gi|592954073|gb|GAXK01004480.1|1.082e+040.48TSA: Calanus finmarchicus comp3063598_c0_seq1 tran... [more]
gi|592840656|gb|GAXK01116888.1|6.939e+064.71TSA: Calanus finmarchicus comp490031_c0_seq2 trans... [more]
gi|592840657|gb|GAXK01116887.1|7.155e+064.71TSA: Calanus finmarchicus comp490031_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001263 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012631.953e-26100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1206:3048... [more]
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BLAST of EMLSAG00000001263 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001263 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001263 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001263 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1206supercontigLSalAtl2s1206:30489..30740 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1206-snap-gene-0.27
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001263 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001263EMLSAT00000001263-697110Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1206:30489..30740-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001263-684029 ID=EMLSAG00000001263-684029|Name=EMLSAG00000001263|organism=Lepeophtheirus salmonis|type=gene|length=252bp|location=Sequence derived from alignment at LSalAtl2s1206:30489..30740- (Lepeophtheirus salmonis)
TACGGGGTTCCTGAAGAGTACCTATTCAAGCCAGAGGAACTCCTTGAAAT GAAAAATATTCCCAAGGTCACCAGATGTATTGCCATGCTAGCAAAAATTG TAAGATTTATTAGATAATTGTTTTACATATTAGGTACTCATAAATACTCA TATTTTGATATCTAGGCCCATGCACCCGAATTTGATGATTTGAACATTGA AATTCCTTCAGATGATGATTTATTCAAAAGTTCAGATGATGAATGCGACT AA
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