EMLSAG00000001268, EMLSAG00000001268-684034 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001268
Unique NameEMLSAG00000001268-684034
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001268 vs. L. salmonis peptides
Match: EMLSAP00000001268 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1209:52377:57511:-1 gene:EMLSAG00000001268 transcript:EMLSAT00000001268 description:"augustus_masked-LSalAtl2s1209-processed-gene-0.1")

HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MSNIDNYPDFEDYQDPLTVETYEVTTRDLILFSIRIAVCLIFLVCTFYVLISGLFLHKYIKNWKLCLVTCGALSAWLGLSVYSDHIDEYWAGGFVIHYQTRNSIFQWFLNLFHGLTLFLTLLLLGHLADFQKRGCWLFLVALTIIVPIIYSVVIILVDLYAKKRFAGRKWSAFVVLFRTGIYNVLNTLLLLSFLPRFCTSRLYGTYDEKRSSSVILISRWIFMFLLLHNLTDIAWGVIIALRFFLEDVINDTDFVLIQDIFDEVKFVLIVLAIPFSYAVSLAVKAVV 287
            MSNIDNYPDFEDYQDPLTVETYEVTTRDLILFSIRIAVCLIFLVCTFYVLISGLFLHKYIKNWKLCLVTCGALSAWLGLSVYSDHIDEYWAGGFVIHYQTRNSIFQWFLNLFHGLTLFLTLLLLGHLADFQKRGCWLFLVALTIIVPIIYSVVIILVDLYAKKRFAGRKWSAFVVLFRTGIYNVLNTLLLLSFLPRFCTSRLYGTYDEKRSSSVILISRWIFMFLLLHNLTDIAWGVIIALRFFLEDVINDTDFVLIQDIFDEVKFVLIVLAIPFSYAVSLAVKAVV
Sbjct:    1 MSNIDNYPDFEDYQDPLTVETYEVTTRDLILFSIRIAVCLIFLVCTFYVLISGLFLHKYIKNWKLCLVTCGALSAWLGLSVYSDHIDEYWAGGFVIHYQTRNSIFQWFLNLFHGLTLFLTLLLLGHLADFQKRGCWLFLVALTIIVPIIYSVVIILVDLYAKKRFAGRKWSAFVVLFRTGIYNVLNTLLLLSFLPRFCTSRLYGTYDEKRSSSVILISRWIFMFLLLHNLTDIAWGVIIALRFFLEDVINDTDFVLIQDIFDEVKFVLIVLAIPFSYAVSLAVKAVV 287          
BLAST of EMLSAG00000001268 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1100_size62683-snap-gene-0.6 (protein:Tk09820 transcript:maker-scaffold1100_size62683-snap-gene-0.6-mRNA-1 annotation:"glutamate receptor kainate 2-like isoform x1")

HSP 1 Score: 177.948 bits (450), Expect = 1.382e-50
Identity = 98/236 (41.53%), Postives = 152/236 (64.41%), Query Frame = 0
Query:    9 DFEDYQDPLTVETYEVTTRDLILFSIRIAVCLIFLVCTFYVLISGLFLHKYIKNWKL-CLVTCGALSAWLGLSVYSDHIDEYWAGGFVIHYQTRNSIFQWFLNLFHGLTLFLTLLLLGHLADFQKRGCWLFLVALTIIVPIIYSVVIILVDLYAKKRFAGR-KWSAFVVLFRTGIYNVLNTLLLLSFLPRFCTSRLYGTYDEKRSSSVILISRWIFMFLLLHNLTDIA-WGVIIAL 241
            D++DY++      YE+   D      R  V LIFL+    V ++ +   K +KNW+L CLV+  +L  WLG++ Y DHIDEY+     +  Q R SI+    NL HG+TL++ +LLL HL+DFQ RG WL  V++ ++VP+++S+V++++DL   +      +W+  +   R  +YN + ++LL+ F  RFCTSRLYGTY+E RS+ V+++SRW+F FLLLHNLT +A +G  +A+
Sbjct:   43 DYDDYEELYPQLEYELKAIDWATMITRGVVILIFLISYMLVFVN-VARGKRMKNWRLYCLVSL-SLLCWLGMAFYQDHIDEYFVHEVTLFPQPR-SIYWCVRNLLHGITLYMIVLLLSHLSDFQHRGIWLMFVSMVVLVPLVFSIVVLIIDLRVPEESRRSWEWNIGISAMRIFLYNFVTSILLVVFTARFCTSRLYGTYEESRSTLVVVVSRWVFAFLLLHNLTAMASFGTFVAI 275          
BLAST of EMLSAG00000001268 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold1100_size62683-processed-gene-0.3 (protein:Tk09822 transcript:snap_masked-scaffold1100_size62683-processed-gene-0.3-mRNA-1 annotation:"lipoma hmgic fusion partner-like 3 isoform 1")

HSP 1 Score: 85.5001 bits (210), Expect = 1.742e-19
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 0
Query:  196 RFCTSRLYGTYDEKRSSSVILISRWIFMFLLLHNLTDIA-WGVIIALRFFLEDVIND-TDFVLIQDIFDEVKFVLIVLAIPFSY 277
            +FCTSRLYGTY+E RS+ V+++SRW+F FLLLHNLT +A +G  +A+   +  + ++ T+ +L   I DEV F LIVLAIP SY
Sbjct:   29 QFCTSRLYGTYEESRSTLVVVVSRWVFAFLLLHNLTAMASFGTFVAI--LVPGLTSETTNAILAHRILDEVAFFLIVLAIPVSY 110          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001268 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001268 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001268 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012680.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1209:5237... [more]
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BLAST of EMLSAG00000001268 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001268 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001268 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001268 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold1100_size62683-snap-gene-0.61.382e-5041.53protein:Tk09820 transcript:maker-scaffold1100_size... [more]
snap_masked-scaffold1100_size62683-processed-gene-0.31.742e-1953.57protein:Tk09822 transcript:snap_masked-scaffold110... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1209supercontigLSalAtl2s1209:52377..57511 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1209-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001268 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001268EMLSAT00000001268-697115Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1209:52377..57511-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001268-684034 ID=EMLSAG00000001268-684034|Name=EMLSAG00000001268|organism=Lepeophtheirus salmonis|type=gene|length=5135bp|location=Sequence derived from alignment at LSalAtl2s1209:52377..57511- (Lepeophtheirus salmonis)
ATGTCAAATATAGATAACTATCCCGATTTTGAAGACTATCAGGATCCTCT CACAGTGGAGACCTATGAGGTCACGACGCGTGACTTGATCCTCTTCTCCA TTCGAATCGCAGTGTGCCTTATATTTCTTGTTTGTACTTTCTATGTTCTC ATTTCTGGACTCTTTTTACACAAATACATTAAAAATTGGAAGTTGTGTTT AGTGACGTGTGGAGCCTTGTCAGCTTGGCTCGGACTCTCTGTATACTCTG ATCATATTGATGAGTATTGGGCCGGAGGCTTTGTAATACATTATCAAACT AGGAACTCCATTTTTCAATGGTTCCTCAATCTCTTTCACGGACTTACTCT GTTCCTTACGCTGTTATTGCTCGGACATTTAGCAGACTTTCAGAAAAGAG GATGTTGGCTCTTCCTCGTGGCCCTAACGATCATTGTGCCCATAATATAT TCTGTTGTTATTATTCTTGTGGATCTATATGCAAAGAAGCGCTTTGCAGG TAGGAAGTGGAGTGCCTTCGTCGTTTTGTTTCGAACGGGGATCTACAACG TTCTCAACACTCTTCTATTATTAAGCTTTTTACCGAGGTAAGTTGACACC CATGCCTATATGTGTATTATTATTATTACCTCTCAACAACTCCAAGTGTC TTTTTACCATATCAATCAAAGCAATAATATGATCCGCGCTGAAGGGATAT TCAATTTTAACTTTTTATATCTCCACCTTTTGGACATTTGACATACTTAG GTATTAAGTACTTATTGAAAGTACATAGATGCGCCATTTTGTTGTTTCCA TCTTTACAAATAATTATTCATTTCTCATTGCCATAAAACAGCATTTATAA TATATAAATAATATTTATCCTATTTACCTTGAGTCCTCCTCTCCTACCCC CCTCTCCTTCTAAATAAGCTAAATCCCTTCTGCATTTTTTGAATGAATGC ACCCAACCTTGTCTGATCCTTAAGTTGTTTTGTAAAAAGAGACCTACTAA TAAGACGTATGCAAAAAATATTATAAATTTAATAAAACTAATACTTTCTT AGTGAAGAAATTTCCTTGGAAGAAAGGCAAATATGTATATATTCTAGCTA TTAATTATAGAATTCGGGAAGCAAGGTTTCAAATTGGAGGTTTTTGTGAT GAAGTGGTTAAATCCTTTTTGTAATATTCAATGTTATACTATACTTCATT TTATTTGAATATTTGTCTTTATGTGGTGTTTATTGTCATAGGTTTACTTG ATATATTACGTATGTTTGATAGAACATAAATAGAACAATTTTTATTTCCC ATTAGGTTAGAAGTGAAAGATATCTACATAAGTATTATTTATTAGTGTAG GAAGGTATGGATTTATTCATTCTAAATATGTAAGTATTTATAAGTTCCTT ATGTATTGTGACAAAATAAACTGATAACAAAGGGTGGTGGTTAGAGAGTG AAGTTTGTTTCCTTCGGGTTCATTGTATTGCGTACATATTATACGTAAAT CTTTATATTCCATTGTATTGTAACAAATAAATGAAGAAATTCTAATGGTA TACACATTTCGCAACAACTCTAGTAAAATAATTAAAGGAGCAATGTTTCT AATTATAAATAATACAATCCTATATTATCTAAATTTCCAGTCAAAATCTG TTATTTAAATGCTAAAATCTATATATATAATTCCTTACAGATTTTGTACG TCCCGATTGTACGGAACCTATGATGAAAAGCGAAGTTCCTCAGTTATCCT CATATCCAGATGGATATTTATGTTTCTTCTTCTACATAATTTAACGGATA TCGCATGGGGAGTCATTATCGCACTACGTTTCTTCTTAGAGGATGTAATT AATGATACAGACTTTGTACTCATCCAGGATATTTTTGATGAAGTCAAGTT TGTGCTCATTGTACTTGCAATTCCTTTTTCCTATGCAGTTTCCCTTGCTG TGAGAACTTGTTGCTCACACGATGAGGATGCAAAAAATTTAGAAATGGAT AAGATTGATAAAATCTACGAGGAAGTAAGGAGCTTTAAACCAATATTTTA ATAGCATTTATTATTACACAAAATATTTTTTTCTTTTCCAGGTATGGAAC CCTGAGGATCGCAAAGATACCCTCGACTTCCCTGTCACATCAGACTCTTT ATATACTATTGATAGTGGAGTGAGTGGGTTCAATCGGGATCCGAATGTAC GGAAAAAAGATAGGAAAAAACGAGAGTCCTACTTAGAAGCAATGTCAAAT GGTTCATTTGATGAGCGAGAAGGGGATAAGTCCGTCACTTCCGAACCTAT AGACTTATAAATTCATAAACTATCTTCCCAAACGCATCTTTTGAACCTAT TTATTGTCTTTTTTATCATTTTTACTTCATCTATGTACTCAAAAACCACC TATATACATATACATAATCATATCCCAGCTGTAGATAAATAAATTTATCG CGTTATACAACGACGTTTACTTCTTAAAAAACAAGTTTTTACGTAATATA GGCGCATATAACTACCATAAAAATGAGTAAGTTGTTTTTTAAGGATGATC TATTCCATTCTTCTAAGAACTTTAAAATATTATTCACCCATATGATTAAT CAAGTAATATATTAATTAAATGGCTGTTCTGAGTATTTTCATACAAAATA GTAGGGTTTCAACTTTTATCTGTCCTTAATATGCTACATAAAATCACCTC TTTCCCACGTTCCATCCCTATTATTTGTCCTTGAAAAAAGTACCAAATTT TAAAGAGCTCTCTACAAGGTATCATTTGCATTAATATTATAATGAGTACC TCAGTTTACCAATTGAATTAATTAAGTAAAACTTTAAGTATATTTCGTAC TCGAGAATAGTTTTTCATTGCTCTTAATTTAGGCATAATTAAAGTTCTCA TTTTACTTATAAAAATTAGTGAAGATTGATTGATGATTACGTCATTGGCT TTTATCCGTGATAATGTTATCACGTATACCAACAAAGTTGAACAGAAGTT ATGTTTTTCCCCTTGTGTGTTTGTTAGTCACCAGTATTACAAAAAAAGTT ACGGATCGATTTTAACAAACTATGTACGATAATTATGTATGGTGACCGTA AGAAGCCACTTAATTTAGAGAGGTCAAGGTAACACAACAAGTAAAAAATT TGGAATTAACTTTGGAATAACTTGAGATACATAACTCAATTTGATTTTAT ACAAGGGCTTTGCACTCTACCGAGTGGCCATTCTAATTATTATTTGGGAC AGTTTTGCGTCCAAATCAGTCGTGTCCTTAAGTTTTAAGCATGGACGTCA AATCTCTACAAAATATCTTTGCATTAAAGGACCAAAAATATGGAATGCAA ATGTTACTATGTAATATGATCGTCCTATCATTATAATCTATATAAATAAT TTGATAGCTGCTATTCAAAGGATTCGAAGCTCATATCAATTACAATTTCC TTAACTATTTTGTGCATAAAGTAAGTATCAATACTCTTAATAACCTACAT ATTAGTATAAAATGAGGAAAAGCTACAGCGTCTTACTACTCTTAAAGATT CAATATACATACCTACGTATGTATATATTTATGATAAATGTATTTTATAG GATGTCAAGGGTAATGACTCATGCATCTATAATCTATATTGAAACAACTC ACCAAATTATATGTAGATTCTTCCAGGATTTTCTAAGTGTTTTAGGCATA TGGGAAATTCATGCAATGTCCTACATTTAATTATTTCATAATATAAATTT TATTTTATGTAACTAATTAAATTAAATGTGGATCCATATTAAATAAATGA TCACTTGGTTTAAAGTGTTTAATATTTATGCTTTGTAAATGATACTCAAC GAAGGGGAATCCCATGGTCTCTCAAGAAAATAATCCACCCACTATTAGTG ATATTGTTCACATGAAGGTTATGAGTATTGAGGAGACAAAACGGTTGATC TAATAATGAAACAAACAAAAACAACATGTATCTAAATTAGCTTCACTCAT TAACACAACTTGACTTGGGATGGGGGTTTTGTAGAGCTCGAAGAGAATAA AACTGTAAGGTTTATCGACAAAAATATAATTTCTAATAATAATGCATGTC CAAAGATAAGATACTCTTATACAATTTTAAATGATTAAGAATTCATGGTG ATAATTAATTTTCACTTTTGACATGTTTGTCGTTTTTTTCCTTTGAGTCT CTTAAGGTAAGACATATCAATGGTGCATATGCGTTGTTTACACATATTAG TGGGTAAAAAAAGAAAAAGAGAGRCCTGCCGTTTCGGGGCAAAATAAAAC CACTCCCCGAATTATTAGGTCATTGAATAAAATAAAAAAATAGGTGTATT TTACTCAAATAGAAGGCACTCGGGAAATTCTTTTCAGCATGGACCATTTT TTTAACAACAAGCTACACACTGATACGACACCTTGCAGATTTTTATTTTT TTTAGTTTGCTCATGTTTGTTCGAAAAAAAATATCACCTTGAATATTGAT AGATGTAAAGTTGTATACTTGGGCTATGAACATCTTTTGACCCACATCAT ATGTATTATGATATTTGTTTATGAAAATTACAGTTTTATTCTTCTTGCGC TCTACAGAACCCCTATCCCTAGTCATTTTTGATAGAGGGTGTGTGAAGGA GTGAACATATTTGAGGTACATGTTTCCCCCCCCCCCCTTATTWTTTAAAC TGGCATGCTGTCACCTTCCTTAGAGTCTCCTTAGGTAAAGATATAGTAAA ATGTTATAATTTCTCAAAAATATATAAAGAAATACTTAAATTCTACAGTA TTTATTATTTACTAACGGGATGCAGCTCAACGACAATTTCCCTGGAAATA AGTAACTCTAATGTAGATGTTGCTTCAAATTAGGTAGTCCATCATTTCTT ACACAATTAGGAAAAATGTAGGAATAACACCTCTCAGCATGACTTCCATT TCAACTTTCTGTTGTTTTCTTATTTATCTAGAGTAGAAATAAATATATAA AGTATTATTGCCTAAATGTAATGATTAATTGTCATAACAATTATATTTTG ACACTTGAGAAATGACTAAACATTTTATAATATTTCTTTAAACGTGCAAT GACAATTCATTTCCTAGGTAAAAGCTGTTGTTTAA
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