EMLSAG00000001338, EMLSAG00000001338-684104 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001338
Unique NameEMLSAG00000001338-684104
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001338 vs. L. salmonis peptides
Match: EMLSAP00000001338 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1223:326354:328131:-1 gene:EMLSAG00000001338 transcript:EMLSAT00000001338 description:"maker-LSalAtl2s1223-augustus-gene-2.74")

HSP 1 Score: 199.519 bits (506), Expect = 3.064e-67
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 
Query:    1 LPNGIPVVQWLILPRRILRVLSIRLRIGSSIYDETQKKITDRTFLRSTIYNVSLFRLISSIGFAECQLLYYHEESRILEVSSEWYPRCPVVNPTTKNLE 99
            LPNGIPVVQWLILPRRILRVLSIRLRIGSSIYDETQKKITDRTFLRSTIYNVSLFRLISSIGFAECQLLYYHEESRILEVSSEWYPRCPVVNPTTKNLE
Sbjct:    1 LPNGIPVVQWLILPRRILRVLSIRLRIGSSIYDETQKKITDRTFLRSTIYNVSLFRLISSIGFAECQLLYYHEESRILEVSSEWYPRCPVVNPTTKNLE 99
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001338 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001338 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001338 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000013383.064e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1223:3263... [more]
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BLAST of EMLSAG00000001338 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001338 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001338 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001338 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1223supercontigLSalAtl2s1223:326354..328131 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1223-augustus-gene-2.74
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001338 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001338EMLSAT00000001338-697185Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1223:326354..328131-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001338-684104 ID=EMLSAG00000001338-684104|Name=EMLSAG00000001338|organism=Lepeophtheirus salmonis|type=gene|length=1778bp|location=Sequence derived from alignment at LSalAtl2s1223:326354..328131- (Lepeophtheirus salmonis)
CTTCCGAATGGTATCCCCGTTGTCCAGTGGTTAATCCTACCACGAAGAAT
CTTGAGGTATGTATTATATAGCTTTTTTAATCATGAGTTATTGAATGATG
ATTTCCTATGTATCAATTGGTTAGAACTGGAGTGTTACGATGAAGCCTGT
TAACTAGGGCGAACTGATTATTTGTCATAAACTTATTATTTCATTGTTTC
TAGTTCGAGTAACTAATTTCTTGTTTCTTTCATTATAGGGTACTCAGCAT
AAGATTACGAATTGGATCATCCATTTATGACGTAAGTTCAACTATTTTTG
CATTTTTTATCCATTGAAATCCCAGCTCCTCACCTCAGGTTCTGGATTTA
ATTTATATCCGAACCCTGAGCTTTTCTATGAGTCTAGGGAAGAATAAAAT
ATTTAATCTCTCTTAAAACACATGTTCGTTCTTTATGAGCGGGGGTGCAC
CTGAAGTTAGATACAGCGTCTTTTACAATTTTCGAACTGAAGAATTTAGT
TGTTCTTTCATTTCCTTCATTAATTCTTTTTTTTCTTTCTGATATAGATT
ATGTCAAGGTTTCCCNTGTTGTAATTACAAGAGTGTTTTATCCTGTATTA
ACCATAGAATTGCATGTTCTTGAGGTATGTATTATATACCCATTTTGAAT
AAATGTAATTGAATGATGATTTCCTATGTATCAATTGGTTAGAACTGGAG
TGTTACGATGAAGCCTGTAAACTAGGGCGAACTGATAATTTTTTGTAGAA
CATTTAACATTTCCGTGATTCTATTTCGTGCGACTAATTTTTCGTTTTTT
CCTTTTTAGGAAACTCAAAAAAAGATTACTGATAGGACCTTCCTCCGATC
AACCATTTACAATGTAAGTTCAATTATTTTTGCGTTCTCTATCTTGTGAA
ATCCCAGCTCCTCACCTCAGGTTCTAGATTGAATATATATCTGAACCCTG
AGCTTGTTCCATGAGTTTAGGGAAGAATAATTAGATAAATCTCTCTTAAA
ACACATGTTCGTTCTTTATGAGTGGGGGTGCACCTGAAGTTAGATATAGC
GCCCTTAAAAATTATCTCATTGAGGAATGTAATTTTTTTTTATGTCTTGA
ATACATACTTATTTTTTTGGTATTATATAGGTTTATTCCGGTTGATTTCC
TCCATTGGATTTGCAGAGTGTCAACTTCTATATTACCACGAAGAATCACG
TATTCTTGAGGTATGTATCATGTAGCTATTTTTGGCATCTGTTATTAAAT
GATGATTTCCTATGTATCAATTGGTTAGAACTGGAGTGTTACGATGAAGC
CTGTAAACTAGGGCGAACTGATTATTTTGAAATTAACTATTAATATTTTC
ATGATTCTATTTCAATTACTAATTTCTCGTTTCTTTTTTCCTAACAGGAT
ACTCAACACAAGTTAATAAATCGGATCTTTCCCTGATGAGCTATTCACGA
TGTAAGTTCAACAATTTCGCATTCTTTATCTATTAAAATCCCAGCTCCTC
ACCTCAGGTTCTGGATTTAATTTATATCCGAACACTGAGCTAATCTATGA
GTTGAGGGAAGAATAAAATAATTAATCTCTCTTTAAAACACATGTTTGTT
CTTTATGAGCGGGGGTGCACCTGAAGTTAGATACAGCGCCTTTTGAAACT
CCTGGAATTAAAGAATTTAACTGGTCNTTCATTTCCTTAATTCACTCTTC
TTCTTTTTAATTATTTAGGTTTCTTCCGAATGGTATCCCCGTTGTCCAGT
GGTTAATCCTACCACGAAGAATCTTGAA
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