EMLSAG00000001344, EMLSAG00000001344-684110 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001344
Unique NameEMLSAG00000001344-684110
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592818421|gb|GAXK01136147.1| (TSA: Calanus finmarchicus comp1850850_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.532e-6
Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 0 
Query:   23 CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPK--TCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPS 115
            C FNG  Y  GSII   PHCC+ MIC+++G   D  +IG  +    GCC   + GK  +    G     F  R  CC G+ +   S+ +P   PS
Sbjct: 1422 CIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQ-MIGNTRKPASGCCI--WRGKMYM---DGENFGPFWSRKVCCRGEALSKRSWWQPFPLPS 1688
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592818420|gb|GAXK01136148.1| (TSA: Calanus finmarchicus comp1850850_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 4.690e-6
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 0 
Query:   23 CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPK--TCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKP 110
            C FNG  Y  GSII   PHCC+ MIC+++G   D  +IG  +    GCC   + GK  +    G     F  R  CC G+++    + +P
Sbjct: 1422 CIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQ-MIGNTRKPASGCCI--WRGKMYM---DGENFGPFWSRKVCCRGEILSKRWWWRP 1673
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592949411|gb|GAXK01009142.1| (TSA: Calanus finmarchicus comp1923130_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.487e+0
Identity = 24/86 (27.91%), Postives = 38/86 (44.19%), Query Frame = 0 
Query:   21 TCCQFNGQCYKPGSIITTFPHCCTQMICSK--KGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPT 104
            T C FN    +P    +  P  C+   CSK  + P++   +  + + C CC   YNG   L+ +G        +   CC G+L+ T
Sbjct:   67 TMCCFNSSGLQPLDSTSLVPSLCSTKTCSKTTRHPTAFWLIQKEHQGCDCCV--YNG--SLVPDGWSIPLNRFQNLTCCKGELLET 312
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592949412|gb|GAXK01009141.1| (TSA: Calanus finmarchicus comp1923130_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.507e+0
Identity = 24/86 (27.91%), Postives = 38/86 (44.19%), Query Frame = 0 
Query:   21 TCCQFNGQCYKPGSIITTFPHCCTQMICSK--KGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPT 104
            T C FN    +P    +  P  C+   CSK  + P++   +  + + C CC   YNG   L+ +G        +   CC G+L+ T
Sbjct:   67 TMCCFNSSGLQPLDSTSLVPSLCSTKTCSKTTRHPTAFWLIQKEHQGCDCCV--YNG--SLVPDGWSIPLNRFQNLTCCKGELLET 312
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592863206|gb|GAXK01094356.1| (TSA: Calanus finmarchicus comp49420_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.728e+0
Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 0 
Query:   12 AATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQM 46
            A++  + Q+ CC    Q Y P S   T P CCT+ 
Sbjct:  194 ASSTSQPQTQCCTTASQTYPPASTAATSPTCCTET 298
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592863202|gb|GAXK01094360.1| (TSA: Calanus finmarchicus comp49420_c12_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.096e+0
Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 0 
Query:   12 AATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQM 46
            A++  + Q+ CC    Q Y P S   T P CCT+ 
Sbjct:  173 ASSTSQPQTQCCTTASQTYPPASTAATSPTCCTET 277
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592933747|gb|GAXK01024806.1| (TSA: Calanus finmarchicus comp6034980_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.650e+0
Identity = 18/42 (42.86%), Postives = 22/42 (52.38%), Query Frame = 0 
Query:   17 EAQSTC--CQFNGQCYKPG--SIITTFPHCCTQMICSKKGPS 54
            E+Q  C  C + GQ +KP   SI TTF HC        +GPS
Sbjct:  241 ESQDICKVCLYIGQTWKPNILSISTTFSHCKGHSCLPLQGPS 366
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592953878|gb|GAXK01004675.1| (TSA: Calanus finmarchicus comp1246823_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.521e+0
Identity = 13/34 (38.24%), Postives = 20/34 (58.82%), Query Frame = 0 
Query:   20 STC-CQFNGQCYKPGSIITTFPHCCTQMICSKKG 52
            S C CQ +G  Y  GSII      C+ ++C+++G
Sbjct: 1372 SVCNCQHDGALYPCGSIIKYDAESCSHLLCTQEG 1473
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BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9")

HSP 1 Score: 241.891 bits (616), Expect = 3.011e-83
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPSPLA 118
            MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPSPLA
Sbjct:    1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPSPLA 118
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BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2")

HSP 1 Score: 176.407 bits (446), Expect = 1.829e-57
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0 
Query:    1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPS 115
            MKFV+LL LAMA  FV+A+ +CC +NGQCY+PGSIITTF HCC QM CSK G +  TN+IGKPK CGCCRDPYN  H LIQNGGYG+TKFGRRFFCCDG+LV TFSF+KP ++PS
Sbjct:    2 MKFVMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGG-TIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPS 115
[Close]
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4")

HSP 1 Score: 68.9366 bits (167), Expect = 5.213e-16
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0 
Query:    4 VILLCLAMAATFVEAQSTC--CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMK 109
            V L  LA++   V   S    C +NG+ Y+ G      P CCT+M+CS  G  S     GK K CG C DP+N K+  I +G YGR K   R+FC  G+ V T  F +
Sbjct:    3 VALFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYP-TYGKGKKCGXCIDPFN-KNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFKR 108
[Close]
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9")

HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-15
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 0 
Query:    4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111
            + LL L+ +A      ++  C FN + Y  G+++ +F  CC QM C   G    T    +   C CCRDPY     LI++G YGR +   R+FC +G+L+ TF++   N
Sbjct:    5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGAR---CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109
[Close]
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5")

HSP 1 Score: 66.2402 bits (160), Expect = 6.441e-15
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0 
Query:    4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111
            + LL L+ +A      ++  C FN + Y  G+++ +F  CC QM C   G     N  G    C CCRDPY     LI++G YGR +   R+FC +G+L+ TF++   N
Sbjct:    5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVY-YNRYGTR--CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001344 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001344 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592818421|gb|GAXK01136147.1|1.532e-636.84TSA: Calanus finmarchicus comp1850850_c0_seq1 tran... [more]
gi|592818420|gb|GAXK01136148.1|4.690e-635.56TSA: Calanus finmarchicus comp1850850_c0_seq2 tran... [more]
gi|592949411|gb|GAXK01009142.1|1.487e+027.91TSA: Calanus finmarchicus comp1923130_c1_seq2 tran... [more]
gi|592949412|gb|GAXK01009141.1|1.507e+027.91TSA: Calanus finmarchicus comp1923130_c1_seq1 tran... [more]
gi|592863206|gb|GAXK01094356.1|2.728e+037.14TSA: Calanus finmarchicus comp49420_c1_seq3 transc... [more]
gi|592863202|gb|GAXK01094360.1|4.096e+037.14TSA: Calanus finmarchicus comp49420_c12_seq3 trans... [more]
gi|592933747|gb|GAXK01024806.1|5.650e+042.86TSA: Calanus finmarchicus comp6034980_c0_seq1 tran... [more]
gi|592953878|gb|GAXK01004675.1|6.521e+038.24TSA: Calanus finmarchicus comp1246823_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000013443.011e-83100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:1191... [more]
EMLSAP000000083711.829e-5773.04pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508... [more]
EMLSAP000000052265.213e-1639.81pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:... [more]
EMLSAP000000013501.144e-1534.86pep:novel supercontig:LSalAtl2s:LSalAtl2s122:13129... [more]
EMLSAP000000052256.441e-1535.78pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:... [more]
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BLAST of EMLSAG00000001344 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001344 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001344 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001344 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1228supercontigLSalAtl2s1228:119152..119577 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1228-processed-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001344 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001344EMLSAT00000001344-697191Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1228:119152..119577-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001344-684110 ID=EMLSAG00000001344-684110|Name=EMLSAG00000001344|organism=Lepeophtheirus salmonis|type=gene|length=426bp|location=Sequence derived from alignment at LSalAtl2s1228:119152..119577- (Lepeophtheirus salmonis)
ATGAAGTTCGTCATACTTTTGTGCCTTGCCATGGCTGCTACATTTGTAGA
GGCCCAGTCAACTTGTTGCCAATTTAATGGACAATGTTATAAGCCTGGAT
CTATTATTACAACTTTCCCTCATTGTTGTACACAAATGATTTGCTCAAAA
AAGGGACCCTCTAGTGAGTATTAAATTAATTAATCAACCACCAAACAAAA
TGCTCAATCATATACAACAAACAATCATAATTTCAGTACAAATGTCATTG
GAAAGCCCAAAACATGTGGATGTTGTAGAGATCCATATAATGGTAAACAT
GGTTTGATTCAAAATGGTGGCTATGGAAGAACGAAATTTGGAAGACGGTT
TTTCTGCTGTGATGGCAAACTAGTTCCAACTTTTTCCTTTATGAAACCTA
ATAAAACTCCAAGTCCCCTTGCTTAA
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