EMLSAG00000001344, EMLSAG00000001344-684110 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592818421|gb|GAXK01136147.1| (TSA: Calanus finmarchicus comp1850850_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 1.532e-6 Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 0 Query: 23 CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPK--TCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPS 115 C FNG Y GSII PHCC+ MIC+++G D +IG + GCC + GK + G F R CC G+ + S+ +P PS Sbjct: 1422 CIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQ-MIGNTRKPASGCCI--WRGKMYM---DGENFGPFWSRKVCCRGEALSKRSWWQPFPLPS 1688
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592818420|gb|GAXK01136148.1| (TSA: Calanus finmarchicus comp1850850_c0_seq2 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 4.690e-6 Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 0 Query: 23 CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPK--TCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKP 110 C FNG Y GSII PHCC+ MIC+++G D +IG + GCC + GK + G F R CC G+++ + +P Sbjct: 1422 CIFNGVSYPCGSIIKRNPHCCSDMICNREGTIVDQ-MIGNTRKPASGCCI--WRGKMYM---DGENFGPFWSRKVCCRGEILSKRWWWRP 1673
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592949411|gb|GAXK01009142.1| (TSA: Calanus finmarchicus comp1923130_c1_seq2 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 1.487e+0 Identity = 24/86 (27.91%), Postives = 38/86 (44.19%), Query Frame = 0 Query: 21 TCCQFNGQCYKPGSIITTFPHCCTQMICSK--KGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPT 104 T C FN +P + P C+ CSK + P++ + + + C CC YNG L+ +G + CC G+L+ T Sbjct: 67 TMCCFNSSGLQPLDSTSLVPSLCSTKTCSKTTRHPTAFWLIQKEHQGCDCCV--YNG--SLVPDGWSIPLNRFQNLTCCKGELLET 312
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592949412|gb|GAXK01009141.1| (TSA: Calanus finmarchicus comp1923130_c1_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 1.507e+0 Identity = 24/86 (27.91%), Postives = 38/86 (44.19%), Query Frame = 0 Query: 21 TCCQFNGQCYKPGSIITTFPHCCTQMICSK--KGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPT 104 T C FN +P + P C+ CSK + P++ + + + C CC YNG L+ +G + CC G+L+ T Sbjct: 67 TMCCFNSSGLQPLDSTSLVPSLCSTKTCSKTTRHPTAFWLIQKEHQGCDCCV--YNG--SLVPDGWSIPLNRFQNLTCCKGELLET 312
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592863206|gb|GAXK01094356.1| (TSA: Calanus finmarchicus comp49420_c1_seq3 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 2.728e+0 Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 0 Query: 12 AATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQM 46 A++ + Q+ CC Q Y P S T P CCT+ Sbjct: 194 ASSTSQPQTQCCTTASQTYPPASTAATSPTCCTET 298
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592863202|gb|GAXK01094360.1| (TSA: Calanus finmarchicus comp49420_c12_seq3 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.096e+0 Identity = 13/35 (37.14%), Postives = 18/35 (51.43%), Query Frame = 0 Query: 12 AATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQM 46 A++ + Q+ CC Q Y P S T P CCT+ Sbjct: 173 ASSTSQPQTQCCTTASQTYPPASTAATSPTCCTET 277
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592933747|gb|GAXK01024806.1| (TSA: Calanus finmarchicus comp6034980_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 5.650e+0 Identity = 18/42 (42.86%), Postives = 22/42 (52.38%), Query Frame = 0 Query: 17 EAQSTC--CQFNGQCYKPG--SIITTFPHCCTQMICSKKGPS 54 E+Q C C + GQ +KP SI TTF HC +GPS Sbjct: 241 ESQDICKVCLYIGQTWKPNILSISTTFSHCKGHSCLPLQGPS 366
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Match: gi|592953878|gb|GAXK01004675.1| (TSA: Calanus finmarchicus comp1246823_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 6.521e+0 Identity = 13/34 (38.24%), Postives = 20/34 (58.82%), Query Frame = 0 Query: 20 STC-CQFNGQCYKPGSIITTFPHCCTQMICSKKG 52 S C CQ +G Y GSII C+ ++C+++G Sbjct: 1372 SVCNCQHDGALYPCGSIIKYDAESCSHLLCTQEG 1473
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9") HSP 1 Score: 241.891 bits (616), Expect = 3.011e-83 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 Query: 1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPSPLA 118 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPSPLA Sbjct: 1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPSPLA 118
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2") HSP 1 Score: 176.407 bits (446), Expect = 1.829e-57 Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0 Query: 1 MKFVILLCLAMAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPNKTPS 115 MKFV+LL LAMA FV+A+ +CC +NGQCY+PGSIITTF HCC QM CSK G + TN+IGKPK CGCCRDPYN H LIQNGGYG+TKFGRRFFCCDG+LV TFSF+KP ++PS Sbjct: 2 MKFVMLLSLAMAXAFVDAKPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGG-TIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSFVKPIRSPS 115
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4") HSP 1 Score: 68.9366 bits (167), Expect = 5.213e-16 Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 0 Query: 4 VILLCLAMAATFVEAQSTC--CQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMK 109 V L LA++ V S C +NG+ Y+ G P CCT+M+CS G S GK K CG C DP+N K+ I +G YGR K R+FC G+ V T F + Sbjct: 3 VALFLLALSILVVNGASKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYP-TYGKGKKCGXCIDPFN-KNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFKR 108
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9") HSP 1 Score: 68.5514 bits (166), Expect = 1.144e-15 Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 0 Query: 4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111 + LL L+ +A ++ C FN + Y G+++ +F CC QM C G T + C CCRDPY LI++G YGR + R+FC +G+L+ TF++ N Sbjct: 5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGAR---CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5") HSP 1 Score: 66.2402 bits (160), Expect = 6.441e-15 Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0 Query: 4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111 + LL L+ +A ++ C FN + Y G+++ +F CC QM C G N G C CCRDPY LI++G YGR + R+FC +G+L+ TF++ N Sbjct: 5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVY-YNRYGTR--CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001344 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001344 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 8
BLAST of EMLSAG00000001344 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000001344 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001344 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001344 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001344 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1228:119152..119577- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001344-684110 ID=EMLSAG00000001344-684110|Name=EMLSAG00000001344|organism=Lepeophtheirus salmonis|type=gene|length=426bp|location=Sequence derived from alignment at LSalAtl2s1228:119152..119577- (Lepeophtheirus salmonis)back to top Add to Basket
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