EMLSAG00000001345, EMLSAG00000001345-684111 (gene) Lepeophtheirus salmonis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:stau2 "staufen, RNA binding protein, homolog 2 (Drosophila)" species:7955 "Danio rerio" [GO:0008354 "germ cell migration" evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP] [GO:0005874 "microtubule" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR014720 Pfam:PF00035 ZFIN:ZDB-GENE-040426-687 Gene3D:3.30.160.20 GO:GO:0007281 SMART:SM00358 PROSITE:PS50137 GO:GO:0008354 KO:K17597 TreeFam:TF350296 GeneTree:ENSGT00730000110890 CTD:27067 EMBL:CR318587 EMBL:CR405710 EMBL:CR936299 EMBL:CU041413 RefSeq:NP_957219.2 UniGene:Dr.75888 Ensembl:ENSDART00000122903 Ensembl:ENSDART00000142457 GeneID:393899 KEGG:dre:393899 OMA:IAQDCKK NextBio:20814877 Uniprot:F1QJT6) HSP 1 Score: 55.0694 bits (131), Expect = 1.166e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 278 KSEISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPI 381
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:Stau2 "Double-stranded RNA-binding protein Staufen homolog 2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0006810 "transport" evidence=IEA] InterPro:IPR014720 Pfam:PF00035 RGD:621479 GO:GO:0005783 GO:GO:0005730 GO:GO:0006810 Gene3D:3.30.160.20 GO:GO:0003723 SMART:SM00358 PROSITE:PS50137 GO:GO:0005874 eggNOG:NOG299502 HOVERGEN:HBG005013 KO:K17597 CTD:27067 EMBL:AF483620 EMBL:AF483621 EMBL:AY684789 EMBL:AY684790 EMBL:AY549445 EMBL:AY549446 EMBL:AY549447 EMBL:AY549448 EMBL:BC085705 RefSeq:NP_001007150.1 RefSeq:NP_001007151.1 RefSeq:NP_604461.2 UniGene:Rn.73714 ProteinModelPortal:Q68SB1 SMR:Q68SB1 BioGrid:251277 PhosphoSite:Q68SB1 PRIDE:Q68SB1 GeneID:171500 KEGG:rno:171500 UCSC:RGD:621479 NextBio:622465 PRO:PR:Q68SB1 Genevestigator:Q68SB1 Uniprot:Q68SB1) HSP 1 Score: 53.9138 bits (128), Expect = 2.708e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:Stau2 "staufen double-stranded RNA binding protein 2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0044822 "poly(A) RNA binding" evidence=ISO] InterPro:IPR014720 Pfam:PF00035 RGD:621479 GO:GO:0005783 GO:GO:0005730 GO:GO:0006810 Gene3D:3.30.160.20 GO:GO:0003723 SMART:SM00358 PROSITE:PS50137 GO:GO:0005874 eggNOG:NOG299502 HOVERGEN:HBG005013 KO:K17597 CTD:27067 EMBL:AF483620 EMBL:AF483621 EMBL:AY684789 EMBL:AY684790 EMBL:AY549445 EMBL:AY549446 EMBL:AY549447 EMBL:AY549448 EMBL:BC085705 RefSeq:NP_001007150.1 RefSeq:NP_001007151.1 RefSeq:NP_604461.2 UniGene:Rn.73714 ProteinModelPortal:Q68SB1 SMR:Q68SB1 BioGrid:251277 PhosphoSite:Q68SB1 PRIDE:Q68SB1 GeneID:171500 KEGG:rno:171500 UCSC:RGD:621479 NextBio:622465 PRO:PR:Q68SB1 Genevestigator:Q68SB1 Uniprot:Q68SB1) HSP 1 Score: 53.9138 bits (128), Expect = 2.708e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:Stau2 "staufen (RNA binding protein) homolog 2 (Drosophila)" species:10090 "Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0044822 "poly(A) RNA binding" evidence=ISO] InterPro:IPR014720 Pfam:PF00035 MGI:MGI:1352508 GO:GO:0005783 GO:GO:0005730 GO:GO:0003725 GO:GO:0006810 Gene3D:3.30.160.20 SMART:SM00358 PROSITE:PS50137 GO:GO:0005874 eggNOG:NOG299502 HOGENOM:HOG000231025 HOVERGEN:HBG005013 KO:K17597 OrthoDB:EOG7NGQCG TreeFam:TF350296 GeneTree:ENSGT00730000110890 CTD:27067 ChiTaRS:STAU2 EMBL:AF459099 EMBL:AF459100 EMBL:AK015087 EMBL:AK028390 EMBL:BC010300 EMBL:BC025118 RefSeq:NP_001104742.1 RefSeq:NP_079579.2 RefSeq:XP_006495590.1 RefSeq:XP_006495591.1 RefSeq:XP_006495592.1 RefSeq:XP_006495594.1 RefSeq:XP_006495595.1 RefSeq:XP_006495596.1 UniGene:Mm.216257 PDB:1UHZ PDBsum:1UHZ ProteinModelPortal:Q8CJ67 SMR:Q8CJ67 MINT:MINT-243177 PhosphoSite:Q8CJ67 PaxDb:Q8CJ67 PRIDE:Q8CJ67 Ensembl:ENSMUST00000027052 Ensembl:ENSMUST00000054668 Ensembl:ENSMUST00000115359 Ensembl:ENSMUST00000144138 Ensembl:ENSMUST00000159558 Ensembl:ENSMUST00000162007 Ensembl:ENSMUST00000162435 Ensembl:ENSMUST00000162627 Ensembl:ENSMUST00000162751 GeneID:29819 KEGG:mmu:29819 UCSC:uc007ajn.2 UCSC:uc007ajo.2 UCSC:uc007ajq.2 UCSC:uc007ajr.2 InParanoid:Q8CJ67 OMA:XVIKESG EvolutionaryTrace:Q8CJ67 NextBio:306990 PRO:PR:Q8CJ67 ArrayExpress:Q8CJ67 Bgee:Q8CJ67 Genevestigator:Q8CJ67 Uniprot:Q8CJ67) HSP 1 Score: 53.5286 bits (127), Expect = 3.359e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:STAU2 "Double-stranded RNA-binding protein Staufen homolog 2" species:9606 "Homo sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0044822 "poly(A) RNA binding" evidence=IDA] InterPro:IPR014720 Pfam:PF00035 GO:GO:0005783 GO:GO:0005730 GO:GO:0003725 GO:GO:0006810 Gene3D:3.30.160.20 SMART:SM00358 PROSITE:PS50137 GO:GO:0005874 eggNOG:NOG299502 HOGENOM:HOG000231025 HOVERGEN:HBG005013 KO:K17597 OrthoDB:EOG7NGQCG TreeFam:TF350296 EMBL:Y19062 EMBL:AF459097 EMBL:AF459098 EMBL:AK001576 EMBL:AK002152 EMBL:AK023314 EMBL:AK293496 EMBL:AK294466 EMBL:AK303104 EMBL:CR627442 EMBL:AC018620 EMBL:AC027018 EMBL:AC100784 EMBL:BC008369 EMBL:BC008370 RefSeq:NP_001157852.1 RefSeq:NP_001157853.1 RefSeq:NP_001157854.1 RefSeq:NP_001157855.1 RefSeq:NP_001157856.1 RefSeq:NP_001157857.1 RefSeq:NP_055208.2 UniGene:Hs.561815 ProteinModelPortal:Q9NUL3 SMR:Q9NUL3 BioGrid:117978 IntAct:Q9NUL3 MINT:MINT-1426106 STRING:9606.ENSP00000348026 PhosphoSite:Q9NUL3 DMDM:73919458 PaxDb:Q9NUL3 PRIDE:Q9NUL3 DNASU:27067 Ensembl:ENST00000524104 GeneID:27067 KEGG:hsa:27067 UCSC:uc003xzm.3 UCSC:uc003xzs.3 CTD:27067 GeneCards:GC08M074332 H-InvDB:HIX0007585 HGNC:HGNC:11371 HPA:CAB020836 HPA:HPA019155 MIM:605920 neXtProt:NX_Q9NUL3 PharmGKB:PA36189 InParanoid:Q9NUL3 ChiTaRS:STAU2 GeneWiki:STAU2 GenomeRNAi:27067 NextBio:49639 PRO:PR:Q9NUL3 ArrayExpress:Q9NUL3 Bgee:Q9NUL3 CleanEx:HS_STAU2 Genevestigator:Q9NUL3 Uniprot:Q9NUL3) HSP 1 Score: 53.5286 bits (127), Expect = 3.587e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:stau "staufen" species:7227 "Drosophila melanogaster" [GO:0007316 "pole plasm RNA localization" evidence=IMP] [GO:0007315 "pole plasm assembly" evidence=NAS;IMP] [GO:0045450 "bicoid mRNA localization" evidence=NAS;TAS] [GO:0007318 "pole plasm protein localization" evidence=IMP;TAS] [GO:0006403 "RNA localization" evidence=IMP] [GO:0045179 "apical cortex" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0055059 "asymmetric neuroblast division" evidence=NAS] [GO:0005938 "cell cortex" evidence=IDA] [GO:0016324 "apical plasma membrane" evidence=IDA] [GO:0009925 "basal plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045180 "basal cortex" evidence=NAS;IDA;TAS] [GO:0045177 "apical part of cell" evidence=IDA] [GO:0048477 "oogenesis" evidence=TAS] [GO:0046011 "regulation of oskar mRNA translation" evidence=TAS] [GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IGI;TAS] [GO:0003725 "double-stranded RNA binding" evidence=ISS;TAS] [GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS] [GO:0005875 "microtubule associated complex" evidence=ISS] [GO:0007017 "microtubule-based process" evidence=ISS] [GO:0008017 "microtubule binding" evidence=ISS;NAS] [GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS] [GO:0008104 "protein localization" evidence=TAS] [GO:0019094 "pole plasm mRNA localization" evidence=TAS] [GO:0003729 "mRNA binding" evidence=NAS] [GO:0046012 "positive regulation of oskar mRNA translation" evidence=NAS] [GO:0007616 "long-term memory" evidence=IMP;TAS] [GO:0007400 "neuroblast fate determination" evidence=TAS] [GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=TAS] [GO:0008595 "anterior/posterior axis specification, embryo" evidence=IGI] [GO:0010606 "positive regulation of cytoplasmic mRNA processing body assembly" evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA] InterPro:IPR014720 Pfam:PF00035 EMBL:AE013599 GO:GO:0045167 GO:GO:0005875 GO:GO:0016324 GO:GO:0003725 Gene3D:3.30.160.20 GO:GO:0007616 GO:GO:0045180 GO:GO:0000932 GO:GO:0007400 GO:GO:0045179 GO:GO:0003730 SMART:SM00358 PROSITE:PS50137 GO:GO:0008017 GO:GO:0007017 GO:GO:0009925 GO:GO:0007318 GO:GO:0046012 GO:GO:0007317 GO:GO:0010606 GO:GO:0045451 GO:GO:0055059 GO:GO:0045450 GO:GO:0060293 eggNOG:NOG299502 KO:K17597 OrthoDB:EOG7NGQCG ChiTaRS:STAU1 GeneTree:ENSGT00730000110890 EMBL:M69111 EMBL:BT003228 EMBL:BT010297 PIR:A40315 RefSeq:NP_001163185.1 RefSeq:NP_476751.1 RefSeq:NP_725748.1 UniGene:Dm.4722 PDB:1EKZ PDB:1STU PDBsum:1EKZ PDBsum:1STU ProteinModelPortal:P25159 SMR:P25159 BioGrid:62749 IntAct:P25159 MINT:MINT-112231 PaxDb:P25159 PRIDE:P25159 EnsemblMetazoa:FBtr0086783 GeneID:37065 KEGG:dme:Dmel_CG5753 UCSC:CG5753-RA CTD:37065 FlyBase:FBgn0003520 InParanoid:P25159 OMA:RTHITPT PhylomeDB:P25159 EvolutionaryTrace:P25159 GenomeRNAi:37065 NextBio:801768 Bgee:P25159 Uniprot:P25159) HSP 1 Score: 50.447 bits (119), Expect = 4.817e-6 Identity = 24/58 (41.38%), Postives = 33/58 (56.90%), Query Frame = 0
Query: 132 RNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
RN ++ ++ + EEGP HMK F +G I N KK +K +AAE M +L KLP
Sbjct: 590 RNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKMLVELQKLP 647
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:H9L3K3 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003726 "double-stranded RNA adenosine deaminase activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006382 "adenosine to inosine editing" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA] [GO:0006606 "protein import into nucleus" evidence=IEA] [GO:0006611 "protein export from nucleus" evidence=IEA] [GO:0009615 "response to virus" evidence=IEA] [GO:0035455 "response to interferon-alpha" evidence=IEA] [GO:0043066 "negative regulation of apoptotic process" evidence=IEA] [GO:0044387 "negative regulation of protein kinase activity by regulation of protein phosphorylation" evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0045070 "positive regulation of viral genome replication" evidence=IEA] InterPro:IPR000607 InterPro:IPR002466 Pfam:PF02137 Pfam:PF02295 PROSITE:PS50139 PROSITE:PS50141 SMART:SM00550 SMART:SM00552 InterPro:IPR014720 Pfam:PF00035 Gene3D:3.30.160.20 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 TreeFam:TF315806 SMART:SM00358 PROSITE:PS50137 GeneTree:ENSGT00550000074412 OrthoDB:EOG7VHSX4 GO:GO:0003726 EMBL:AADN03008421 Ensembl:ENSGALT00000040721 PRO:PR:H9L3K3 Uniprot:H9L3K3) HSP 1 Score: 48.521 bits (114), Expect = 2.195e-5 Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 0
Query: 105 DASPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGD-ISVVASANSKKGAKNKAAEDMARKL 185
+ SP +L G++ I E + +E+ +S++GPPH F++C+K+GD I NSKKGAK AAE + L
Sbjct: 440 ELSPAAAQLSLLSGKHPISVLMEYGQKSGNMIEFLLLSQDGPPHDPRFSYCVKMGDQIFPAVVGNSKKGAKQMAAEVAVKIL 521
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:Stau1 "staufen double-stranded RNA binding protein 1" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0008157 "protein phosphatase 1 binding" evidence=IPI] [GO:0008298 "intracellular mRNA localization" evidence=IEA;ISO] [GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA;ISO] [GO:0043005 "neuron projection" evidence=IDA] [GO:0043025 "neuronal cell body" evidence=IDA] [GO:0044822 "poly(A) RNA binding" evidence=ISO] [GO:0070062 "extracellular vesicular exosome" evidence=ISO] InterPro:IPR014720 Pfam:PF00035 RGD:621778 GO:GO:0005737 GO:GO:0003725 GO:GO:0043025 GO:GO:0043005 Gene3D:3.30.160.20 SMART:SM00358 PROSITE:PS50137 CTD:6780 eggNOG:NOG299502 HOGENOM:HOG000231025 HOVERGEN:HBG005013 KO:K17597 EMBL:BC081755 RefSeq:NP_001103377.1 RefSeq:NP_445888.1 UniGene:Rn.9028 ProteinModelPortal:Q66HP4 PaxDb:Q66HP4 PRIDE:Q66HP4 GeneID:84496 KEGG:rno:84496 InParanoid:Q66HP4 NextBio:617071 Genevestigator:Q66HP4 Uniprot:Q66HP4) HSP 1 Score: 46.9802 bits (110), Expect = 6.411e-5 Identity = 29/93 (31.18%), Postives = 43/93 (46.24%), Query Frame = 0
Query: 132 RNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL----------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
RN + +E E GPPHMK F + +G+ SKK +K AA + +L +L P+ KK++ P + P GMNP+
Sbjct: 173 RNLPVNFEVARESGPPHMKNFVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPDYGQGMNPI 265
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:Stau "Staufen" species:8355 "Xenopus laevis" [GO:0005938 "cell cortex" evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI] InterPro:IPR014720 Pfam:PF00035 GO:GO:0005938 Gene3D:3.30.160.20 GO:GO:0030529 SMART:SM00358 PROSITE:PS50137 HOVERGEN:HBG005013 EMBL:AY342402 UniGene:Xl.22905 ProteinModelPortal:Q6JPI2 SMR:Q6JPI2 Uniprot:Q6JPI2) HSP 1 Score: 45.4394 bits (106), Expect = 2.074e-4 Identity = 31/93 (33.33%), Postives = 42/93 (45.16%), Query Frame = 0
Query: 132 RNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL----------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
RN S+ +E E GPPHMK F + +G+ SKK +K AA + +L KL PK KK+ + P GMNP+
Sbjct: 308 RNMSVNFEVTKETGPPHMKSFLTKVIVGEFLGEGEGKSKKISKKNAAIAVLEELRKLPPLPTVEKMRPKIKKKTKSIVKLPTSPEYGQGMNPI 400
BLAST of EMLSAG00000001345 vs. GO
Match: - (symbol:stau1 "staufen, RNA binding protein, homolog 1 (Drosophila)" species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IPI] [GO:0007281 "germ cell development" evidence=IMP] InterPro:IPR014720 Pfam:PF00035 ZFIN:ZDB-GENE-030131-6372 Gene3D:3.30.160.20 GO:GO:0003723 GO:GO:0007281 SMART:SM00358 PROSITE:PS50137 CTD:6780 KO:K17597 OMA:QGIQVEY OrthoDB:EOG7NGQCG TreeFam:TF350296 GeneTree:ENSGT00730000110890 EMBL:BX546446 RefSeq:XP_005168818.1 UniGene:Dr.7422 Ensembl:ENSDART00000133992 GeneID:334440 KEGG:dre:334440 PRO:PR:F1Q5V4 ArrayExpress:F1Q5V4 Bgee:F1Q5V4 Uniprot:F1Q5V4) HSP 1 Score: 44.669 bits (104), Expect = 3.430e-4 Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 0
Query: 94 LEEAPNEQQQEDASPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPK 190
L++ P QQ + + E P QE L ++ I E + RN +++E + E G PHMK F + +G+ + SKK AK +AA + +L +LP+
Sbjct: 249 LQKEPILQQITEMTDE-PAQENL-NKSEISQVFEIALKRNMPVDFEVLKEAGAPHMKSFVVRVVVGEFAGEGEGKSKKIAKKQAAIAVLEELRRLPQ 343
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592835346|gb|GAXK01122198.1| (TSA: Calanus finmarchicus comp106897_c0_seq4 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 3.077e-19 Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 0
Query: 109 EKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKLDKLPKAKKRAHPFQ 199
EK I IL+GRN ++FCN+QSKLRN MEWEQVSE GPPH K + + LK+G+++ +KK AK KAAE M KLD+LP+ KR PFQ
Sbjct: 382 EKSILAILKGRNPVMFCNDQSKLRNLHMEWEQVSEIGPPHDKTYEYQLKMGELAAQGVGKNKKDAKTKAAEVMVLKLDELPRINKR--PFQ 648
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592835347|gb|GAXK01122197.1| (TSA: Calanus finmarchicus comp106897_c0_seq3 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 3.145e-19 Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 0
Query: 109 EKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKLDKLPKAKKRAHPFQ 199
EK I IL+GRN ++FCN+QSKLRN MEWEQVSE GPPH K + + LK+G+++ +KK AK KAAE M KLD+LP+ KR PFQ
Sbjct: 382 EKSILAILKGRNPVMFCNDQSKLRNLHMEWEQVSEIGPPHDKTYEYQLKMGELAAQGVGKNKKDAKTKAAEVMVLKLDELPRINKR--PFQ 648
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592835348|gb|GAXK01122196.1| (TSA: Calanus finmarchicus comp106897_c0_seq2 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 3.802e-19 Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 0
Query: 109 EKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKLDKLPKAKKRAHPFQ 199
EK I IL+GRN ++FCN+QSKLRN MEWEQVSE GPPH K + + LK+G+++ +KK AK KAAE M KLD+LP+ KR PFQ
Sbjct: 382 EKSILAILKGRNPVMFCNDQSKLRNLHMEWEQVSEIGPPHDKTYEYQLKMGELAAQGVGKNKKDAKTKAAEVMVLKLDELPRINKR--PFQ 648
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592835349|gb|GAXK01122195.1| (TSA: Calanus finmarchicus comp106897_c0_seq1 transcribed RNA sequence) HSP 1 Score: 88.5817 bits (218), Expect = 3.862e-19 Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 0
Query: 109 EKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKLDKLPKAKKRAHPFQ 199
EK I IL+GRN ++FCN+QSKLRN MEWEQVSE GPPH K + + LK+G+++ +KK AK KAAE M KLD+LP+ KR PFQ
Sbjct: 382 EKSILAILKGRNPVMFCNDQSKLRNLHMEWEQVSEIGPPHDKTYEYQLKMGELAAQGVGKNKKDAKTKAAEVMVLKLDELPRINKR--PFQ 648
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592821347|gb|GAXK01133221.1| (TSA: Calanus finmarchicus comp27417_c0_seq1 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 9.753e-9 Identity = 54/209 (25.84%), Postives = 79/209 (37.80%), Query Frame = 0
Query: 22 NFPSWNYGCTLENNTQTGAFETFYNGVRESKRHEXXXXXXXXXXXXXXXXXXXXXQKSGSTPSQNEDSQKKVLEEAPNEQQ----------------------------QEDASPE-----KPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIG-----DISVVXXXXXXXXXXXXX-XEDMARKLDKLPKA 191
NFP+WNYG TL Q G + + R + + + PSQ E ++V + E++ D PE K + IL GRNA +F N + K R W +E+E+V EGP H + +++ L +G +++V A K K E M KLD LP A
Sbjct: 2017 NFPNWNYGTTLGGQGQHGGYTEY--------RDPGSYGNHGYGFTGPRGGGFSGRGGRCPLPSQEEIMPQEVAGQVAKEEEVMEKMPGVIIKNDDGSLVKVVDPNTPLPMPDVRPEPTRFDKSVHGILNGRNAAMFVNIECKKRGWDIEFEEVDAEGPVHDRTYSYTLTVGPPDSEEVTVTAGIAKSKKDAKKRCCEAMVLKLDDLPPA 2619
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592822388|gb|GAXK01132180.1| (TSA: Calanus finmarchicus comp26681_c1_seq2 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 4.430e-4 Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 0
Query: 116 LEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKL-----DKLPKAKKRA 195
++ +N + NE + + EW +SE GPPH K+FTW L +G + + +KK A+N AAE M L K K KKR
Sbjct: 812 MDQKNVNMALNEIAMMNGCVPEWTLISEAGPPHQKLFTWQLSLGQYTTTGTGPNKKMARNTAAEQMMATLPEEWKQKAGKVKKRG 1066
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592822389|gb|GAXK01132179.1| (TSA: Calanus finmarchicus comp26681_c1_seq1 transcribed RNA sequence) HSP 1 Score: 42.743 bits (99), Expect = 4.578e-4 Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 0
Query: 116 LEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKL-----DKLPKAKKRA 195
++ +N + NE + + EW +SE GPPH K+FTW L +G + + +KK A+N AAE M L K K KKR
Sbjct: 1006 MDQKNVNMALNEIAMMNGCVPEWTLISEAGPPHQKLFTWQLSLGQYTTTGTGPNKKMARNTAAEQMMATLPEEWKQKAGKVKKRG 1260
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592938622|gb|GAXK01019931.1| (TSA: Calanus finmarchicus comp13739_c10_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 2.801e-2 Identity = 35/102 (34.31%), Postives = 49/102 (48.04%), Query Frame = 0
Query: 92 KVLEEAPNEQQQEDASPEK----PIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVXXXXXXXXXXXXXXEDMARKLDKLP 189
KVL++ P + P P E E ++ I +E + RN + +E V E GPPHM+ F +GD N KK +K +AAE M KL +LP
Sbjct: 1506 KVLKDLPIPDGKSKLDPTSLPFIPGSEYDELKSPISLAHEIALKRNLQVYFEVVRETGPPHMRTFITKCIVGDFVTEGEGNGKKVSKKRAAELMLDKLKQLP 1811 HSP 2 Score: 33.4982 bits (75), Expect = 5.206e-1 Identity = 15/42 (35.71%), Postives = 21/42 (50.00%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGD 160
+ + NE ++ ++ E GP H K FT CLKIGD
Sbjct: 993 KTPMCLVNELARYNKVGHQYRLTDESGPAHKKTFTVCLKIGD 1118
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592819214|gb|GAXK01135354.1| (TSA: Calanus finmarchicus comp240376_c2_seq1 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.335e-1 Identity = 16/41 (39.02%), Postives = 27/41 (65.85%), Query Frame = 0
Query: 121 AIVFCNEQ-SKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGD 160
A+ NE S+++ S+++E SE G P+ KVFT +K+G+
Sbjct: 140 ALQLVNEMASRMKMSSLDFELTSEVGTPNDKVFTMTVKVGE 262
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Match: gi|592819213|gb|GAXK01135355.1| (TSA: Calanus finmarchicus comp240376_c2_seq2 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 1.557e-1 Identity = 16/41 (39.02%), Postives = 27/41 (65.85%), Query Frame = 0
Query: 121 AIVFCNEQ-SKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGD 160
A+ NE S+++ S+++E SE G P+ KVFT +K+G+
Sbjct: 104 ALQLVNEMASRMKMSSLDFELTSEVGTPNDKVFTMTVKVGE 226
BLAST of EMLSAG00000001345 vs. L. salmonis peptides
Match: EMLSAP00000001345 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:15906:17054:-1 gene:EMLSAG00000001345 transcript:EMLSAT00000001345 description:"augustus_masked-LSalAtl2s1228-processed-gene-0.1") HSP 1 Score: 448.743 bits (1153), Expect = 1.240e-161 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query: 1 MNNKRRDRNNYGVGGGGGGGYNFPSWNYGCTLENNTQTGAFETFYNGVRESKRHEVPIASPVPPPSLSLPSATTSSQKSGSTPSQNEDSQKKVLEEAPNEQQQEDASPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKAKKRAHPFQMMGYPPPMMYGMNPMM 215
MNNKRRDRNNYGVGGGGGGGYNFPSWNYGCTLENNTQTGAFETFYNGVRESKRHEVPIASPVPPPSLSLPSATTSSQKSGSTPSQNEDSQKKVLEEAPNEQQQEDASPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKAKKRAHPFQMMGYPPPMMYGMNPMM
Sbjct: 1 MNNKRRDRNNYGVGGGGGGGYNFPSWNYGCTLENNTQTGAFETFYNGVRESKRHEVPIASPVPPPSLSLPSATTSSQKSGSTPSQNEDSQKKVLEEAPNEQQQEDASPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKAKKRAHPFQMMGYPPPMMYGMNPMM 215
BLAST of EMLSAG00000001345 vs. L. salmonis peptides
Match: EMLSAP00000002431 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1464:38656:42603:-1 gene:EMLSAG00000002431 transcript:EMLSAT00000002431 description:"maker-LSalAtl2s1464-augustus-gene-0.13") HSP 1 Score: 67.0106 bits (162), Expect = 3.185e-13 Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 0
Query: 115 ILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKAKKRA 195
+LEG+N I+ NE + EW VS++G PH + FTW LK+GD VV + +SKK AK AA M L+ +P+ K+A
Sbjct: 258 LLEGKNVIMALNEIAMTNGLCPEWNMVSDQGLPHQRTFTWSLKLGDHEVVGTGSSKKVAKTTAANQM---LNIIPEEWKKA 335
BLAST of EMLSAG00000001345 vs. SwissProt
Match: gi|73919457|sp|Q7ZW47.2|STAU2_DANRE (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2) HSP 1 Score: 55.0694 bits (131), Expect = 8.420e-8 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVYEIALKRNLPVNFEVLKESGPPHMKSFLTRVTVGEFSAEGEGNSKKLSKKRAALSILQELKKLPVLPVVEKPKVHYKKRPKTILKTGPEYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. SwissProt
Match: gi|73919460|sp|Q68SB1.1|STAU2_RAT (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2; Short=r-staufen protein) HSP 1 Score: 53.9138 bits (128), Expect = 2.127e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. SwissProt
Match: gi|73919459|sp|Q8CJ67.1|STAU2_MOUSE (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2) HSP 1 Score: 53.5286 bits (127), Expect = 2.635e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPDYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. SwissProt
Match: gi|73919458|sp|Q9NUL3.1|STAU2_HUMAN (RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2) HSP 1 Score: 53.5286 bits (127), Expect = 2.813e-7 Identity = 33/104 (31.73%), Postives = 51/104 (49.04%), Query Frame = 0
Query: 119 RNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKL--------PKAKKRAHPFQMMGYPPPMMYGMNPM 214
++ I E + RN + +E + E GPPHMK F + +G+ S NSKK +K +AA + ++L KL PK + P ++ P GMNP+
Sbjct: 206 KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPI 309
BLAST of EMLSAG00000001345 vs. Select Arthropod Genomes
Match: gb|EFA11564.2| (staufen [Tribolium castaneum]) HSP 1 Score: 61.6178 bits (148), Expect = 2.792e-10 Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + RN S+ +E +SE+GPPHMKVF ++G+ N KK +K +AAE M +L KLP
Sbjct: 308 ELKSPISLVHEIALKRNLSVTFEVLSEKGPPHMKVFVTQCRVGNFVAEGEGNGKKISKKRAAEKMLEELAKLP 380
BLAST of EMLSAG00000001345 vs. Select Arthropod Genomes
Match: gb|KYB29818.1| (staufen [Tribolium castaneum]) HSP 1 Score: 61.6178 bits (148), Expect = 2.894e-10 Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + RN S+ +E +SE+GPPHMKVF ++G+ N KK +K +AAE M +L KLP
Sbjct: 303 ELKSPISLVHEIALKRNLSVTFEVLSEKGPPHMKVFVTQCRVGNFVAEGEGNGKKISKKRAAEKMLEELAKLP 375
BLAST of EMLSAG00000001345 vs. Select Arthropod Genomes
Match: EAA04622.5 (AGAP007478-PA [Anopheles gambiae str. PEST]) HSP 1 Score: 59.6918 bits (143), Expect = 1.513e-9 Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKAKKRAHP 197
E ++ I +E + R+ S+ +E +SE+GPPHM VF K+G I KK +K +AAE M +L KL KA+++ +P
Sbjct: 744 ELKSPISLVHEIAVQRSLSVVFEVISEKGPPHMTVFVTQCKVGTIVTEGEGTGKKLSKKRAAEKMLEELRKLQKAEQQLNP 824
BLAST of EMLSAG00000001345 vs. Select Arthropod Genomes
Match: gb|KFM77620.1| (Double-stranded RNA-binding protein Staufen-like protein, partial [Stegodyphus mimosarum]) HSP 1 Score: 59.3066 bits (142), Expect = 1.665e-9 Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 0
Query: 107 SPEKPIQEILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
SPE E + ++ I +E + R+ ++ +E E GPPHM+ F +GDIS N KK +K +AAE M +L KLP
Sbjct: 302 SPEDDGDESDDLKSPISLVHEIALKRSLAVNFEVTRESGPPHMRTFVTRCTVGDISTDGEGNGKKVSKKRAAEKMLEELKKLP 384
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1059388207|ref|XP_017769294.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X2 [Nicrophorus vespilloides]) HSP 1 Score: 65.855 bits (159), Expect = 4.891e-9 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R+ ++ +E SE GPPHMKVF KIGD SV N KK +K +AAE+M +KL +LP
Sbjct: 345 ELKSPISLVHEIALKRHLNVSFEVKSENGPPHMKVFVTQCKIGDCSVEGEGNGKKVSKKRAAEEMLKKLSQLP 417
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1059388205|ref|XP_017769293.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2 isoform X1 [Nicrophorus vespilloides]) HSP 1 Score: 65.855 bits (159), Expect = 5.063e-9 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R+ ++ +E SE GPPHMKVF KIGD SV N KK +K +AAE+M +KL +LP
Sbjct: 366 ELKSPISLVHEIALKRHLNVSFEVKSENGPPHMKVFVTQCKIGDCSVEGEGNGKKVSKKRAAEEMLKKLSQLP 438
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1000209802|gb|KXJ79917.1| (hypothetical protein RP20_CCG027552 [Aedes albopictus]) HSP 1 Score: 63.1586 bits (152), Expect = 4.192e-8 Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKA 191
E ++ I +E + R S+++E E+GPPHMKVFT K+G I N KK +K +AAE M +L KLP A
Sbjct: 556 ELKSPISLVHEMALKRKLSVQFEVHGEKGPPHMKVFTTLCKVGSIVTEGEGNGKKLSKKRAAEKMLDELKKLPPA 630
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1121119623|ref|XP_019548739.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Aedes albopictus]) HSP 1 Score: 63.1586 bits (152), Expect = 4.559e-8 Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKA 191
E ++ I +E + R S+++E E+GPPHMKVFT K+G I N KK +K +AAE M +L KLP A
Sbjct: 602 ELKSPISLVHEMALKRKLSVQFEVHGEKGPPHMKVFTTLCKVGSIVTEGEGNGKKLSKKRAAEKMLDELKKLPPA 676
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1121088105|ref|XP_019525695.1| (PREDICTED: double-stranded RNA-binding protein Staufen homolog 2-like [Aedes albopictus]) HSP 1 Score: 63.1586 bits (152), Expect = 4.618e-8 Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLPKA 191
E ++ I +E + R S+++E E+GPPHMKVFT K+G I N KK +K +AAE M +L KLP A
Sbjct: 557 ELKSPISLVHEMALKRKLSVQFEVHGEKGPPHMKVFTTLCKVGSIVTEGEGNGKKLSKKRAAEKMLDELKKLPPA 631
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1134476603|gb|JAV27838.1| (putative double-stranded rna-binding protein staufen log 2, partial [Culex tarsalis]) HSP 1 Score: 63.1586 bits (152), Expect = 4.668e-8 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R ++++E SE+GPPHMKVFT K+G+I N KK +K +AAE M +L KLP
Sbjct: 503 ELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKVGNIVTEGEGNGKKISKKRAAEKMLDELRKLP 575
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1134476635|gb|JAV27854.1| (putative double-stranded rna-binding protein staufen log 2 [Culex tarsalis]) HSP 1 Score: 63.1586 bits (152), Expect = 4.709e-8 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R ++++E SE+GPPHMKVFT K+G+I N KK +K +AAE M +L KLP
Sbjct: 549 ELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKVGNIVTEGEGNGKKISKKRAAEKMLDELRKLP 621
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1134476579|gb|JAV27826.1| (putative double-stranded rna-binding protein staufen log 2 [Culex tarsalis]) HSP 1 Score: 62.7734 bits (151), Expect = 4.843e-8 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R ++++E SE+GPPHMKVFT K+G+I N KK +K +AAE M +L KLP
Sbjct: 549 ELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKVGNIVTEGEGNGKKISKKRAAEKMLDELRKLP 621
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1134476573|gb|JAV27823.1| (putative double-stranded rna-binding protein staufen log 2 [Culex tarsalis]) HSP 1 Score: 62.7734 bits (151), Expect = 5.462e-8 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R ++++E SE+GPPHMKVFT K+G+I N KK +K +AAE M +L KLP
Sbjct: 550 ELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKVGNIVTEGEGNGKKISKKRAAEKMLDELRKLP 622
BLAST of EMLSAG00000001345 vs. nr
Match: gi|1134476535|gb|JAV27804.1| (putative double-stranded rna-binding protein staufen log 2 [Culex tarsalis]) HSP 1 Score: 62.7734 bits (151), Expect = 5.888e-8 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
Query: 117 EGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E ++ I +E + R ++++E SE+GPPHMKVFT K+G+I N KK +K +AAE M +L KLP
Sbjct: 549 ELKSPISLVHELALKRKMAVQFEVHSEKGPPHMKVFTTICKVGNIVTEGEGNGKKISKKRAAEKMLDELRKLP 621
BLAST of EMLSAG00000001345 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold243_size241480-processed-gene-0.2 (protein:Tk02951 transcript:snap_masked-scaffold243_size241480-processed-gene-0.2-mRNA-1 annotation:"double-stranded rna-binding protein staufen-like protein 2") HSP 1 Score: 54.6842 bits (130), Expect = 3.853e-9 Identity = 25/76 (32.89%), Postives = 42/76 (55.26%), Query Frame = 0
Query: 114 EILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E+ + ++ I +E + RN ++ +E + E GPPHM+ F +GD N KK +K +AAE M +L ++P
Sbjct: 532 ELDDLKSPISLVHESALKRNMTVVFEVIRETGPPHMRTFITKCTVGDEVTYGEGNGKKASKKRAAELMIDQLKQMP 607
BLAST of EMLSAG00000001345 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1024_size69702-snap-gene-0.8 (protein:Tk05379 transcript:maker-scaffold1024_size69702-snap-gene-0.8-mRNA-1 annotation:"double-stranded rna-binding protein staufen-like protein 2") HSP 1 Score: 53.5286 bits (127), Expect = 1.149e-8 Identity = 25/76 (32.89%), Postives = 42/76 (55.26%), Query Frame = 0
Query: 114 EILEGRNAIVFCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKLDKLP 189
E+ + ++ I +E + RN ++ +E + E GPPHM+ F +GD N KK +K +AAE M +L ++P
Sbjct: 532 ELDDLKSPISLVHESALKRNMTVVFEVIRETGPPHMRTFITKCTVGDEVTYGEGNGKKASKKRAAELMIDQLKQMP 607
BLAST of EMLSAG00000001345 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold2236_size18378-snap-gene-0.8 (protein:Tk10366 transcript:maker-scaffold2236_size18378-snap-gene-0.8-mRNA-1 annotation:"double-stranded rna-binding protein staufen homolog 2 isoform x7") HSP 1 Score: 49.2914 bits (116), Expect = 3.496e-7 Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = 0
Query: 124 FCNEQSKLRNWSMEWEQVSEEGPPHMKVFTWCLKIGDISVVASANSKKGAKNKAAEDMARKL 185
N + RN + WE V E GPPH K+FT +G+ + + +SKK AK AA ++ + L
Sbjct: 383 LLNRIAMSRNTPLVWEVVGESGPPHQKIFTLKCVLGEHQAMGTGSSKKLAKTLAASELIKTL 444 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001345 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 13
Pagesback to top
BLAST of EMLSAG00000001345 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
Pagesback to top
BLAST of EMLSAG00000001345 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000001345 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 4
BLAST of EMLSAG00000001345 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 4
BLAST of EMLSAG00000001345 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000001345 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1228:15906..17054- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001345-684111 ID=EMLSAG00000001345-684111|Name=EMLSAG00000001345|organism=Lepeophtheirus salmonis|type=gene|length=1149bp|location=Sequence derived from alignment at LSalAtl2s1228:15906..17054- (Lepeophtheirus salmonis)back to top Add to Basket
|