EMLSAG00000002231, EMLSAG00000002231-684997 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002231
Unique NameEMLSAG00000002231-684997
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002231 vs. C. finmarchicus
Match: gi|592868566|gb|GAXK01088996.1| (TSA: Calanus finmarchicus comp317231_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.480e+0
Identity = 14/25 (56.00%), Postives = 15/25 (60.00%), Query Frame = 0 
Query:   31 GWNKASKCSGSPYSHYQASIQQDLL 55
            GW +AS CSG PYS    S  Q LL
Sbjct:  100 GWRRASTCSG-PYSPTTGSRTQQLL 171
[Close]
BLAST of EMLSAG00000002231 vs. C. finmarchicus
Match: gi|592868567|gb|GAXK01088995.1| (TSA: Calanus finmarchicus comp317231_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.019e+0
Identity = 14/25 (56.00%), Postives = 15/25 (60.00%), Query Frame = 0 
Query:   31 GWNKASKCSGSPYSHYQASIQQDLL 55
            GW +AS CSG PYS    S  Q LL
Sbjct:  100 GWRRASTCSG-PYSPTTGSRTQQLL 171
[Close]
BLAST of EMLSAG00000002231 vs. C. finmarchicus
Match: gi|592886127|gb|GAXK01072248.1| (TSA: Calanus finmarchicus comp996251_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.484e+0
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 0 
Query:   67 FFSLPSLHHYLLKQWAL 83
            FFSLP L ++LL QW L
Sbjct:  454 FFSLPQLFYHLLLQWCL 504
[Close]
BLAST of EMLSAG00000002231 vs. L. salmonis peptides
Match: EMLSAP00000002231 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1422:73382:79384:-1 gene:EMLSAG00000002231 transcript:EMLSAT00000002231 description:"snap_masked-LSalAtl2s1422-processed-gene-0.4")

HSP 1 Score: 182.57 bits (462), Expect = 7.393e-61
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MIPSTTTMKRLTSAVRAKIVKSEDLKSEERGWNKASKCSGSPYSHYQASIQQDLLQPDKCAELPKKFFSLPSLHHYLLKQWALSLRRV 88
            MIPSTTTMKRLTSAVRAKIVKSEDLKSEERGWNKASKCSGSPYSHYQASIQQDLLQPDKCAELPKKFFSLPSLHHYLLKQWALSLRRV
Sbjct:    1 MIPSTTTMKRLTSAVRAKIVKSEDLKSEERGWNKASKCSGSPYSHYQASIQQDLLQPDKCAELPKKFFSLPSLHHYLLKQWALSLRRV 88
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002231 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002231 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592868566|gb|GAXK01088996.1|3.480e+056.00TSA: Calanus finmarchicus comp317231_c0_seq2 trans... [more]
gi|592868567|gb|GAXK01088995.1|4.019e+056.00TSA: Calanus finmarchicus comp317231_c0_seq1 trans... [more]
gi|592886127|gb|GAXK01072248.1|5.484e+064.71TSA: Calanus finmarchicus comp996251_c1_seq1 trans... [more]
back to top
BLAST of EMLSAG00000002231 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000022317.393e-61100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1422:7338... [more]
back to top
BLAST of EMLSAG00000002231 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002231 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002231 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002231 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1422supercontigLSalAtl2s1422:73382..79384 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1422-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002231 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002231EMLSAT00000002231-698078Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1422:73382..79384-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002231-684997 ID=EMLSAG00000002231-684997|Name=EMLSAG00000002231|organism=Lepeophtheirus salmonis|type=gene|length=6003bp|location=Sequence derived from alignment at LSalAtl2s1422:73382..79384- (Lepeophtheirus salmonis)
ATGATTCCATCAACGACAACAATGAAGAGATTGACGGTAAGAAGGAAAAT
AGCGATTCTTTACCTATGACATAAAATATTATATATTATAATAAGTATGA
CTGACGCCTTAAAATCAAATTGTGTTTTTATTGGTTAAAAAGCTATACAA
TATAGGAATGACTCAACCTTTTATGCTACAACGCAGTTAGCAGTACATAT
GTTTTCTTCTATATTTGTTTCGTGTGAACTCAATATGAGCTTAAAAGAAT
AAGATCATGTTTAATATATTATTATATATTTTACTTATTTCTTTCAAATT
TTCCAATTTCTCAATTTTTTATCAATTTCAAGTATATAATGTGAGTGTTG
GTGTTGAATGCGAAAGGTTCTCCGAGAAAGTAAAAAAACACTAGCCATAA
AAGAATAAAATTGCAGTCTGCAGTTAGAGCTAAAATTGTCAAAAGTGAAG
ACTTGAAATCTGAAGAAAGAGGTTAAAGCTTTGCAATTTAAAATATGCAT
TCCAATATACTCTTGAACTGACTCAAGCTCAAGTGATAAGACTCCTCATC
CTACAATATAAACATAAGAAAAACAAATTTCATTAAATGTTTTTACAGTA
TGTGAAAAATATTTGCAAAATAAAAAAGTGTCCTAGATATGTTTATATAA
ATCGGTATAAATTAGTGAGTTGTCTGCATACAAATTCATTCTATCTAGTT
TGCAAATAGCAAATCTAACATTTTGAGCTAAGTTCGTTGTAATCTTAGAG
TAAGATAATAATTTGGAGAGCGTTACCCATATATTCGTTACGCCATTAAA
ATGTAATGAAAGGTTTTGCTGAAACCTTGTTTACAGGTTTTGATAACATA
TTTTTTCCCCTACTATTGCAAATATAAAATTATTTGTGTATTTGTCAATC
CATCTCCTGAATCCAAGATTTGCCGCCCTAGCTGTACTATTAAGACATTT
TGGTCTAGACCATGATTTAAATTTAATTTATAGCTATCGGTAGTTATTTG
CTTTTAATAAAATATGATATTAATACAATAGACTTGGTTAATAACTCCTA
TTTTATGTCATAGGAAGCTATACATATCAAATTATATCAACTTTTTCCTC
TTCGGATTCAGATACTAACCTTATGCCTATGTTAAATGGAAATGATGATG
GATGATTAACTCTTTCAGCTACAATGTGTAATGCATTAGTTCCTCTAATT
CAGCTAATTTATCTGGATGTGATTGCCCCTCATCAATCGGAAGTATTTCA
ACTCTATTTCCGTCTAGATCAGCCATCACGTCCTTAAACATAAAGTTCGT
CATACAATTGAATTTTAGGAAAAACTTTACTGTGATTTTCTTTTCAGCCT
CCAGTATCTGTCTAACACTGATATTAGCTCCGCTTAATTGTCTATACCAT
CTTTATCTTCCCTTTATGTTGTCAGGGTGGAACAAGGCAAGCAAATGTAG
TGGAAGTCCTTATTCTCACTATCAAGCAAGTATACAGCAAGATCTCCTTC
AGCCAGACAAGTGTGCTGAATTGCCAAAAAAGTTTTTTTCATTACCCTCC
CTTCACCACTATCTTCTCAAACAGTGGGTAAGTGGCCAAACTCTTTGAGA
AAGGACAAACCAGTGGAATTTTGCTTTTTTGAAATTGTCATTTCAAAACT
GTCATTCAAGGAATTGTCTGTTTGTTCATTTGGGAAATAGTCTTGGAGCC
TTGAAGACCTGTTTCTCTAAAATTTATTTTTGTGAACTTGTAGTCTTTCA
TAGTAAATTTTTGTTGAAACTTCTGTCCTCCAACTCCAAAATCCTACCAA
TGATGAAATAACAAACTATTGTTTGTCGTTTCATTTATCTATTTTTTTCT
TACTGTTTATTAAATTAATGTTGCTTGATCATATAGTGGTTTGTTGATTA
ATTAAATTTCTTAAATTTAAGTGCATGCGAAAATAGACTTCAAAAAATGT
ATTATCAATCTGACAAATATTATTTAAATATGGTTATGGATCCATTTTAT
ATGCATTGAAATACTTGTAAAAGCAAGAATATTTTGATTATTCTTTATGT
GTAATAGGATGGCAACCGGAACACATCTTTTTTGAATCCTGACATAACGT
CCATGATCGTCTTTCATTAACGCTTTCACCTACTGAATTTTTTGTTGTAG
ATAGATGATCCTTTTTTTTGCAATCTTTCTTGATATTTTGTGGCAAGTTT
TTTTCTATGAAAAAGTAAACATATCGTAATACAATCCAAATGTTTAAAAT
ATGAGTTCCAGAAACTGAAAATATAATATTATTACGTATGTTAACTATAT
CATATTTATTAAAATAACTCTTAGTACACTTACAAGTTGCTGATTGTCCG
TTTTTAATCGGAAAATAATCATTGGATCAGCAAATGGGAAGGACTTTATC
ATTCCATACAAATCTGTTATATAGGCCAATTATGGAAATGTTGTTTTCAC
CTGTTTTCATGTTGTAACCCTCATGTGCAACAAAACTCTTAACAATTCTG
TTTTGATAACCATCCCCTTAAAGCTATAAATTAGATCCAGTATTTACCTA
ATATAAAGATGAAAGTCTTATATGTATGTATAATTGACCATATTATTTGA
AAAAACACGTATATCAACATTGAAGATCGGTATAACTAAAATAATTGACT
TACATTAATTCCATATCTGTGATAATATTCTTTACAACTAGCTGTAGATA
GCACACGATCATTGGTTAAGATAACTCCATTACACAGTATTTTTATGTTT
TGTCTGTTTATTATAGGAACATGCCAAGGGAACACATCATTATCAAAATA
TCCCTCATATCTTCATAGCTTAGGCTAGGATTTGACTTATTTATCGTCAG
TAGACAAGTCTTTAACTGAAAAGAAAAAATAAAATTAATATGTTTCTACA
TGTATTTGAAAAAAATAACAAGTTCTACAATATTACCTTATCTAAAATGG
CCTGAGACTCAAGTACTAATACCATATAGACACACTATATAAAGATTGAT
ATTTGTTCACATCTATTCCACAATAAATATTGGTGGAAAACAGAATTACA
ACTAACTCATTTCTAACATATGTATGTACAGTAGGAAATGATAATATTGT
TACCCTAAAGAAAATTTCTTTAGGAGAGCTGMCATCTMCACAGTKTTTCT
GCTTTCAGCCTCTTTCACCCCTTCCATACTCTTTTGGAACCAGTTTCATG
CTTTTTCCAATAGTGCCAGTGGAAAGTCGGCAAATACATGGCATACGTGG
GCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTCAGGCTGGCTTGGMTGTTGTGGG
YGMTCATGTTGGNGYTGTTCTNGACGTCTGACCAACCAAAGTGTCCAGTG
AGCTCAAATGGTGTCACTGAGAAAAGGCTAAAAAGTTGTAAAACTCTTTA
AGCTAAGCCTGGGTCTGTTTGGACTTATAGCTTAGTGCATAGTCCTTCTG
CCACATCCATGGCTTMCCKACGMCCKCKTAATAKGCTATTTGTTCACTAC
ACTCTTTAGCACGTCCAGGTACACCCCTACAAATGTTTTTTTGGGCTGCA
GCGTCTCMGAGGTAGGTGAAATTCTTCCKCCGCCGTTTTCCAGAGCAAAA
GAAACCCATCTAATATCCAAAATATACCCATACTCTCAGTTTACATAGTG
CTAGAAATGCTGAAATGCTAAAGAATGCCCCGAGGACGCAAAAAATTTGG
AACTATATCATCTAATATTGTTGCTGTTAATTTGGATGATAAGAGGTAAA
TTACTTCTATTTTTTTTGTCATATCTGGAATAGCATTTTCGAATAGTTTT
ATATCTAATTAAATTACGTGCAAAATAAACTAGTCTGCTGTCTTTCCAAA
AAGTTAATGCTTTATCATCATCAATATCAGTACAGTTCATTTTTCCTCTT
TTAACTAAATCAAAGATTCCTTTTTTGATGGTAGGGAAATTGAATGGAGT
CTATTGAATCTCAATGTKCCTACCACTACAACTTTTTTTATCTCTCAAGT
TGTGAATGATGTATAAACTTTAAAAAAAAGTTACATGCCCTCTATACTAC
TGGAGGATACTTTTACTTTATCAATTAGATTCTATAAAACATCCAGCTTT
GTCCAAATCCATAACTATTTTATTGCATTTTGGCTCCACATAAAATATGC
AATGAAAAAGCCGGCTGGAAGATGTAGATAAAACCTAATTCGTATTAGCC
TTGCCTTGGGGCATTCTTTCATACTAGAAGATTCATAGTATTGGAGTATC
GATTCATCCACATAAATATATTTAGAAGTTTTCACATATTTTTTCCAAGT
TTTGTTTAAGGTTTTCATCTAGAGGGTTAATCACCAAAAATGAAAAAATC
TCTTGAAAATTTAATTTTTTGATATCTATGTATAATCATGAAATAATACA
TTTCAACAATTATGATAATAAATTAATAGTAAGGTTTCTCTAAATTTACT
TCAAAATAACAGCATTGGTAAAAGTAAGAAAAAAAAAAATATTTCAATGT
CACATCCCAATCATACAAATTTCAACAAAATTAAAAAATAACATTAGTCA
AGCTCTTGCAAAAATATTTTTTGTAAGAGGCACATACCAATAACTAATTC
TATAACATTAAATTCTATACTATATACACTTTTTATAGCTCAGAATGTTT
GTAAAGATCTACAAGAAAGTTAAAATGAAAGTTATGTTGATGGCTTTTTG
TAACCTAGAATATGACATTAGTCGACTTAATTCTTCAACTAGTAAGATCC
AACGAACAAATCATTAAATACATAGATTATTTTATACGTTCACACAATAT
CAACCAGATAAATAACAAATCATTGCATACAACAAACATAATAATACAGC
CAAATAGCTAAAAAAAAACATTTCAAAAACGTAAATTTAACGTACATATA
TATGGGTTACATTTTTATATATCAATATCATTGTAATTTGTATAATTTTT
CACTTCTAAGTCTCTAAAGAAAAATGACATTTTCATCATTATACTCGATT
TTATTCAATGGTATCTGTTTTGAAATTGTTCAAAATAAGAGTTAAGGTTA
TTGTTCATAACATACGTCTAAAATGCTTATTTTAGTCAAATGTTCTGGAT
CCGAATATATTAGATATTTGTTAATGTTAGTGCTAAAATTNAGAAGGACT
TACTTTTTTTCAAATGTTTATATTATTTTAAATAAGATATTTGATAAATA
AAAAGTGAGTTCAGTAGTATTATAATTTCTTACGAGGTATTAAGAAGCAT
TATATGTCTATACCTTGCTATGTTTAGTTTGTTTTTGTCATTCTTTATCA
AGGGATCAGAGTTAAATCTCCTTCACTTATAAGTTTTTTAAACATAAGGT
CCGAATATCTGGTTAAGAACTTCAAAGATGGGACTTAACTTTTCCAAAAA
TATCTACAAAAATTTCAAAAGCCAAGACCGATAACCCTGGCAATTTAAAT
TTGTTCTTATGATTCATTATATATTCTTAGATTTCTAGATTTTTTTAGCA
ATTACATCTATGGAGATTCGAGTAAAATAAAAAGATTTATTGTGTAGTTT
GTGTGGAGACTTCAGTTACAACTCCATAGGCCCGTTTTAATGCAACAATT
TTTCTTTCTTTGCTTTCTTTTAAAAATTTCAATTTATTAATTGAAATTTT
TCTAAGTATTAGTTCTTGTTACTTAAAAATATTTTAGCAAAAAAAGTTTT
ACAGGACAAATATTCAAGTATCGGGAGAGTAACTTTAAGAAAAAAGAGAA
ATAAAGAGATTTATAATTGAAAATAAAGTTGATGATGACAGTCCAACATA
AAATAAGTTCTACTTTATATTTAAAAATATTTACGTGTCTTTTTTTGGGA
CTTAGAGAGGAATATAATGAAGATGAATTACTCATTCTACATTTGAGAAA
AATAAATATATATTTTTCTTTCCCATTAGGCTCTGAGTCTCAGAAGAGTC
TGA
back to top
Add to Basket