EMLSAG00000002312, EMLSAG00000002312-685078 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002312
Unique NameEMLSAG00000002312-685078
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592839146|gb|GAXK01118398.1| (TSA: Calanus finmarchicus comp124649_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.975e-1
Identity = 16/46 (34.78%), Postives = 30/46 (65.22%), Query Frame = 0
Query:   84 SIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDE 129
             +I  +  ++  Y WLCVVS+ QIL+ +  LG ++V+ +L + +D+
Sbjct: 2047 GVIGAIWTVILFYVWLCVVSHYQILREISNLGSDQVK-VLQEWEDD 2181          
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592839147|gb|GAXK01118397.1| (TSA: Calanus finmarchicus comp124649_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.002e-1
Identity = 16/46 (34.78%), Postives = 30/46 (65.22%), Query Frame = 0
Query:   84 SIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDE 129
             +I  +  ++  Y WLCVVS+ QIL+ +  LG ++V+ +L + +D+
Sbjct: 2501 GVIGAIWTVILFYVWLCVVSHYQILREISNLGSDQVK-VLQEWEDD 2635          
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592812989|gb|GAXK01141579.1| (TSA: Calanus finmarchicus comp191763_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.694e+0
Identity = 20/60 (33.33%), Postives = 34/60 (56.67%), Query Frame = 0
Query:  106 QILKAMQKL---GLNEVQSILNKNQDEDDDDTNSIVVSHS-NLGKDIVPNSNSFLEPIGA 161
            Q LKAM +L     +E++ + +KNQ ED+DD N I    +    + I+P++ +  +P  A
Sbjct: 2229 QSLKAMSRLHTLPASEIKDVDDKNQIEDEDDKNQIEFKTAIESNEQIIPSTKTRKKPKNA 2408          
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592849872|gb|GAXK01107672.1| (TSA: Calanus finmarchicus comp888100_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.066e+0
Identity = 18/51 (35.29%), Postives = 30/51 (58.82%), Query Frame = 0
Query:   92 LVAAYFWLCVVSYV-QILKAM----QKLGLNEVQSILNKNQDEDDDDTNSI 137
            L+A + +LC++ YV  I K+     ++LGLNE ++    N   +DD+ N I
Sbjct:  158 LIAKFIFLCLIVYVLSIFKSTEIESEELGLNEAENQEMDNAPINDDNRNKI 310          
BLAST of EMLSAG00000002312 vs. L. salmonis peptides
Match: EMLSAP00000002312 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1096793:1098075:1 gene:EMLSAG00000002312 transcript:EMLSAT00000002312 description:"maker-LSalAtl2s143-snap-gene-10.15")

HSP 1 Score: 326.635 bits (836), Expect = 3.137e-115
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMAVDNVNVVAKSIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDEDDDDTNSIVVSHSNLGKDIVPNSNSFLEPIGAY 162
            MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMAVDNVNVVAKSIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDEDDDDTNSIVVSHSNLGKDIVPNSNSFLEPIGAY
Sbjct:    1 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMAVDNVNVVAKSIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDEDDDDTNSIVVSHSNLGKDIVPNSNSFLEPIGAY 162          
BLAST of EMLSAG00000002312 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1405_size42915-snap-gene-0.6 (protein:Tk12177 transcript:maker-scaffold1405_size42915-snap-gene-0.6-mRNA-1 annotation:"hypothetical protein CARUB_v10028444mg partial")

HSP 1 Score: 49.6766 bits (117), Expect = 4.567e-8
Identity = 49/213 (23.00%), Postives = 84/213 (39.44%), Query Frame = 0
Query:    1 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMA-----VDNVNVVA---------------KSIIQFVILLVAA--------------------------------------YFWLCVVSYVQILKAMQKLG---LNEVQSILNKN-----QDEDDDDTNSIVVSHSNLGKD 147
            M VM+TF GC S +SG + +L++  +  + GI Y  +  +E +    +   L+ +   C     K+ + CN++A     ++ V +VA                 + +F +L++ +                                      Y WLCVVS+ QIL+ + KLG   L  VQ   N++      DED+  T   +    N  +D
Sbjct:    1 MAVMKTFCGCLSTRSGAMTVLLLYVVAYIAGIVYFSLQLSEDQFLVWYNAELAKDGNNCKTGDRKDAWWCNLIADTKADINTVLIVAIILCAVLLIVAIIAIIGVSKFALLVIVSVLFALTIILMSVYWPEEEDSSLVIASGIIGAAITALLFYVWLCVVSHFQILREIAKLGLASLEHVQPFHNEDGDTIFGDEDNYPTKDTMAEDYNPQED 213          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002312 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002312 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592839146|gb|GAXK01118398.1|1.975e-134.78TSA: Calanus finmarchicus comp124649_c1_seq2 trans... [more]
gi|592839147|gb|GAXK01118397.1|2.002e-134.78TSA: Calanus finmarchicus comp124649_c1_seq1 trans... [more]
gi|592812989|gb|GAXK01141579.1|2.694e+033.33TSA: Calanus finmarchicus comp191763_c1_seq1 trans... [more]
gi|592849872|gb|GAXK01107672.1|5.066e+035.29TSA: Calanus finmarchicus comp888100_c0_seq1 trans... [more]
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BLAST of EMLSAG00000002312 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000023123.137e-115100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s143:10967... [more]
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BLAST of EMLSAG00000002312 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002312 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002312 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002312 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1405_size42915-snap-gene-0.64.567e-823.00protein:Tk12177 transcript:maker-scaffold1405_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s143supercontigLSalAtl2s143:1096793..1098075 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s143-snap-gene-10.15
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002312 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002312EMLSAT00000002312-698159Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s143:1096793..1098075+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002312-685078 ID=EMLSAG00000002312-685078|Name=EMLSAG00000002312|organism=Lepeophtheirus salmonis|type=gene|length=1283bp|location=Sequence derived from alignment at LSalAtl2s143:1096793..1098075+ (Lepeophtheirus salmonis)
CAAACATTGATATTTCTCTCAGTAGGTCTTTGAACACAATCAACATGGTG GTGATGAGAACATTCCTTGGATGTTTCTCGGTCCAATCCGGGACTCTGGG GATACTGGTCATCACAAATGTAAGAAAGGGAGGACTCAAAGAAAACAATT TTTACAAACTATTTTCTCCTTCAATTATTGTCTTAATAGCTCCTTCTTCT GGGAGGGATCGCTTATATTGGGATCAACTACAACGAAACAGAAGTGGGAG ACAATTGGGCTCTCTTCCTAAGCGATGAAACCAAGGTTTGTGATATGAAA GTAGACAAAAATGACTTTCATTGTAATGTCATGGCGGTGGTTAAAAGCAG MAAGAATAGATTATTTGTTGCTTTTTCCATATAACTAATCCGTAATCTCC ATTACCACACGATTAGAATATATTCTTATTCTACTACTCACGATATCCGT CATCTTTTTCCTTTGTGGAGTATTAGGGCTCTTTGGTTACTGTATGGTAA GGCCTATACAAGTATTTGCAAGTATATTTACGATCCTTTTGAATATATTT TTTTTATTTCTATGTCACTCTGTCAACTCACAAAGCATTCCATTAATTTT ATCATGGTATGGATCGTGGCAGSTTTRATCATCCTTCTCATATTCTTTAT TATAACTGTTCTWACTGTGACTCTTCAATCTCTCTTCCTCCCAAACGGAG AGGATAATGTAAATGTCGTAGCAAAGTCCATCATTCAATTTGTAATCCTA CGTAATTTATATTCTAATGTGTAGAAAACAAATGTCTAATGTACCCTCTC TTTTCGTCAATTAGTGGTTGCAGCCTACTTTTGGCTCTGTGTTGTGAGCT ACGTTCAAATCCTCAAGGCAATGCAAAAGCTCGGTCTGAATGAGGTGCAG AGCATACTAAACAAAAACCAAGATGAGGATGATGATGATACAAATAGCAT CGTTGTCTCACACTCGAATTTAGGAAAGGATATTGTTCCAAATTCAAATT CGTTCCTAGAGCCTATCGGTGCCTATTAAGGGATATACATAGTATATAGT TTTTTACTTAAAAGCATCAAATTCATTGATCGAATCATTTTATGTATTAT ATCTACGATAAAATTGTCATTGTTCGTTGACTACAATGATTTATTATAGA GAGTTAATGTTTATATTCGGATGCCCAGATTAAATGATCCAGAATCAACG GTGTCCATGTTTTTCATTATGTATCTACAAGTGTCTACTCGTTTCACCAT ACCATGTATCTGCCATTTCCTTTAGCACAGTGT
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