EMLSAG00000002312, EMLSAG00000002312-685078 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592839146|gb|GAXK01118398.1| (TSA: Calanus finmarchicus comp124649_c1_seq2 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.975e-1 Identity = 16/46 (34.78%), Postives = 30/46 (65.22%), Query Frame = 0 Query: 84 SIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDE 129 +I + ++ Y WLCVVS+ QIL+ + LG ++V+ +L + +D+ Sbjct: 2047 GVIGAIWTVILFYVWLCVVSHYQILREISNLGSDQVK-VLQEWEDD 2181
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592839147|gb|GAXK01118397.1| (TSA: Calanus finmarchicus comp124649_c1_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 2.002e-1 Identity = 16/46 (34.78%), Postives = 30/46 (65.22%), Query Frame = 0 Query: 84 SIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDE 129 +I + ++ Y WLCVVS+ QIL+ + LG ++V+ +L + +D+ Sbjct: 2501 GVIGAIWTVILFYVWLCVVSHYQILREISNLGSDQVK-VLQEWEDD 2635
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592812989|gb|GAXK01141579.1| (TSA: Calanus finmarchicus comp191763_c1_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 2.694e+0 Identity = 20/60 (33.33%), Postives = 34/60 (56.67%), Query Frame = 0 Query: 106 QILKAMQKL---GLNEVQSILNKNQDEDDDDTNSIVVSHS-NLGKDIVPNSNSFLEPIGA 161 Q LKAM +L +E++ + +KNQ ED+DD N I + + I+P++ + +P A Sbjct: 2229 QSLKAMSRLHTLPASEIKDVDDKNQIEDEDDKNQIEFKTAIESNEQIIPSTKTRKKPKNA 2408
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Match: gi|592849872|gb|GAXK01107672.1| (TSA: Calanus finmarchicus comp888100_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 5.066e+0 Identity = 18/51 (35.29%), Postives = 30/51 (58.82%), Query Frame = 0 Query: 92 LVAAYFWLCVVSYV-QILKAM----QKLGLNEVQSILNKNQDEDDDDTNSI 137 L+A + +LC++ YV I K+ ++LGLNE ++ N +DD+ N I Sbjct: 158 LIAKFIFLCLIVYVLSIFKSTEIESEELGLNEAENQEMDNAPINDDNRNKI 310
BLAST of EMLSAG00000002312 vs. L. salmonis peptides
Match: EMLSAP00000002312 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1096793:1098075:1 gene:EMLSAG00000002312 transcript:EMLSAT00000002312 description:"maker-LSalAtl2s143-snap-gene-10.15") HSP 1 Score: 326.635 bits (836), Expect = 3.137e-115 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMAVDNVNVVAKSIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDEDDDDTNSIVVSHSNLGKDIVPNSNSFLEPIGAY 162 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMAVDNVNVVAKSIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDEDDDDTNSIVVSHSNLGKDIVPNSNSFLEPIGAY Sbjct: 1 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMAVDNVNVVAKSIIQFVILLVAAYFWLCVVSYVQILKAMQKLGLNEVQSILNKNQDEDDDDTNSIVVSHSNLGKDIVPNSNSFLEPIGAY 162
BLAST of EMLSAG00000002312 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1405_size42915-snap-gene-0.6 (protein:Tk12177 transcript:maker-scaffold1405_size42915-snap-gene-0.6-mRNA-1 annotation:"hypothetical protein CARUB_v10028444mg partial") HSP 1 Score: 49.6766 bits (117), Expect = 4.567e-8 Identity = 49/213 (23.00%), Postives = 84/213 (39.44%), Query Frame = 0 Query: 1 MVVMRTFLGCFSVQSGTLGILVITNLLLLGGIAYIGINYNETEVGDNWALFLSDETKVCDMKVDKNDFHCNVMA-----VDNVNVVA---------------KSIIQFVILLVAA--------------------------------------YFWLCVVSYVQILKAMQKLG---LNEVQSILNKN-----QDEDDDDTNSIVVSHSNLGKD 147 M VM+TF GC S +SG + +L++ + + GI Y + +E + + L+ + C K+ + CN++A ++ V +VA + +F +L++ + Y WLCVVS+ QIL+ + KLG L VQ N++ DED+ T + N +D Sbjct: 1 MAVMKTFCGCLSTRSGAMTVLLLYVVAYIAGIVYFSLQLSEDQFLVWYNAELAKDGNNCKTGDRKDAWWCNLIADTKADINTVLIVAIILCAVLLIVAIIAIIGVSKFALLVIVSVLFALTIILMSVYWPEEEDSSLVIASGIIGAAITALLFYVWLCVVSHFQILREIAKLGLASLEHVQPFHNEDGDTIFGDEDNYPTKDTMAEDYNPQED 213 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002312 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002312 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000002312 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000002312 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002312 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002312 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002312 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s143:1096793..1098075+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002312-685078 ID=EMLSAG00000002312-685078|Name=EMLSAG00000002312|organism=Lepeophtheirus salmonis|type=gene|length=1283bp|location=Sequence derived from alignment at LSalAtl2s143:1096793..1098075+ (Lepeophtheirus salmonis)back to top Add to Basket
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