EMLSAG00000002313, EMLSAG00000002313-685079 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002313
Unique NameEMLSAG00000002313-685079
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Match: gi|592852801|gb|GAXK01104743.1| (TSA: Calanus finmarchicus comp157607_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 4.704e-2
Identity = 32/91 (35.16%), Postives = 43/91 (47.25%), Query Frame = 0
Query:   45 RDAXPSYGHS-YSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHV-HRPHNHMHKTEPSYGYGI 133
            R A   YGHS  SY +V+RP+             + Y   ++HP +Y H   KR AEP YG      +YVHV  + H + +     YGY I
Sbjct:    1 RSADAGYGHSGESYQYVNRPY-------------SDYKIEVYHPETYHHGYGKRSAEPGYG-----SAYVHVEQKDHGYGYPESYEYGYNI 219          
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Match: gi|592852800|gb|GAXK01104744.1| (TSA: Calanus finmarchicus comp157607_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 6.566e-2
Identity = 32/91 (35.16%), Postives = 43/91 (47.25%), Query Frame = 0
Query:   45 RDAXPSYGHS-YSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHV-HRPHNHMHKTEPSYGYGI 133
            R A   YGHS  SY +V+RP+             + Y   ++HP +Y H   KR AEP YG      +YVHV  + H + +     YGY I
Sbjct:    1 RSADAGYGHSGESYQYVNRPY-------------SDYKIEVYHPETYHHGYGKRSAEPGYG-----SAYVHVEQKDHGYGYPESYEYGYNI 219          
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Match: gi|592804500|gb|GAXK01150068.1| (TSA: Calanus finmarchicus comp1970348_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.147e+0
Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 0
Query:   46 DAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKR--EAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQ 137
            DA P YG +Y  VHV        + +  YG+  SY         YG+++HKR  +A+P YG+ +   S         +++ T+  YGYG + H+
Sbjct:  109 DAQPGYGSAY--VHV-------EQKDHGYGYPESY--------EYGYNIHKRSADAQPGYGYSNGYGS--------ANVYLTQTDYGYGYNIHR 315          

HSP 2 Score: 28.1054 bits (61), Expect = 7.228e+0
Identity = 26/82 (31.71%), Postives = 39/82 (47.56%), Query Frame = 0
Query:   19 AEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYG----YSIHHPSSYGHSVHK 96
            A+PGY  A  YVHV     +HG          YG+  SY + +  H    +A+P YG++  YG    Y       YG+++H+
Sbjct:  109 AQPGYGSA--YVHVEQ--KDHG----------YGYPESYEYGYNIHKRSADAQPGYGYSNGYGSANVYLTQTDYGYGYNIHR 312          
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000002313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1109625:1110117:-1 gene:EMLSAG00000002313 transcript:EMLSAT00000002313 description:"maker-LSalAtl2s143-augustus-gene-10.13")

HSP 1 Score: 268.47 bits (685), Expect = 6.232e-93
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
            MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH
Sbjct:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144          
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000009658 (pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736:56935:1 gene:EMLSAG00000009658 transcript:EMLSAT00000009658 description:"maker-LSalAtl2s620-augustus-gene-0.8")

HSP 1 Score: 256.914 bits (655), Expect = 2.237e-88
Identity = 136/144 (94.44%), Postives = 137/144 (95.14%), Query Frame = 0
Query:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
            MA KSILISFLALVSIS AEPGYPVAHSYVHVRHGFPNHGHYHKRDA PSYGHSYSYVHV RPHYHKREA+PSY HATSYGYSIHHPSSYGHSVHKRE EPSYGHPHQS SYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH
Sbjct:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144          
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000002339 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1123490:1127377:1 gene:EMLSAG00000002339 transcript:EMLSAT00000002339 description:"augustus-LSalAtl2s143-processed-gene-10.8")

HSP 1 Score: 112.079 bits (279), Expect = 8.622e-32
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58
            MA KSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV
Sbjct:    1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58          
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000001403 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12384:534:1128:1 gene:EMLSAG00000001403 transcript:EMLSAT00000001403 description:"augustus_masked-LSalAtl2s12384-processed-gene-0.0")

HSP 1 Score: 46.2098 bits (108), Expect = 1.049e-7
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 0
Query:   49 PSYGHSYS---YVHVHRPHYHKR--EAEPSYGHATSYGYS-IHHPSSYGHSVHKR--EAEPSYGHPHQ--SHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGH 143
            PSYG+ Y+   Y + HR HY KR  EAEPSYG    YGY+ + +  SYGH   KR  EAEPSYG+ +   ++ Y + H       + EPSYGYG   + P +YG+
Sbjct:   21 PSYGYGYAPVAYGYGHRQHYGKRSAEAEPSYG----YGYAPVAYGYSYGHHYGKRSAEAEPSYGYGYAPVAYGYGYGHHYGKRSAEAEPSYGYG---YAPVAYGY 118          

HSP 2 Score: 46.2098 bits (108), Expect = 1.296e-7
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 0
Query:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKR--DAXPSYGHSY---SYVHVHRPHYHKR--EAEPSYGHATSYGYS-IHHPSSYGHSVHKR--EAEPSYGHPHQSHSY 112
            M   ++ ++  A V ++  EP Y   + Y  V +G+ +  HY KR  +A PSYG+ Y   +Y + +  HY KR  EAEPSYG    YGY+ + +   YGH   KR  EAEPSYG+ +   +Y
Sbjct:    1 MKCIAVXLTLFAAVVVAEPEPSY--GYGYAPVAYGYGHRQHYGKRSAEAEPSYGYGYAPVAYGYSYGHHYGKRSAEAEPSYG----YGYAPVAYGYGYGHHYGKRSAEAEPSYGYGYAPVAY 116          
BLAST of EMLSAG00000002313 vs. nr
Match: gi|155966151|gb|ABU41030.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 57.7658 bits (138), Expect = 2.731e-7
Identity = 63/179 (35.20%), Postives = 87/179 (48.60%), Query Frame = 0
Query:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKR--DAXPSYGHSYS---YVHVHRPHYHKR--EAEPSYGHA----------------------TSYGYS---IHHPSSYGHSVHKR--EAEPSYGHPHQ--SHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGH 143
            M   ++ ++  A V ++  EP Y   + Y  V +G+ +  HY KR  +A PSYG+ Y+   Y + +  HY KR  EAEPSYG+                        SYGY    + +  SYGH   KR  EAEPSYG+ +   S+ Y H H       + EPSYGYG   + P SYG+
Sbjct:    1 MKCIAVALTLFAAVVVAEPEPSY--GYGYAPVAYGYGHRQHYGKRSAEAEPSYGYGYAPVAYGYSYGHHYGKRSAEAEPSYGYGYAPVAYGYGYGHHYGKRSAEAEPSYGYGYAPVAYGYSYGHHYGKRSAEAEPSYGYGYAPVSYGYSHGHHYGKRSAEAEPSYGYG---YAPVSYGY 174          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002313 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592852801|gb|GAXK01104743.1|4.704e-235.16TSA: Calanus finmarchicus comp157607_c0_seq1 trans... [more]
gi|592852800|gb|GAXK01104744.1|6.566e-235.16TSA: Calanus finmarchicus comp157607_c0_seq2 trans... [more]
gi|592804500|gb|GAXK01150068.1|3.147e+030.85TSA: Calanus finmarchicus comp1970348_c0_seq2 tran... [more]
back to top
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000023136.232e-93100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s143:11096... [more]
EMLSAP000000096582.237e-8894.44pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736... [more]
EMLSAP000000023398.622e-3298.28pep:novel supercontig:LSalAtl2s:LSalAtl2s143:11234... [more]
EMLSAP000000014031.049e-744.76pep:novel supercontig:LSalAtl2s:LSalAtl2s12384:534... [more]
back to top
BLAST of EMLSAG00000002313 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002313 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002313 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966151|gb|ABU41030.1|2.731e-735.20hypothetical protein [Lepeophtheirus salmonis][more]
back to top
BLAST of EMLSAG00000002313 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s143supercontigLSalAtl2s143:1109625..1110117 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s143-augustus-gene-10.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002313 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002313EMLSAT00000002313-698160Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s143:1109625..1110117-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002313-685079 ID=EMLSAG00000002313-685079|Name=EMLSAG00000002313|organism=Lepeophtheirus salmonis|type=gene|length=493bp|location=Sequence derived from alignment at LSalAtl2s143:1109625..1110117- (Lepeophtheirus salmonis)
ATGGCAGMTAAATCAATCCTTGTAAGTTATACTGTGTGTATCACAAATCG TCCTTAAATATCCTTTTTTTATTTTACAGATTAGTTTCCTTGCTTTGGTT TCAATCTCAAGGGCAGAGCCTGGATATCCCGTTGCTCATTCTTACGTTCA CGTCCGCCATGGATTTCCTAATCATGGGCATTACCATAAAAGAGATGCTG ANCCTTCCTATGGCCACTCTTATAGTTATGTACATGTTCACCGACCTCAT TATCACAAGCGCGAGGCCGAACCCTCTTATGGACATGCTACCAGCTATGG TTACAGTATTCATCATCCTTCTTCTTATGGTCATTCCGTACACAAGCGTG AGGCTGAACCCTCATATGGACATCCTCATCAATCCCACAGCTATGTTCAT GTCCACCGTCCTCACAATCACATGCATAAGACCGAACCCTCATACGGATA TGGAATCTCACATCATCAACCCAAATCATACGGACATCACTAA
back to top
Add to Basket