EMLSAG00000002313, EMLSAG00000002313-685079 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Match: gi|592852801|gb|GAXK01104743.1| (TSA: Calanus finmarchicus comp157607_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 4.704e-2 Identity = 32/91 (35.16%), Postives = 43/91 (47.25%), Query Frame = 0 Query: 45 RDAXPSYGHS-YSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHV-HRPHNHMHKTEPSYGYGI 133 R A YGHS SY +V+RP+ + Y ++HP +Y H KR AEP YG +YVHV + H + + YGY I Sbjct: 1 RSADAGYGHSGESYQYVNRPY-------------SDYKIEVYHPETYHHGYGKRSAEPGYG-----SAYVHVEQKDHGYGYPESYEYGYNI 219
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Match: gi|592852800|gb|GAXK01104744.1| (TSA: Calanus finmarchicus comp157607_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 6.566e-2 Identity = 32/91 (35.16%), Postives = 43/91 (47.25%), Query Frame = 0 Query: 45 RDAXPSYGHS-YSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHV-HRPHNHMHKTEPSYGYGI 133 R A YGHS SY +V+RP+ + Y ++HP +Y H KR AEP YG +YVHV + H + + YGY I Sbjct: 1 RSADAGYGHSGESYQYVNRPY-------------SDYKIEVYHPETYHHGYGKRSAEPGYG-----SAYVHVEQKDHGYGYPESYEYGYNI 219
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Match: gi|592804500|gb|GAXK01150068.1| (TSA: Calanus finmarchicus comp1970348_c0_seq2 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.147e+0 Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 0 Query: 46 DAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKR--EAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQ 137 DA P YG +Y VHV + + YG+ SY YG+++HKR +A+P YG+ + S +++ T+ YGYG + H+ Sbjct: 109 DAQPGYGSAY--VHV-------EQKDHGYGYPESY--------EYGYNIHKRSADAQPGYGYSNGYGS--------ANVYLTQTDYGYGYNIHR 315 HSP 2 Score: 28.1054 bits (61), Expect = 7.228e+0 Identity = 26/82 (31.71%), Postives = 39/82 (47.56%), Query Frame = 0 Query: 19 AEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYG----YSIHHPSSYGHSVHK 96 A+PGY A YVHV +HG YG+ SY + + H +A+P YG++ YG Y YG+++H+ Sbjct: 109 AQPGYGSA--YVHVEQ--KDHG----------YGYPESYEYGYNIHKRSADAQPGYGYSNGYGSANVYLTQTDYGYGYNIHR 312
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000002313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1109625:1110117:-1 gene:EMLSAG00000002313 transcript:EMLSAT00000002313 description:"maker-LSalAtl2s143-augustus-gene-10.13") HSP 1 Score: 268.47 bits (685), Expect = 6.232e-93 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 Query: 1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH Sbjct: 1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000009658 (pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736:56935:1 gene:EMLSAG00000009658 transcript:EMLSAT00000009658 description:"maker-LSalAtl2s620-augustus-gene-0.8") HSP 1 Score: 256.914 bits (655), Expect = 2.237e-88 Identity = 136/144 (94.44%), Postives = 137/144 (95.14%), Query Frame = 0 Query: 1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVHVHRPHYHKREAEPSYGHATSYGYSIHHPSSYGHSVHKREAEPSYGHPHQSHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144 MA KSILISFLALVSIS AEPGYPVAHSYVHVRHGFPNHGHYHKRDA PSYGHSYSYVHV RPHYHKREA+PSY HATSYGYSIHHPSSYGHSVHKRE EPSYGHPHQS SYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH Sbjct: 1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYVHVRRPHYHKREAKPSYRHATSYGYSIHHPSSYGHSVHKRETEPSYGHPHQSDSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGHH 144
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000002339 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1123490:1127377:1 gene:EMLSAG00000002339 transcript:EMLSAT00000002339 description:"augustus-LSalAtl2s143-processed-gene-10.8") HSP 1 Score: 112.079 bits (279), Expect = 8.622e-32 Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0 Query: 1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58 MA KSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV Sbjct: 1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Match: EMLSAP00000001403 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12384:534:1128:1 gene:EMLSAG00000001403 transcript:EMLSAT00000001403 description:"augustus_masked-LSalAtl2s12384-processed-gene-0.0") HSP 1 Score: 46.2098 bits (108), Expect = 1.049e-7 Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 0 Query: 49 PSYGHSYS---YVHVHRPHYHKR--EAEPSYGHATSYGYS-IHHPSSYGHSVHKR--EAEPSYGHPHQ--SHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGH 143 PSYG+ Y+ Y + HR HY KR EAEPSYG YGY+ + + SYGH KR EAEPSYG+ + ++ Y + H + EPSYGYG + P +YG+ Sbjct: 21 PSYGYGYAPVAYGYGHRQHYGKRSAEAEPSYG----YGYAPVAYGYSYGHHYGKRSAEAEPSYGYGYAPVAYGYGYGHHYGKRSAEAEPSYGYG---YAPVAYGY 118 HSP 2 Score: 46.2098 bits (108), Expect = 1.296e-7 Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 0 Query: 1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKR--DAXPSYGHSY---SYVHVHRPHYHKR--EAEPSYGHATSYGYS-IHHPSSYGHSVHKR--EAEPSYGHPHQSHSY 112 M ++ ++ A V ++ EP Y + Y V +G+ + HY KR +A PSYG+ Y +Y + + HY KR EAEPSYG YGY+ + + YGH KR EAEPSYG+ + +Y Sbjct: 1 MKCIAVXLTLFAAVVVAEPEPSY--GYGYAPVAYGYGHRQHYGKRSAEAEPSYGYGYAPVAYGYSYGHHYGKRSAEAEPSYG----YGYAPVAYGYGYGHHYGKRSAEAEPSYGYGYAPVAY 116
BLAST of EMLSAG00000002313 vs. nr
Match: gi|155966151|gb|ABU41030.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 57.7658 bits (138), Expect = 2.731e-7 Identity = 63/179 (35.20%), Postives = 87/179 (48.60%), Query Frame = 0 Query: 1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKR--DAXPSYGHSYS---YVHVHRPHYHKR--EAEPSYGHA----------------------TSYGYS---IHHPSSYGHSVHKR--EAEPSYGHPHQ--SHSYVHVHRPHNHMHKTEPSYGYGISHHQPKSYGH 143 M ++ ++ A V ++ EP Y + Y V +G+ + HY KR +A PSYG+ Y+ Y + + HY KR EAEPSYG+ SYGY + + SYGH KR EAEPSYG+ + S+ Y H H + EPSYGYG + P SYG+ Sbjct: 1 MKCIAVALTLFAAVVVAEPEPSY--GYGYAPVAYGYGHRQHYGKRSAEAEPSYGYGYAPVAYGYSYGHHYGKRSAEAEPSYGYGYAPVAYGYGYGHHYGKRSAEAEPSYGYGYAPVAYGYSYGHHYGKRSAEAEPSYGYGYAPVSYGYSHGHHYGKRSAEAEPSYGYG---YAPVSYGY 174 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002313 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002313 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000002313 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000002313 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002313 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002313 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000002313 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s143:1109625..1110117- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002313-685079 ID=EMLSAG00000002313-685079|Name=EMLSAG00000002313|organism=Lepeophtheirus salmonis|type=gene|length=493bp|location=Sequence derived from alignment at LSalAtl2s143:1109625..1110117- (Lepeophtheirus salmonis)back to top Add to Basket
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