EMLSAG00000002339, EMLSAG00000002339-685105 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002339
Unique NameEMLSAG00000002339-685105
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002339 vs. C. finmarchicus
Match: gi|592824278|gb|GAXK01130290.1| (TSA: Calanus finmarchicus comp71265_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.626e-1
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 0 
Query:    6 ILISFLALVSISRAEPGYPVAHSYVHVRHGF 36
            +L+SFL L S S A+ G+P+ HS   +R  F
Sbjct:  333 VLLSFLNLCSYSEADLGFPMTHSEKDIRPSF 425
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BLAST of EMLSAG00000002339 vs. L. salmonis peptides
Match: EMLSAP00000002339 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1123490:1127377:1 gene:EMLSAG00000002339 transcript:EMLSAT00000002339 description:"augustus-LSalAtl2s143-processed-gene-10.8")

HSP 1 Score: 274.633 bits (701), Expect = 1.277e-95
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVPISYNANGFILFGHHWPHKCRQPFAKGVASIANEVWVHVSPFLVEGGLHGFYIRXTDVIGQMSIQKEKSRGFLSRLYGG 137
            MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVPISYNANGFILFGHHWPHKCRQPFAKGVASIANEVWVHVSPFLVEGGLHGFYIRXTDVIGQMSIQKEKSRGFLSRLYGG
Sbjct:    1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYVPISYNANGFILFGHHWPHKCRQPFAKGVASIANEVWVHVSPFLVEGGLHGFYIRXTDVIGQMSIQKEKSRGFLSRLYGG 137
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BLAST of EMLSAG00000002339 vs. L. salmonis peptides
Match: EMLSAP00000002313 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:1109625:1110117:-1 gene:EMLSAG00000002313 transcript:EMLSAT00000002313 description:"maker-LSalAtl2s143-augustus-gene-10.13")

HSP 1 Score: 112.079 bits (279), Expect = 8.203e-32
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58
            MA KSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV
Sbjct:    1 MAXKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58
[Close]
BLAST of EMLSAG00000002339 vs. L. salmonis peptides
Match: EMLSAP00000009658 (pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736:56935:1 gene:EMLSAG00000009658 transcript:EMLSAT00000009658 description:"maker-LSalAtl2s620-augustus-gene-0.8")

HSP 1 Score: 111.694 bits (278), Expect = 1.083e-31
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0 
Query:    1 MAVKSILISFLALVSISRAEPGYPVAHSYVHVRHGFPNHGHYHKRDAXPSYGHSYSYV 58
            MAVKSILISFLALVSIS AEPGYPVAHSYVHVRHGFPNHGHYHKRDA PSYGHSYSYV
Sbjct:    1 MAVKSILISFLALVSISSAEPGYPVAHSYVHVRHGFPNHGHYHKRDAEPSYGHSYSYV 58
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002339 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002339 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592824278|gb|GAXK01130290.1|2.626e-145.16TSA: Calanus finmarchicus comp71265_c0_seq2 transc... [more]
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BLAST of EMLSAG00000002339 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000023391.277e-95100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s143:11234... [more]
EMLSAP000000023138.203e-3298.28pep:novel supercontig:LSalAtl2s:LSalAtl2s143:11096... [more]
EMLSAP000000096581.083e-3196.55pep:novel supercontig:LSalAtl2s:LSalAtl2s620:55736... [more]
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BLAST of EMLSAG00000002339 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002339 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002339 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002339 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s143supercontigLSalAtl2s143:1123490..1127377 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
NoteHypothetical protein
Descriptionaugustus-LSalAtl2s143-processed-gene-10.8
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002339 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002339EMLSAT00000002339-698186Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s143:1123490..1127377+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002339-685105 ID=EMLSAG00000002339-685105|Name=EMLSAG00000002339|organism=Lepeophtheirus salmonis|type=gene|length=3888bp|location=Sequence derived from alignment at LSalAtl2s143:1123490..1127377+ (Lepeophtheirus salmonis)
TGCTTCAACCACTAGCGTAAAAATAATACCTACTATGTATGATAAAGGAG
TGATATCACGTCAAAGAAGAAGAGGTGTAGGCCCTTCTCGATAGGACGGA
TGGGTTCATTCATCTTCTTCTATAAAAGAGCTTGTATACTCCGATAAAGA
CACAATTATACGATAGAAACTCAACCAATCAATTAGCTGAGCTTGATTCA
TTCATCATGGCAGTTAAATCAATCCTTGTAAATTATACTGTGTGTATCAC
AAATCGTCGTTAAATATCCTTTTTTTATTTTACAGATTAGTTTCCTTGCT
TTGGTTTCAATCTCAAGGGCAGAGCCTGGATATCCCGTCGCTCATTCTTA
CGTTCACGTCCGCCATGGATTTCCTAATCATGGGCATTACCATAAAAGAG
ATGCTGAMCCTTCCTATGGCCACTCTTATAGTTATGTACCAATTTCTTGT
AAAAAATTCACATCCCCAATATATACCTCACTACCAAAATCTGGAATTGC
ATAACTGTAATTACATAATTATGTTCCATCTAGAGAGTTTAATCGAACTT
TTATTGCAGGTGAGAGACTAAATATGGTCACGTTTCTTACCGTGACTCTT
CTGTTTCTTGCAATTCCATTTTTATAGGCATTTGAATCTTTAAATGACCA
ATTCTTTTACAAATTCTACATTCCTGTTTCCCTGCAGGACATTTATTTAT
AATATGGTCTGTTGAACAGAATATACAATCCATTATTTTTCTTTCAGGAT
GATTTTTCCAAAACTATTTTTGTTTCGACTAAGGCTTTGATCCCTGAATT
TTGCTTTTGTTATCTTGTTGACTTTTACAGAATTTAACTTTCTGTCCTCA
CTCTTCGACATTTCCTGAGCTCGACATCTATCAATAACTTTCTGAAGTGT
ACATTCTTTTTCTTCTATGGCCATAAGCTTTTTCCTTGTTTCTTCATTTT
GAAGTCCCACAATTAATTTAACTTTGATATTTTCTTCTATACAGTTTTTA
TTACAACATCATTCATTTAATTTGGCACGATTTGCTGTTCCAGTTACCTT
TACATAGAAGTCCTCGAAGGATTGACCTTCTTTTTGATACAAGGAATGGA
ATTTAACTTTGTCAAGAATGATATTATATTGAGAAGGAAAATATTTCCTC
AATTCTTTTAAAATTTCAGGGATGGATAACTCTGTGTTTTCTTTTATCCC
AATTGAGACTCTTAATTTCTCCCTCATTACTATATCCATGAATGATCTTA
AATTTGCTAGCTGTTTTGCGTGAGAGTAGCTATCAAGTCCTGCTGGTTGC
CTGTAATCTTCAAAACTGAGTTTCCATTCAATAAACTCATTCAAATCCAT
GTTTCCTTTCAATAATTCTGGTTCCTAATATGTAATTTTTCCGTATACTT
TACACGCTCCATCCTTTGAGAGGAAGATTCTGATCCTCCTTGCCTGCTAG
TTNNATCCATGTTTCCTTTCAATAATTCTGGTTCCTAATATGTAATTTTT
CCGTATACTTTACACGCTCCATCCTTTGAGAGGAGATTCTGATCCTCCTT
GCCTGCTAGTTCCTCCATTTTTTTTGTAAGTTCCTTCATAATTTCTTCAA
CCATACGATCTTTTTCTTCAATGAACATCAAGATATCCTCTTGTTATAAT
TTTAAAATATCCTCTAATCCGTGCAATCTCCCACGGGCTCTTTGATGAGA
AATTTTTAATATTTCAATTCTGTTTGAACGCTTTTGTTCATTAATGCTCC
GTGTGAAATGACCTGTGTATGCCTTAACTTTTGATTTATAAAGTCAAACT
TCTTACTTTTAAGTTTATGTTTCTTAAGATTGATTTTGGTTTATCGTTTG
CGCCATATAATATACGTGGATATGAGATATATGAGGATATGGAGTTTATA
TATAAACTTTATTCTAACATGAGGAGAATCCAGAATGACTCTCATATCAA
TATATTATTAGACATCAAATACACACCGAACATTTATACATAGGTCACTA
AAACTATAGGTATTAAGATATATAACAAGCTCCGAAATATAAGACAAAAA
GTTMTTTAATATCATGGCTAACATTCTATTATAGATATTATATCACAGGT
ATTGAAAAAATGAAAAAAAATGATAGGCTTTATAAATACTGTCCTTAACT
AAAATGAATGGATTGTAATTATTAAACAAATTCGTTTATTCCTAAATATC
TATGGTTATTTTATAAATTTGTTAATATATTTGATTTTTTTTTCCAAGAT
AATAATATGGTTTATTTTTGTCTATCATTATTAAATTCTTCAAAAAAGAA
ACTAAAAAAAAAATCTGTAATTTGTGTCCTCAAACCCAAAAAATTGTATA
AAGGAAAGCATGTTTCCTATCAATATTTTAGAATAAGATTATATAGATTA
AGAAGGATAGAAATCGAAATGTACCTATTAGCCCCATCAAACATATATGT
TTTGGACGTTCCTTATCCTTCATTCACAATAGGTTATGATTAACTTTATA
AAGATAAATCAAATGAGTTTTTCCAATTTATATTGACGTATTAGGAATTG
ATTTAGCTTCAAAAAAGTCCATAGTTAAAAACGTAACAGATTCTCAATGA
TTATTGGCGTATACAATCCTCAAATTGTAATATTTCCGTTTAGTTTGGAC
ATGACTATTAATAATTGAGGTATTTACGGGAAGAGACTCTCCATACAAAT
AGTAAGAGCCCTTATTCAAATACATATTTTGACTTTTTTCANNNNNNNNC
AAATAGTAAGAGCCCTTATTCAAATACATWTTTTGACTTTTTTCAGACTT
TGTAACATATCTACACATATTCCAACCAATTATCACATTGAAGAAGAGGT
ATCATCTGTCCAGTCTAATACCAGATATGATAACAATAAGTCTTTAACAC
GCACCAATATATCAATATTGATTTGTTTCATTTTAATAAAAGCCAAATTA
GGATTTAACTGACGATAATTGATAATCAAACAATTGAGATAGAGATCATT
TCTTGCTGCTAAGATTGTCACTGATGAGTGGTGATTCTAAACAATACTTA
TCAATATAAATCAATCCGTTATGATTAGATAAATATATATTGTTTATCTT
TCCTAATTTGAACTTTTAAGCCAGTATTAAGACGTTTACTCATCCAGCGA
GCAATATACTCTACTCCAGGGAGAAGAAACGAAAATTTATCAATATTTCA
AACTAGATAGACAACAGACAATTAAAGAAGTACCTTGCAATGAACTTGTG
TGAAAACTACATCTTTGAAAACGTTCATACCCCAACTAAGAATCTTGTCT
GATTCCCATATCTTGCACATGATTGTTTCTAAACATATTTTGTTTAGATA
AAAAAGTTTTATCTCTATTCAATCTTCTAAATAACTCCGCTCAGAGATCT
CAAATGGGGCTAAAATTGCAACTCCCTGTTTTTCTTTGATAATCCACTCG
GTTATGTGGTATCGACACACACGCCATAAGGCAGCAAGATCACAATACTT
CTCCAATCTTTTTTGATTTATCGGATCTAGTAGTTTTAATGTTAATGCAT
TAAACCGGACGAAAACTTGAAACTTACACACTTAGAAAAAAAAAAAGTCT
ATTATTCTTTAACTATACATTTAGCAAAAATCATTAATAATCTTTTTCTT
ATACATAGACAACGCAAATGGATTTATTTTATTCGGCCACCATTGGCCTC
ACAAATGTCGACAGCCTTTTGCAAAAGGAGTTGCTAGTATTGCAAATGAA
GTTTGGGTCCATGTCAGCCCATTCCTTGTCGAAGGAGGCCTTCATGGCTT
CTACATTCGGGKGACAGATGTTATAGGACAGATGTCTATTCAGAAGGAAA
AGTCAAGGGGATTCTTATCCAGACTGTATGGAGGCTAA
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