EMLSAG00000002906, EMLSAG00000002906-685672 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002906
Unique NameEMLSAG00000002906-685672
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002906 vs. C. finmarchicus
Match: gi|592793015|gb|GAXK01161553.1| (TSA: Calanus finmarchicus comp35068_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.3654 bits (111), Expect = 5.611e-5
Identity = 27/99 (27.27%), Postives = 53/99 (53.54%), Query Frame = 0 
Query:   30 LNLFTLTWNQLHYLVRESLFNINEIRKENLAILGIMKECFELESCLGDNFIEEQDLFSGDNLNSLDQHGMGALIASLNRQLLSLEEYQKQLRYELNSRK 128
            ++  +L+WNQ+H LV++ +  + E++ E+  I   +  C+ LE CL +   +  D+  G  L SL    M   +++L +Q   + + Q +L  E+  R+
Sbjct:  665 IDPLSLSWNQIHSLVKDQIKEVEELKAEHDEIYNEITGCYGLEKCLAE--FDLLDINPGSKLWSLGLRKMDLSMSALTKQREEVVQTQIRLDAEMRERQ 955
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BLAST of EMLSAG00000002906 vs. L. salmonis peptides
Match: EMLSAP00000002906 (pep:novel supercontig:LSalAtl2s:LSalAtl2s167:132158:137604:1 gene:EMLSAG00000002906 transcript:EMLSAT00000002906 description:"augustus_masked-LSalAtl2s167-processed-gene-1.2")

HSP 1 Score: 826.239 bits (2133), Expect = 0.000e+0
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0 
Query:    1 MSKNILRIVILLFIFDAVRGDTPVVPDEELNLFTLTWNQLHYLVRESLFNINEIRKENLAILGIMKECFELESCLGDNFIEEQDLFSGDNLNSLDQHGMGALIASLNRQLLSLEEYQKQLRYELNSRKELHYKNQVENYMQQGGGRHRHGWSSEGSQGSYSQYGHNQQGFTSSSGSRGGSRQGGSSEHGTQQGHHQQGWPSSSGSRDGSRQGSSSEHGTHREHHQDWSSSSSGSNNQGSSSEYENRREHQEGWSSSSGSMSGNRQRGSSERRNQDRHEQIGSSSVSGSTDGGRQSGPTGYGTHQDHQGGWSSSSDSRDGGRQGESSEQRNQANRQTSWSSSSSSGSSDVNRQDSLSASGANRHNQQRGSSSSGYGSQDGSRRQGVHGDRKYGFSWGSVPSSGSDDDSNDIGYPDHVVIG 419
            MSKNILRIVILLFIFDAVRGDTPVVPDEELNLFTLTWNQLHYLVRESLFNINEIRKENLAILGIMKECFELESCLGDNFIEEQDLFSGDNLNSLDQHGMGALIASLNRQLLSLEEYQKQLRYELNSRKELHYKNQVENYMQQGGGRHRHGWSSEGSQGSYSQYGHNQQGFTSSSGSRGGSRQGGSSEHGTQQGHHQQGWPSSSGSRDGSRQGSSSEHGTHREHHQDWSSSSSGSNNQGSSSEYENRREHQEGWSSSSGSMSGNRQRGSSERRNQDRHEQIGSSSVSGSTDGGRQSGPTGYGTHQDHQGGWSSSSDSRDGGRQGESSEQRNQANRQTSWSSSSSSGSSDVNRQDSLSASGANRHNQQRGSSSSGYGSQDGSRRQGVHGDRKYGFSWGSVPSSGSDDDSNDIGYPDHVVIG
Sbjct:    1 MSKNILRIVILLFIFDAVRGDTPVVPDEELNLFTLTWNQLHYLVRESLFNINEIRKENLAILGIMKECFELESCLGDNFIEEQDLFSGDNLNSLDQHGMGALIASLNRQLLSLEEYQKQLRYELNSRKELHYKNQVENYMQQGGGRHRHGWSSEGSQGSYSQYGHNQQGFTSSSGSRGGSRQGGSSEHGTQQGHHQQGWPSSSGSRDGSRQGSSSEHGTHREHHQDWSSSSSGSNNQGSSSEYENRREHQEGWSSSSGSMSGNRQRGSSERRNQDRHEQIGSSSVSGSTDGGRQSGPTGYGTHQDHQGGWSSSSDSRDGGRQGESSEQRNQANRQTSWSSSSSSGSSDVNRQDSLSASGANRHNQQRGSSSSGYGSQDGSRRQGVHGDRKYGFSWGSVPSSGSDDDSNDIGYPDHVVIG 419
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BLAST of EMLSAG00000002906 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold295_size218279-snap-gene-0.25 (protein:Tk09087 transcript:maker-scaffold295_size218279-snap-gene-0.25-mRNA-1 annotation:"unnamed protein product")

HSP 1 Score: 55.8398 bits (133), Expect = 3.210e-9
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:   17 AVRGDTPVVPDEELNLFTLTWNQLHYLVRESLFNINEIRKENLAILGIMKECFELESCL 75
            A++G  P V   ELN  +L WNQ+HYLVRE L   +++++E+  +   ++ C+ LE CL
Sbjct:   31 ALKG-FPAVDVNELNPLSLNWNQVHYLVREMLIEADDLKREHDLLYKDIQSCYGLEECL 88
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002906 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002906 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592793015|gb|GAXK01161553.1|5.611e-527.27TSA: Calanus finmarchicus comp35068_c0_seq1 transc... [more]
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BLAST of EMLSAG00000002906 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029060.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s167:13215... [more]
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BLAST of EMLSAG00000002906 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002906 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002906 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002906 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold295_size218279-snap-gene-0.253.210e-940.68protein:Tk09087 transcript:maker-scaffold295_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s167supercontigLSalAtl2s167:132158..137604 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s167-processed-gene-1.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002906 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002906EMLSAT00000002906-698753Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s167:132158..137604+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002906-685672 ID=EMLSAG00000002906-685672|Name=EMLSAG00000002906|organism=Lepeophtheirus salmonis|type=gene|length=5447bp|location=Sequence derived from alignment at LSalAtl2s167:132158..137604+ (Lepeophtheirus salmonis)
ATCGGAATTTATATCCATGATTTGTTCATCAAGTATTTTTGTTTTGATTT
GACTTGAATGTGAAGAAGAGGTTTAGTGAAAAGTACAAGCTGTTGTCCAA
TGGAAAGGTTCATAATTGGGCAGAGGCAGATTTGTAGGTAGTGTGAAAAG
AAAAGAAAGAAAGAAACAAGAGATTTTGTGAAGTGTGACGTCATGATTTG
GGATTTGACATTAGTGTTCAAAACCCCGCGAATTCTCCTAATGATTTAAT
AATATAATAATATTATATTCCTATTGTGTGCATCCCTAGAAATGAAGAAA
AAGACAAGGAAGTCTGATACTATTTCCACTGATAAGGACCCATACGATTG
TATCTACAATGACCTTCGAAGTAAGCCACATGGTTTTCCTCCCCTATCCC
CTTGTTTTTCATTTCTGTGCATTTCTTAGATTTAATGGAAACGACGCTTC
TTCGTGGAGAATCCAATTCCGCTTTATTACTTGGGCCTCGTGGTGTGGGA
AAGACACGTCTTGCTCATCGAGCTCTTCAAAGTTTTCACAGAGAGAATGG
AGAAATTCTGGGCGAAGGACTTGAAGTCTTCCTTCACGGACTTCTTCAAA
CTGACGATCGAATGGCACTTAAAGAGATCACAAAGCAACTCATGCTGGAA
AACGTGGTGGGGGATAAAGTATTTGGCTCTTTCGCGGAGCATCTTGAATT
TCTACTCAAATCCCTTCAATCTGGAGGAAGAACCAAGTCCAAACCCATTA
TTTTCCTTCTAGAAGTAATATCCACGCTATTTTCTTTACTCATTATTAAC
AGATATAACCATGAATTAATCCCTAGGAATTTGATTTATTTGCGAGCCAT
CACAATCAAACTTTACTTTACAACCTCTTCGATGTGGCTCAATCCAAGGC
AGCACCAATTTGTGTCATTGGACTCAGTTGTCAACTTGATGTGATAGAGC
GTCTCGAAAAACGTGTCAGATCTCGCTTTAGTCATCGTCAACTCTATATG
CACAACCTAGATTCATTTAATGATTATATGAACATTGCTCAAAGTATTTT
AAAGGCACGTAACATACCTGTTTCCACTGATGAAGACTTTAAAAAATTGC
TAGAGTCCATCTTTTCATTACGAAGGGATATTGGATATTTGGAACAAGTT
TTGGTGTTTGGGCACGGATTTGATAAGAATGACATATCTAAGGGTATTAA
ACAAAAATATAAGACATATGCGCTATATTAATCATTGTTTTTTTGCAGGA
CTTTTAAAGAGTTTAAATCATATGAACGTAGAATATGAGGCCTCTATTAT
ATCAGACTTGACTCTTCTGGAAATAACCTTACTCATAGCATCTAAACACA
TACAATTTATCTATGATGGTCAATCTTTTAATTTTGAAATGGTATACCAT
GAATTCTGTAAATTTGTAAATCGGCGTACCTCCAACGTTCTCAAATATGA
AAAACCCACTGTTTCCAAAGCCTTCGAAACCCTCATAGCTATGGAATTGA
TCATTCCGTCTGATAAGATGTCTAAAACCCAAAAAGAGTACAGGCTTTAC
TCTCTTCAAGTTACTCCAGAGCAAATTGTCAGTGTTATTAAAAATGATAG
AACCATGCCTGTCGATATTAAAGAATGGGCTGTATCTGAACTTCACTGAT
ATGATTATTATTAAACTACTTTTTTACCCATTGTTTATGACGCATCATTT
TAACCACAAATAATTGTTCTCTTTTATTTTGCCTTTTTTATGGAGGTGGG
TTTCTACCTTTTATGTCATAGAATGTATAAAAATAGGCAGGACGTGCAGG
TTCAGGTTGTCAAGTTAGTATTGTTATTATTATTATTTGGTCATACCAGT
TATCTTGATTTTAGAAAAAACATCTGTGCTCATGAATTGGAAAATTTTCT
GAAATGTCCAAGAATATACTTAGGATAGTTATTTTACTCTTTATATTCGA
TGCTGTCCGTGGAGATACACCCGTCGTCCCAGATGAAGAATTGAATCTCT
TTACCTTGACATGGAATCAGGTGATTTAAGTGTTTCATACTCTACCTTGA
TTTATCCCCCATACACAATTACCGATTATAATTAACACAAAATCCAGAGT
TCCTAATTAAATACTTAATATGTATCCTCATGCTGTGTAAATTAAGAGGA
CTGTTAATTTAATTGGGGATTGAGTGACGAGGATCTCATTGTTCACTTAT
TGACGTGTGTTCTAATGAACTATACGACATTCTTAAATGTGATAATTAGG
GCATATGTGTCTTAGTAGTTATTAAAGTTGTATTCGAAATTTCAATTCAA
TGAATTAGTTATACAAATATATACACTATTTCCTTGAGTTATTCACATTG
AAGTGTCAATAGAATTATATAATATACTTTCTAAAATCTTGTCCAACAGT
TATTAATTTGATAAAAGAGGAACAGTTCAACAACATCCACTTAAAATATG
CTCAAACTCTAGAAATTATTTTAGAACCTACGGATGGTATATAATATTAT
GTACTATTACCTATAGTTTAGTATGAGCATGAAAATTCTAAATATCTTTA
CGGGATATAAATTAATTATCCAAGGCTAATCTATTTACTAGTATATAGAT
TAACCTACATTTCTCCCGTACTCAACAAATGCATGAGTACTTGAGTCTCA
ATTAAATGACATGCTCATTTCGTGTTGCGACATTGTGCAATAGCCGCATC
TTGTGTGTAGTTTTTCACACAGGGCGGGTATCCTTACAATCCATATGCAT
TTTAGATCGTTCCTTTGGACATACATTCATCTATATAATATTTATTTAAA
ACTAACATTGATTATTTGATAGGATAAATATAATCATACAAATTGATTTG
TACATGCCCAATGCATATATTATTCAAGTTGATTGTTTGCATAACGTGTT
GATTTCTGCATCAATAAATATTTTTAGCATGCTCTGAAAGGAATTATTTG
TACCTAATAAAATTGAATAACGATCGATAAGATTGACCACTTATCGCTAA
TTTAGAAAAAGATTATCCATGCCAATTATTACCATTGAAATTAAAAAATT
TTGGATTTAAAACATGACATGGTTTCTATCACAACTAAAAGAACAAGTTT
GCTCAAATTTATGCATAGTTTATATAAGGTTCTATGGAAAAAGTAGCGAT
TAAGAGAACTCACACGGAAGTGATGAGGATTATGATCCACATGTATTAAC
ATAATATCTATACTTAAATATGTAAGTAGATAATACAGCTTGATTWCTTT
CATGATTTTTTTTTTTTTTTGGTATAAAGACACATAAATACCAAGGATTT
CTGGGGGAGGGTCGGTATGACCGATCTAAATAGTATAAATACATAATTTG
TAGAGCTAGATACTTATTACTTTGTACCTACAAAATTCTAATCCCAAATT
ATTAGAATACGGAATCAAGTCAATATCACACAACCTTACTTTATTACTTT
TCATCCTTATTTTCTTGAGTCAATTTCCTAGAATTTCAATTATACATATT
ATATCCTAGTCAATTCGATTAATACTTAGTAAGTACATTTGGATCAAGGG
TATGGATTTTATGGGATTCCGTCTCCTCTTTAGGTTCTGAGGATGACCCC
AATTATCATGTAGTCATCGGTAGGGATATTTCAAAGCTCCCATTATTATG
TAGGATTCTGCATGACATGAACTTGAATGGAAGTTCGGGAAATCCTGTTT
TATATTGACCAAAATGCATGCACATATCGATAGAAAGAATGAGTTAGAGA
AAAGTAAAGCAGTAAATTAGAATTAGGGTTTTTTGATCAAATCTCACCTC
CGGTTATCTATGTACACATATAGGTACATAGGTCCGCACATTTATGTGTA
TATATGTACCTATGTATCCATATCTTGTTGCATACATAATATACTTAAGA
AGCTTATAATTTATTACCTCTCCATGTGTATATGTATGTTAATATCTACA
ACTACTATATATACATATGTATATCTAAGTATGAAATTATGTATACATAG
ATTTTATAGACAGATAATGTGCTAAAATTTATGTAACTTGGAAAATACGT
AGTAGTATTAATGATGATTAGAGTTATTTAAAAAAATTGAAAATTAAATG
ATTAATTATAACATCTGAGGGATATATCGATTGGAGCAATGTTTATTTGT
TCGCCATATAAAAAAATAGGTTGTTTACTTTCAGTATTTGAATTACAAAA
AACAGAATCATTCAAAGAATCTTTTAAAATAGGACTCCCTATATATATTC
TATGTGCCCAATCTTTGTTAAATTGTAATTAATGAGATTTAAATTATTCA
CTTATAGTTGCATTACCTTGTGCGTGAAAGTTTATTCAATATTAATGAAA
TACGGAAGGAGAACCTTGCCATTCTTGGAATAATGAAAGAATGCTTTGAA
CTCGAATCTTGTTTGGGAGATAATTTTATTGAAGAGCAGGATCTGTTTTC
TGGTGACAATTTAAATAGCTTGGACCAGCATGGCATGGGTGCTCTCATTG
CTTCATTGAATAGACAACTTCTCAGCTTAGAAGAATATCAGAAGCAATTG
AGATATGAACTTAATAGTAGAAAGGAACTACATTATAAGAATCAGGTTGA
AAATTATATGCAACAAGGTGGAGGTCGCCATCGACATGGATGGTCTTCAG
AAGGTTCACAAGGTAGTTATTCTCAGTATGGGCACAATCAGCAGGGGTTT
ACATCTTCATCAGGATCAAGGGGTGGTAGTAGACAAGGTGGTTCTTCTGA
ACATGGAACACAGCAAGGACACCATCAGCAGGGATGGCCATCTTCATCTG
GATCAAGGGATGGTAGTAGACAAGGTAGTTCGTCTGAACACGGAACACAC
CGAGAGCATCATCAAGACTGGTCTTCTTCGTCATCAGGTAGCAATAACCA
AGGTAGCTCTTCTGAATATGAAAACCGTCGAGAACATCAAGAAGGTTGGT
CTTCTTCATCTGGTTCAATGAGTGGTAATAGACAAAGGGGCTCTTCTGAA
CGTAGAAATCAAGATCGCCATGAACAAATTGGATCTTCGTCTGTTTCTGG
CTCAACTGATGGTGGCAGACAAAGTGGTCCTACAGGATATGGAACCCATC
AAGATCATCAAGGAGGATGGTCTTCTTCTTCTGATTCAAGGGATGGCGGT
AGACAGGGTGAATCTTCTGAACAAAGAAATCAAGCAAACCGTCAAACAAG
CTGGTCTTCGTCTTCTTCCTCTGGTTCAAGTGATGTAAACAGGCAAGATA
GTTTATCAGCAAGCGGAGCTAATAGGCATAATCAACAAAGAGGGTCATCT
TCGTCTGGGTATGGATCTCAAGATGGTTCTCGTAGACAAGGTGTACATGG
GGATCGTAAGTATGGATTTTCATGGGGATCTGTCCCCTCCTCAGGTTCTG
ATGATGACTCCAATGATATTGGATACCCAGATCATGTAGTCATAGGA
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