EMLSAG00000002974, EMLSAG00000002974-685740 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002974
Unique NameEMLSAG00000002974-685740
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002974 vs. C. finmarchicus
Match: gi|592871067|gb|GAXK01086495.1| (TSA: Calanus finmarchicus comp478223_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 6.864e-3
Identity = 35/135 (25.93%), Postives = 58/135 (42.96%), Query Frame = 0 
Query:  125 LPFRNYRVNRASYSFGSGREPEXRMPFDMEKSRFVVPFDGIYYFHFRGYKGSK-SCDLHFHVNKKSELFKCPIKTGIGELVSWNIMKVLNQDDIIYL---KSSKIGIKNNHTFFTCSPYLKAEFLGMLLKNNARR 255
            LP+    +N      G G         DM+  RF  P  G+Y+F    Y   + +  L    N   E+  C   +G+G+  S +++  L++DD + +     SK+ +  +   FT        FLGMLL+ +  R
Sbjct:  768 LPYTKLNIN-----LGDG--------MDMDTGRFTAPVSGVYFFVLNVYGAPRDAVVLSIRANDFQEIASC---SGVGK-ASQSVVVDLDKDDTVAVFVNDKSKL-VDTDKNKFT-------HFLGMLLRPDTIR 1097
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BLAST of EMLSAG00000002974 vs. C. finmarchicus
Match: gi|592871068|gb|GAXK01086494.1| (TSA: Calanus finmarchicus comp478223_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 7.098e-3
Identity = 35/135 (25.93%), Postives = 58/135 (42.96%), Query Frame = 0 
Query:  125 LPFRNYRVNRASYSFGSGREPEXRMPFDMEKSRFVVPFDGIYYFHFRGYKGSK-SCDLHFHVNKKSELFKCPIKTGIGELVSWNIMKVLNQDDIIYL---KSSKIGIKNNHTFFTCSPYLKAEFLGMLLKNNARR 255
            LP+    +N      G G         DM+  RF  P  G+Y+F    Y   + +  L    N   E+  C   +G+G+  S +++  L++DD + +     SK+ +  +   FT        FLGMLL+ +  R
Sbjct:  768 LPYTKLNIN-----LGDG--------MDMDTGRFTAPVSGVYFFVLNVYGAPRDAVVLSIRANDFQEIASC---SGVGK-ASQSVVVDLDKDDTVAVFVNDKSKL-VDTDKNKFT-------HFLGMLLRPDTIR 1097
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BLAST of EMLSAG00000002974 vs. C. finmarchicus
Match: gi|592955531|gb|GAXK01003025.1| (TSA: Calanus finmarchicus comp2828718_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.777e+0
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 0 
Query:  217 IIYLKSSKIGIKNNHTFFTC-----SPYLKAEFLGMLLKNNARRVEWN 259
            I+YL  SK+ +KN+ T FTC      PY+    LGM  K+ +  V WN
Sbjct:   22 ILYL--SKVSLKNSQTLFTCLALTSQPYIFNFVLGM--KSISF*VTWN 153
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BLAST of EMLSAG00000002974 vs. L. salmonis peptides
Match: EMLSAP00000002974 (pep:novel supercontig:LSalAtl2s:LSalAtl2s170:12346:14636:1 gene:EMLSAG00000002974 transcript:EMLSAT00000002974 description:"maker-LSalAtl2s170-augustus-gene-0.16")

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 
Query:    1 MEERETSLGNYDEKIYTQPIIPKVQSIVSERRYKYSKPISVSPLLTSSTNRVILSEESSNYNHLRLGIRNTYVIILINLISIIAAIVSLVYMNTLTPEIKIQVDAYCLFDVYIDRCNESFRNDVLPFRNYRVNRASYSFGSGREPEXRMPFDMEKSRFVVPFDGIYYFHFRGYKGSKSCDLHFHVNKKSELFKCPIKTGIGELVSWNIMKVLNQDDIIYLKSSKIGIKNNHTFFTCSPYLKAEFLGMLLKNNARRVEWNQIA 262
            MEERETSLGNYDEKIYTQPIIPKVQSIVSERRYKYSKPISVSPLLTSSTNRVILSEESSNYNHLRLGIRNTYVIILINLISIIAAIVSLVYMNTLTPEIKIQVDAYCLFDVYIDRCNESFRNDVLPFRNYRVNRASYSFGSGREPEXRMPFDMEKSRFVVPFDGIYYFHFRGYKGSKSCDLHFHVNKKSELFKCPIKTGIGELVSWNIMKVLNQDDIIYLKSSKIGIKNNHTFFTCSPYLKAEFLGMLLKNNARRVEWNQIA
Sbjct:    1 MEERETSLGNYDEKIYTQPIIPKVQSIVSERRYKYSKPISVSPLLTSSTNRVILSEESSNYNHLRLGIRNTYVIILINLISIIAAIVSLVYMNTLTPEIKIQVDAYCLFDVYIDRCNESFRNDVLPFRNYRVNRASYSFGSGREPEXRMPFDMEKSRFVVPFDGIYYFHFRGYKGSKSCDLHFHVNKKSELFKCPIKTGIGELVSWNIMKVLNQDDIIYLKSSKIGIKNNHTFFTCSPYLKAEFLGMLLKNNARRVEWNQIA 262
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002974 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002974 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592871067|gb|GAXK01086495.1|6.864e-325.93TSA: Calanus finmarchicus comp478223_c1_seq2 trans... [more]
gi|592871068|gb|GAXK01086494.1|7.098e-325.93TSA: Calanus finmarchicus comp478223_c1_seq1 trans... [more]
gi|592955531|gb|GAXK01003025.1|5.777e+041.67TSA: Calanus finmarchicus comp2828718_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002974 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029740.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s170:12346... [more]
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BLAST of EMLSAG00000002974 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002974 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002974 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002974 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s170supercontigLSalAtl2s170:12346..14636 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s170-augustus-gene-0.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002974 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002974EMLSAT00000002974-698821Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s170:12346..14636+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002974-685740 ID=EMLSAG00000002974-685740|Name=EMLSAG00000002974|organism=Lepeophtheirus salmonis|type=gene|length=2291bp|location=Sequence derived from alignment at LSalAtl2s170:12346..14636+ (Lepeophtheirus salmonis)
GTTTTATTAGTGCATTTAAGGCTTATGAATAAAAACTATTGAACTCCGGA
TAATTCAATTTTGATCAATTTCTATTACATGAGATGAGTACAATATAAAC
TCTGAATAATTGTAGGAATAACTGGAGTAGTACTAAAGATCTAATGTGTT
TTAGAATTATTATGCCGAGATATTCTTGCTATTATTCCGTCACGCGCGAT
TCAGAAGACAAATCCCTATAAAAAAATATATATAACGGAAATGAACAATT
TATCTTGAATTTCCATGTTTTTTTTATCAAAGAGTTATAATGTTCTACAT
AAAATGTGAATGATTTCGAGGTACCTATTTTATGAGTCATGGAGGAAAGG
TAAGGAAAATCTGAATCCTACTAATGATCAAGGTTTATGGTGATTATTTA
CTAGAGAAACGTCGTTAGGGAATTATGATGAAAAAATATACACTCAACCC
ATAATCCCGAAAGTGCAATCAATCGTGTCTGAAAGAAGATATAAATATTC
CAAACCGATTTCCGTTTCGCCTCTTTTAACTTCTTCCACAAATAGAGTTA
TATTAGTGAGTGTATACTAATTTTTCAGCATTCATACCCTGGATAATTGT
CTTTATAGAGCGAGGAAAGTTCAAATTATAATCATTTACGGCTAGGAATA
CGAAATACGTACGTAATCATACTCATCAATTTAATATCTATTATAGCAGC
AATCGTGTCCCTTGTATATATGAATACATTAACTCCAGAAATTAAAATCC
AAGTCGATGCATACTGTTTATTTGACGTATACATCGATCGCTGTAATGAG
TCCTTTAGGAATGATGTATTGCCCTTTCGAAATTATCGGGTAAATAGAGC
TTCATATTCCTTTGGAAGTGGAAGGGAACCAGAGKATAGAATGCCTTTTG
ACATGGAAAAATCACGGTTTGTTGTTCCTTTTGATGGGATTTATTATTTT
CATTTCCGAGGCTATAAGGGAAGTAAATCTTGTGATCTTCATTTTCACGT
AAATAAAAAGAGGTAGGTTTAATTTTTTATTCATTTGATGAAATAATTTA
GTATATTTCTTGTTTCAGTGAGCTTTTCAAATGTCCTATCAAAACTGGGA
TTGGTGAGCTTGTGTCTTGGAATATTATGAAAGTATTGAACCAGGATGAT
ATTATCTATTTAAAGTCTTCAAAAATTGGTATAAAAAACAATCATACGTT
CTTTACGTGTAGCCCTTATTTAAAAGCAGAGTTTCTGGGAATGCTTTTGA
AGAATAATGCACGAAGAGTCGAATGGAATCAGATAGCTTAAATTAATTAA
TTAAGGATTGTAATACCCTTTCTAAAGGGTATGTTCATTCATATTGGAGC
ACATTTGATTAGACAAATAAAGAATTTTGAGGATTAGCAATGCTATGTCT
ATATTATTATTAACATATTTTTTGACATACAAATTCAAAGAGCAGAATGA
ATAACTATTGACTACAGATTACATCAAACAAAGCGTGTAGCAATGGATAG
GATTTTAGTATAATCCGCCTTCTTGGCTATGGTATTTTCCTTTAAAATTT
GTTTGAGTATTATGGGGATAGGAGCGTGGATCCGTGTTCCCAGTGGAGCT
CCCATTCGATCAATCAGAACAACATTATTAGAATCGAATTTAGGAACACC
CACATTTTGTTTTTGCTTGAGACCAACAATGACCCCATGACGGACTTCCC
CCATGATCGCCAAAGATACTCGATCACCCAATTTGCCAAGGGCGCCATGG
GGTTTTTTCTTATGAAAAGCCGCTTGAACTTGGATGACCTTAGGAGGTTT
ACGCTCTGCCATGGCTTTTCTTCCAAGTTCAGAGTCATCGATGACTCTGA
GACGAGATCCGCTCTGAATACCATACACTGAGATGGGACTGAATTTTCTA
TGACGGTGATGAACCAAAGAAGGCTTATAATTAGGAAATGCTACACAKGG
AGGTACATCTGGGAAGCGCCATGAGGATCCCTGTCGCGAAAAGAAGGATC
CAAATAGCCGAAAAGAACGTAGGGTCTCACTTGGAGTAAACCACACCATT
ACTTAAATTACAAAAAAATCAAAATCAACAAAATCAAGGGCTGTAAAAGA
AGTTGTGGCGTTATATTTTATGTATAAGATTTCGGTGACACCCAAATGAC
TGTTATGTTGGATAAGCACTGGAGTTACTAGTGAATTAATAACTATTATT
GCACTTTTCAATGCCGAGAACTGAGTTTTTTTCTCACATTTCCTAAAAAA
ATGACGTCACTTATTCTTTTTAATTTTATGTTTATTGAGAG
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