EMLSAG00000003411, EMLSAG00000003411-686177 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003411
Unique NameEMLSAG00000003411-686177
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003411 vs. C. finmarchicus
Match: gi|592758386|gb|GAXK01196027.1| (TSA: Calanus finmarchicus comp475549_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 8.321e-1
Identity = 17/47 (36.17%), Postives = 27/47 (57.45%), Query Frame = 0 
Query:   25 EPVGEVEYDLEVPFEDYNNEVSNEYIYEEAPNFEEDTSSNSNTPKRR 71
            E V E EYD ++ FE+    +  E  ++E PNFEE +  N+ T  ++
Sbjct:  540 EDVPEAEYDGDI-FEEKEVAMWEELKWKEVPNFEEMSCHNNGTLAKK 677
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BLAST of EMLSAG00000003411 vs. L. salmonis peptides
Match: EMLSAP00000003411 (pep:novel supercontig:LSalAtl2s:LSalAtl2s187:574334:574666:-1 gene:EMLSAG00000003411 transcript:EMLSAT00000003411 description:"maker-LSalAtl2s187-augustus-gene-6.21")

HSP 1 Score: 147.132 bits (370), Expect = 2.266e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 QGFSGSFFDVISLLSLVPKAPQTEEPVGEVEYDLEVPFEDYNNEVSNEYIYEEAPNFEEDTSSNSNTPKRRCV 73
            QGFSGSFFDVISLLSLVPKAPQTEEPVGEVEYDLEVPFEDYNNEVSNEYIYEEAPNFEEDTSSNSNTPKRRCV
Sbjct:    1 QGFSGSFFDVISLLSLVPKAPQTEEPVGEVEYDLEVPFEDYNNEVSNEYIYEEAPNFEEDTSSNSNTPKRRCV 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003411 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003411 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592758386|gb|GAXK01196027.1|8.321e-136.17TSA: Calanus finmarchicus comp475549_c1_seq1 trans... [more]
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BLAST of EMLSAG00000003411 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034112.266e-47100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s187:57433... [more]
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BLAST of EMLSAG00000003411 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003411 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003411 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003411 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s187supercontigLSalAtl2s187:574334..574666 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s187-augustus-gene-6.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003411 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003411EMLSAT00000003411-699258Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s187:574334..574666-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003411-686177 ID=EMLSAG00000003411-686177|Name=EMLSAG00000003411|organism=Lepeophtheirus salmonis|type=gene|length=333bp|location=Sequence derived from alignment at LSalAtl2s187:574334..574666- (Lepeophtheirus salmonis)
CAAGGATTCTCCGGCTCCTTCTTTGATGTGATATCCTTACTTAGCCTCGT
TCCCAAAGCGCCACAAACCGAGGTAGGTATTTACAATCTTCCAAAAGTGT
TTTTTTCTATTTTGTACATCGTTTTAGGAGCCGGTTGGTGAGGTCGAATA
TGATTTAGAGGTACCTTTTGAGGACTACAATAATGAAGTTAGTAATGAGT
ACATCTATGAAGAAGCTCCTAACGTAATTGACATAATATTGATTGATAAT
TATAATAATAATTTTTTTAACTTTGTTTAAAGTTTGAAGAGGACACGTCG
TCGAATTCAAATACACCCAAACGAAGATGTGTT
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