EMLSAG00000003424, EMLSAG00000003424-686190 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003424
Unique NameEMLSAG00000003424-686190
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003424 vs. L. salmonis peptides
Match: EMLSAP00000003424 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:336561:337384:-1 gene:EMLSAG00000003424 transcript:EMLSAT00000003424 description:"maker-LSalAtl2s188-augustus-gene-3.9")

HSP 1 Score: 417.157 bits (1071), Expect = 1.306e-149
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0 
Query:    1 MMNKSYSSDSSDDNNECNKSDIIDNTGACSNEINIQQNNAPVHVVPSGNVILNLSMYINGDMATKNEEEYNRVVKTTLRNIVSSFKMEPQIQKDGPQCSHSSDFISSASLNLGSSPCIQRSPFFSMNDPSNINSSNVTNQTLIQVRVPNLKNANSNRPMLRVFSKKIYHTIFRVIVTILAFALVIGLMYYMIMCSDIENGGSRPL 205
            MMNKSYSSDSSDDNNECNKSDIIDNTGACSNEINIQQNNAPVHVVPSGNVILNLSMYINGDMATKNEEEYNRVVKTTLRNIVSSFKMEPQIQKDGPQCSHSSDFISSASLNLGSSPCIQRSPFFSMNDPSNINSSNVTNQTLIQVRVPNLKNANSNRPMLRVFSKKIYHTIFRVIVTILAFALVIGLMYYMIMCSDIENGGSRPL
Sbjct:    1 MMNKSYSSDSSDDNNECNKSDIIDNTGACSNEINIQQNNAPVHVVPSGNVILNLSMYINGDMATKNEEEYNRVVKTTLRNIVSSFKMEPQIQKDGPQCSHSSDFISSASLNLGSSPCIQRSPFFSMNDPSNINSSNVTNQTLIQVRVPNLKNANSNRPMLRVFSKKIYHTIFRVIVTILAFALVIGLMYYMIMCSDIENGGSRPL 205
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003424 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003424 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003424 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034241.306e-149100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s188:33656... [more]
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BLAST of EMLSAG00000003424 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003424 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003424 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003424 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s188supercontigLSalAtl2s188:336561..337384 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s188-augustus-gene-3.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003424 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003424EMLSAT00000003424-699271Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s188:336561..337384-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003424-686190 ID=EMLSAG00000003424-686190|Name=EMLSAG00000003424|organism=Lepeophtheirus salmonis|type=gene|length=824bp|location=Sequence derived from alignment at LSalAtl2s188:336561..337384- (Lepeophtheirus salmonis)
TTATTTGTCAATATGATGAACAAATCATATAGTAGTGACAGCAGTGATGA
TAACAATGAGTGCAATAAGTCCGACATAATTGACAATACAGGAGCCTGCT
CCAATGAAATAAATATCCAACAAAATAATGCTCCTGTTCACGTTGTGCCC
TCTGGAAATGTTATACTCAACTTAAGCATGTACATCAATGGGGACATGGC
GACTAAGAACGAGGAGGAGTACAATAGAGTCGTTAAAACGACATTAAGAA
ATATAGTTAGTTCCTTTAAAATGGAGGTAAAGTGCAAGTCCAGGATTGTC
CAATCATGATCCCTTTATCATTCCTCTATTTTTTTATATACTCCTCAGCC
GCAAATACAAAAAGATGGTCCTCAATGCTCCCATTCTTCTGATTTCATCT
CCTCTGCATCCTTAAATCTGGGATCTTCACCTTGTATCCAACGCTCTCCA
TTCTTCTCTATGAATGATCCATCGAATATCAATAGCTCCAATGTCACAAA
TCAAACCCTTATTCAAGTACGCGTTCCTAACTTAAAAAATGCAAATTCTA
ACCGGCCAATGCTTCGAGGTACGTAATTACTAACAAACAATATTTTTCTT
CTCCCACAGAAACTCTATTATCTTAATTTCAGTGTTTTCCAAGAAAATCT
ACCATACGATTTTTCGAGTCATTGTAACCATCCTGGCTTTTGCTCTCGTC
ATTGGTCTAATGTACTATATGATCATGGTAAATGACTAATAAGTAATCCA
TAAAGCATATCAAAAATTTTCCTTATATCTTGCAGTGTAGTGACATAGAA
AATGGAGGTTCCAGACCTCTTTAG
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