EMLSAG00000003425, EMLSAG00000003425-686191 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003425 vs. C. finmarchicus
Match: gi|592767023|gb|GAXK01187545.1| (TSA: Calanus finmarchicus comp11452_c1_seq1 transcribed RNA sequence) HSP 1 Score: 81.2629 bits (199), Expect = 2.626e-15 Identity = 63/149 (42.28%), Postives = 83/149 (55.70%), Query Frame = 0 Query: 51 LMQRLKGQDLYGGTVKFGG-GNASTFFRQRRERLMAASPYASKKRMNDSLSRKASS------PA----NEEMPDSQ-----------KKSNSIAPADAMSSTAKLILDTLERMST---PLRDARKIPVIPSDISRAEKRRLIAQELDSS 174 ++ RLKGQDLYGG V FGG G+A RR RL +ASPY + R N + R+A PA N+ +P S S P +SSTAKLIL TL+R+ST P+ DA+KIP+ + +RAEKR+L+ EL+ S Sbjct: 328 IIPRLKGQDLYGGPVMFGGLGSA------RRTRLQSASPYGAAMR-NRTAERRARQGPLTFPPALGVHNDTVPPSSLPSTAPSSPQSSPGPSSTPPAPLSSTAKLILSTLDRLSTSGTPITDAKKIPLNTTTPNRAEKRKLLETELNCS 753
BLAST of EMLSAG00000003425 vs. L. salmonis peptides
Match: EMLSAP00000003425 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:355164:356891:-1 gene:EMLSAG00000003425 transcript:EMLSAT00000003425 description:"maker-LSalAtl2s188-augustus-gene-3.7") HSP 1 Score: 978.008 bits (2527), Expect = 0.000e+0 Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0 Query: 1 MENGHESQNSLSTFGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFRQRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQELDSSLLGGGLRRKRPNLSSNGSSLNGPPVRTIFSPVLNRTKKSERATISENSNAKLELNKNEVKKTEAPKESIQNGFKPNNDADSVVSSIEAFKKTVDHSIGYGTSSAGGKLRMKDTAGPRSGRILQQPAIPVKTPVYESKYLPPNGCTKTPPLVKSSFVVPSTVAPPTKPLNIPAPSPQVEEKKKSTPTYDSPSLDLESTRLFTFSEPKTSSFVVDHVNDEKIIQYTFSNPRILTEESTSNSVKSPLLINGHEPNRKLPDVTSFPSATSLKSGSVLDVLVGSKGMLPDITTTPGQLKKGGVLSALSKMHSTSNSKNARL 490 MENGHESQNSLSTFGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFRQRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQELDSSLLGGGLRRKRPNLSSNGSSLNGPPVRTIFSPVLNRTKKSERATISENSNAKLELNKNEVKKTEAPKESIQNGFKPNNDADSVVSSIEAFKKTVDHSIGYGTSSAGGKLRMKDTAGPRSGRILQQPAIPVKTPVYESKYLPPNGCTKTPPLVKSSFVVPSTVAPPTKPLNIPAPSPQVEEKKKSTPTYDSPSLDLESTRLFTFSEPKTSSFVVDHVNDEKIIQYTFSNPRILTEESTSNSVKSPLLINGHEPNRKLPDVTSFPSATSLKSGSVLDVLVGSKGMLPDITTTPGQLKKGGVLSALSKMHSTSNSKNARL Sbjct: 1 MENGHESQNSLSTFGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFRQRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQELDSSLLGGGLRRKRPNLSSNGSSLNGPPVRTIFSPVLNRTKKSERATISENSNAKLELNKNEVKKTEAPKESIQNGFKPNNDADSVVSSIEAFKKTVDHSIGYGTSSAGGKLRMKDTAGPRSGRILQQPAIPVKTPVYESKYLPPNGCTKTPPLVKSSFVVPSTVAPPTKPLNIPAPSPQVEEKKKSTPTYDSPSLDLESTRLFTFSEPKTSSFVVDHVNDEKIIQYTFSNPRILTEESTSNSVKSPLLINGHEPNRKLPDVTSFPSATSLKSGSVLDVLVGSKGMLPDITTTPGQLKKGGVLSALSKMHSTSNSKNARL 490
BLAST of EMLSAG00000003425 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold870_size86522-snap-gene-0.18 (protein:Tk03340 transcript:maker-scaffold870_size86522-snap-gene-0.18-mRNA-1 annotation:"nuclear pore complex protein") HSP 1 Score: 99.3673 bits (246), Expect = 2.015e-22 Identity = 82/225 (36.44%), Postives = 119/225 (52.89%), Query Frame = 0 Query: 14 FGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFR----------------------QRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQE-LDSSLLGGGLRRKRPNLSS---------NGSSLNGPPVRTIFSPV 206 FG+P++ S S+L P G S S + T + RL+GQ+++GG V +GG NAST +R RL++++PY S +R + +R A P++ P+ + S + +S+TAK IL+TL++MSTPLRDA KIPV RAEKRR +A E +D S G R+RP+L N ++LNGPP+R IFSP+ Sbjct: 21 FGSPLSRSRGSVLQPAAGDRIGAPSPPSPPSAVTTPKV--RLRGQEMFGGPVVYGGANASTNVSAFLSAASSSATSNGRPPNNASLRRANRLLSSAPYHSAQRWQNRSARPAPPPSSRPSPEPSQTSFN------LSATAKTILETLDQMSTPLRDALKIPV-----PRAEKRRALADEIMDGS--GSSYVRRRPHLGGAARGTASLPNSATLNGPPLRKIFSPL 230 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003425 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003425 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000003425 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003425 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003425 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003425 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003425 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s188:355164..356891- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003425-686191 ID=EMLSAG00000003425-686191|Name=EMLSAG00000003425|organism=Lepeophtheirus salmonis|type=gene|length=1728bp|location=Sequence derived from alignment at LSalAtl2s188:355164..356891- (Lepeophtheirus salmonis)back to top Add to Basket
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