EMLSAG00000003425, EMLSAG00000003425-686191 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003425
Unique NameEMLSAG00000003425-686191
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003425 vs. C. finmarchicus
Match: gi|592767023|gb|GAXK01187545.1| (TSA: Calanus finmarchicus comp11452_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 81.2629 bits (199), Expect = 2.626e-15
Identity = 63/149 (42.28%), Postives = 83/149 (55.70%), Query Frame = 0
Query:   51 LMQRLKGQDLYGGTVKFGG-GNASTFFRQRRERLMAASPYASKKRMNDSLSRKASS------PA----NEEMPDSQ-----------KKSNSIAPADAMSSTAKLILDTLERMST---PLRDARKIPVIPSDISRAEKRRLIAQELDSS 174
            ++ RLKGQDLYGG V FGG G+A      RR RL +ASPY +  R N +  R+A        PA    N+ +P S                S  P   +SSTAKLIL TL+R+ST   P+ DA+KIP+  +  +RAEKR+L+  EL+ S
Sbjct:  328 IIPRLKGQDLYGGPVMFGGLGSA------RRTRLQSASPYGAAMR-NRTAERRARQGPLTFPPALGVHNDTVPPSSLPSTAPSSPQSSPGPSSTPPAPLSSTAKLILSTLDRLSTSGTPITDAKKIPLNTTTPNRAEKRKLLETELNCS 753          
BLAST of EMLSAG00000003425 vs. L. salmonis peptides
Match: EMLSAP00000003425 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:355164:356891:-1 gene:EMLSAG00000003425 transcript:EMLSAT00000003425 description:"maker-LSalAtl2s188-augustus-gene-3.7")

HSP 1 Score: 978.008 bits (2527), Expect = 0.000e+0
Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0
Query:    1 MENGHESQNSLSTFGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFRQRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQELDSSLLGGGLRRKRPNLSSNGSSLNGPPVRTIFSPVLNRTKKSERATISENSNAKLELNKNEVKKTEAPKESIQNGFKPNNDADSVVSSIEAFKKTVDHSIGYGTSSAGGKLRMKDTAGPRSGRILQQPAIPVKTPVYESKYLPPNGCTKTPPLVKSSFVVPSTVAPPTKPLNIPAPSPQVEEKKKSTPTYDSPSLDLESTRLFTFSEPKTSSFVVDHVNDEKIIQYTFSNPRILTEESTSNSVKSPLLINGHEPNRKLPDVTSFPSATSLKSGSVLDVLVGSKGMLPDITTTPGQLKKGGVLSALSKMHSTSNSKNARL 490
            MENGHESQNSLSTFGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFRQRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQELDSSLLGGGLRRKRPNLSSNGSSLNGPPVRTIFSPVLNRTKKSERATISENSNAKLELNKNEVKKTEAPKESIQNGFKPNNDADSVVSSIEAFKKTVDHSIGYGTSSAGGKLRMKDTAGPRSGRILQQPAIPVKTPVYESKYLPPNGCTKTPPLVKSSFVVPSTVAPPTKPLNIPAPSPQVEEKKKSTPTYDSPSLDLESTRLFTFSEPKTSSFVVDHVNDEKIIQYTFSNPRILTEESTSNSVKSPLLINGHEPNRKLPDVTSFPSATSLKSGSVLDVLVGSKGMLPDITTTPGQLKKGGVLSALSKMHSTSNSKNARL
Sbjct:    1 MENGHESQNSLSTFGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFRQRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQELDSSLLGGGLRRKRPNLSSNGSSLNGPPVRTIFSPVLNRTKKSERATISENSNAKLELNKNEVKKTEAPKESIQNGFKPNNDADSVVSSIEAFKKTVDHSIGYGTSSAGGKLRMKDTAGPRSGRILQQPAIPVKTPVYESKYLPPNGCTKTPPLVKSSFVVPSTVAPPTKPLNIPAPSPQVEEKKKSTPTYDSPSLDLESTRLFTFSEPKTSSFVVDHVNDEKIIQYTFSNPRILTEESTSNSVKSPLLINGHEPNRKLPDVTSFPSATSLKSGSVLDVLVGSKGMLPDITTTPGQLKKGGVLSALSKMHSTSNSKNARL 490          
BLAST of EMLSAG00000003425 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold870_size86522-snap-gene-0.18 (protein:Tk03340 transcript:maker-scaffold870_size86522-snap-gene-0.18-mRNA-1 annotation:"nuclear pore complex protein")

HSP 1 Score: 99.3673 bits (246), Expect = 2.015e-22
Identity = 82/225 (36.44%), Postives = 119/225 (52.89%), Query Frame = 0
Query:   14 FGTPIANSTRSLLSPXPGSSSSNHSTGSSSVSSTHRPLMQRLKGQDLYGGTVKFGGGNASTFFR----------------------QRRERLMAASPYASKKRMNDSLSRKASSPANEEMPDSQKKSNSIAPADAMSSTAKLILDTLERMSTPLRDARKIPVIPSDISRAEKRRLIAQE-LDSSLLGGGLRRKRPNLSS---------NGSSLNGPPVRTIFSPV 206
            FG+P++ S  S+L P  G      S  S   + T   +  RL+GQ+++GG V +GG NAST                         +R  RL++++PY S +R  +  +R A  P++   P+  + S +      +S+TAK IL+TL++MSTPLRDA KIPV      RAEKRR +A E +D S  G    R+RP+L           N ++LNGPP+R IFSP+
Sbjct:   21 FGSPLSRSRGSVLQPAAGDRIGAPSPPSPPSAVTTPKV--RLRGQEMFGGPVVYGGANASTNVSAFLSAASSSATSNGRPPNNASLRRANRLLSSAPYHSAQRWQNRSARPAPPPSSRPSPEPSQTSFN------LSATAKTILETLDQMSTPLRDALKIPV-----PRAEKRRALADEIMDGS--GSSYVRRRPHLGGAARGTASLPNSATLNGPPLRKIFSPL 230          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003425 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003425 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592767023|gb|GAXK01187545.1|2.626e-1542.28TSA: Calanus finmarchicus comp11452_c1_seq1 transc... [more]
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BLAST of EMLSAG00000003425 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034250.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s188:35516... [more]
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BLAST of EMLSAG00000003425 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003425 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003425 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003425 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold870_size86522-snap-gene-0.182.015e-2236.44protein:Tk03340 transcript:maker-scaffold870_size8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s188supercontigLSalAtl2s188:355164..356891 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s188-augustus-gene-3.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003425 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003425EMLSAT00000003425-699272Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s188:355164..356891-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003425-686191 ID=EMLSAG00000003425-686191|Name=EMLSAG00000003425|organism=Lepeophtheirus salmonis|type=gene|length=1728bp|location=Sequence derived from alignment at LSalAtl2s188:355164..356891- (Lepeophtheirus salmonis)
ATGGAAAACGGACACGAGAGCCAAAATTCTTTGAGCACCTTCGGCACTCC CATTGCCAATTCAACGCGAAGTTTGTTGAGTCCCAGKCCTGGTTCCAGCT CCTCGAACCACTCGACGGGCTCCTCCTCCGTCTCATCCACGCATCGTCCC TTGATGCAAAGACTTAAAGGACAGGATCTCTATGGAGGTAATGTCTTGCC TACCTTCTCTTTGTCCCACCCCACATTTATTTCATGTCCACTTTCAGGTA CTGTCAAGTTCGGTGGAGGCAATGCTTCCACATTCTTTCGTCAAAGGCGA GAACGTCTCATGGCTGCCAGCCCCTATGCATCCAAGAAAAGAATGAACGA CTCCCTGTCTCGTAAAGCCTCTTCTCCAGCCAATGAGGAAATGCCAGACT CGCAAAAGAAGAGTAATTCCATAGCTCCTGCTGATGCTATGTCATCCACA GCCAAACTTATTCTCGACACGTTAGAACGCATGTCCACTCCTTTGAGAGA TGCTCGAAAGATCCCTGTTATACCTTCTGACATTTCTAGAGCTGAAAAGA GACGTTTAATTGCTCAAGAACTTGATAGTTCTTTACTCGGTGGAGGATTA AGAAGAAAGAGACCGAATCTGAGTTCTAATGGCTCATCTCTTAACGGCCC TCCTGTTAGGACTATTTTCTCACCAGTACTCAATCGTACAAAAAAATCGG AAAGGGCTACTATTTCTGAAAATAGTAACGCTAAATTAGAGTTAAACAAA AACGAAGTTAAAAAAACGGAAGCACCAAAAGAATCCATTCAAAATGGCTT TAAACCTAACAATGACGCGGATTCTGTAGTATCAAGTATTGAAGCCTTTA AAAAAACTGTCGATCACTCTATAGGCTATGGAACCTCATCGGCTGGTGGA AAGCTTAGAATGAAAGACACAGCGGGMCCRCGATCTGGACGGATACTTCA ACAACCTGCAATCCCTGTTAAAACACCTGTTTATGAATCTAAATATTTAC CTCCAAACGGCTGTACCAAGACTCCTCCCTTGGTAAAGAGTTCATTTGTT GTTCCATCAACTGTTGCACCTCCTACTAAACCTCTAAATATCCCTGCACC TTCTCCTCAGGTTGAGGAAAAGAAGAAATCTACTCCTACTTATGATTCTC CGTCATTGGATTTAGAATCAACAAGGTTATTTACTTTTTCGGAACCCAAG ACAAGTTCATTCGTAGTCGATCATGTAAATGATGAAAAAATAATACAATA TACATTTTCGAATCCAAGAATTCTTACTGAGGAATCTACATCTAATTCAG TCAAATCTCCATTATTAATTAATGGTCATGAGCCAAATAGAAAATTACCG GATGTTACATCTTTTCCTTCCGCAACTTCTTTGAAGTCAGGATCTGTTCT CGACGTTTTAGTTGGTTCTAAAGGTATATCAGTTTAAAGTCCTGAACGAC TTAAATTCATTCAATGCTCAGTGCTTTTATAAAATTTAATGAGATGTTTT ATTTTTTCCTATTCCTTTAACTTTGAAACTCATTTTAATGTTTACTGAGC TTGGACAGAATAATTTTCTCTATCTTCAATATTTTTGAGTACATCATTTT CCTTTTTTTATTTTGCAGGAATGCTACCAGACATTACGACAACCCCTGGC CAATTGAAGAAGGGCGGTGTTTTGTCTGCACTTAGTAAAATGCACAGCAC ATCAAATTCTAAAAACGCAAGATTATAA
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